RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SQORQ9Y6N5 450 aa13.41□□□□□ -0.26
SQSTM1-206ENST00000466342 MYH9P35579 1960 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 CYP3A7-CYP3A51PA0A087WV96 503 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 FAM205CA6NFA0 338 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 RRN3P2A6NIE6 340 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 ATG7O95352 703 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 RPLP2P05387 115 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 CYP3A7P24462 503 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 CD52P31358 61 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 GATMP50440 423 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 ITIH3Q06033 890 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 ST3GAL2Q16842 350 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 RSPO4Q2I0M5 234 aaPredicted RBP13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 PRR16Q569H4 304 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 SPOUT1Q5T280 376 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 LARP1BQ659C4 914 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 LLGL2Q6P1M3 1020 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 RUFY4Q6ZNE9 571 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 PLPPR4Q7Z2D5 763 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 RUBCNQ92622 972 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 LENG9Q96B70 501 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 HINFPQ9BQA5 517 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 ADAM7Q9H2U9 754 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 AZI2Q9H6S1 392 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 AGO3Q9H9G7 860 aaKnown RBP13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 CDH22Q9UJ99 828 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 LRFN2Q9ULH4 789 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 CDY2AQ9Y6F7 541 aa13.4□□□□□ -0.26
SQSTM1-206ENST00000466342 MBLAC1A4D2B0 266 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 H3BQV1 296 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 TDP2O95551 362 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 GCFC2P16383 781 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 PDCP20941 246 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 MARK3P27448 753 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 MTHFRP42898 656 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 SLC26A2P50443 739 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 STAT5BP51692 787 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 ACTR2P61160 394 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 PPFIA1Q13136 1202 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 ITGB3BPQ13352 177 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 GNL2Q13823 731 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 GRIK4Q16099 956 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 LETM2Q2VYF4 491 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 Q4G0T1 1027 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 CASP10Q92851 521 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 MBOAT7Q96N66 472 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 PCYT2Q99447 389 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 NAP1L4Q99733 375 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 FOXD4L1Q9NU39 408 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 TUBE1Q9UJT0 475 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 LZTS1Q9Y250 596 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 R4GN57 208 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 OTOGLQ3ZCN5 2332 aa13.39□□□□□ -0.27
SQSTM1-206ENST00000466342 IPO5O00410 1097 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 HSP90AA1P07900 732 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 INSRRP14616 1297 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 U2AF2P26368 475 aaKnown RBP eCLIP13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 MARCH8Q5T0T0 291 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 PLPP4Q5VZY2 271 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 PPP4R3AQ6IN85 833 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 NOSTRINQ8IVI9 506 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 THNSL1Q8IYQ7 743 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 DCLK2Q8N568 766 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 TDRD5Q8NAT2 981 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 DNAJB3Q8WWF6 145 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 ZNF577Q9BSK1 485 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 NGRNQ9NPE2 291 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 TBC1D22BQ9NU19 505 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 PUF60Q9UHX1 559 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 PADI3Q9ULW8 664 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 MAP1BP46821 2468 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 DENND4AQ7Z401 1863 aa13.38□□□□□ -0.27
SQSTM1-206ENST00000466342 CHD6Q8TD26 2715 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 IGKV6D-21A0A0A0MT36 114 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 HIDE1A8MVS5 230 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 DHX15O43143 795 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 SLC37A4O43826 429 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 CCNT1O60563 726 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 SDHBP21912 280 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 MRPS6P82932 125 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 PLCB4Q15147 1175 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 ABHD15Q6UXT9 468 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 COLGALT1Q8NBJ5 622 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 MRPS27Q92552 414 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 RNF216Q9NWF9 866 aaPredicted RBP13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 DDX25Q9UHL0 483 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 USTQ9Y2C2 406 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 PCDHB7Q9Y5E2 793 aa13.37□□□□□ -0.27
SQSTM1-206ENST00000466342 MSH4O15457 936 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 CCNE2O96020 404 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 PLCB3Q01970 1234 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 BECN1Q14457 450 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 IER5Q5VY09 327 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 FAM160B1Q5W0V3 765 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 MCTP1Q6DN14 999 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 ZC3H14Q6PJT7 736 aaKnown RBP13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 TCF25Q9BQ70 676 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 ERVK-5Q9HDB9 667 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 ENTPD7Q9NQZ7 604 aa13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 CYP26B1Q9NR63 512 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms