RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 CDC42EP1Q00587 391 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 EMC2Q15006 297 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 OTUD6AQ7L8S5 288 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 NOSTRINQ8IVI9 506 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 KLHL23Q8NBE8 558 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 PRPF31Q8WWY3 499 aaKnown RBP24.33■■□□□ 1.49
LIME1-203ENST00000465591 P2RX5Q93086 422 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 TMX3Q96JJ7 454 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 UBE2ZQ9H832 354 aaPredicted RBP24.33■■□□□ 1.49
LIME1-203ENST00000465591 PPME1Q9Y570 386 aa24.33■■□□□ 1.49
LIME1-203ENST00000465591 MUC3AQ02505 3323 aa24.33■■□□□ 1.48
LIME1-203ENST00000465591 ST18O60284 1047 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 SPATA31C1P0DKV0 1188 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 LRRC55Q6ZSA7 311 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 ZNF598Q86UK7 904 aaKnown RBP24.32■■□□□ 1.48
LIME1-203ENST00000465591 SPPL3Q8TCT6 385 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 TBC1D32Q96NH3 1257 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 CASD1Q96PB1 797 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 LMAN2LQ9H0V9 348 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 NSUN3Q9H649 340 aaKnown RBP24.32■■□□□ 1.48
LIME1-203ENST00000465591 CWH43Q9H720 699 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 MINDY3Q9H8M7 445 aa24.32■■□□□ 1.48
LIME1-203ENST00000465591 TYW1Q9NV66 732 aaKnown RBP24.32■■□□□ 1.48
LIME1-203ENST00000465591 A0A0U1RQF3 1178 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 BDP1A6H8Y1 2624 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 LAMTOR4Q0VGL1 99 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 AAK1Q2M2I8 961 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 CLLU1OSQ5K130 101 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 TTC38Q5R3I4 469 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 RNF169Q8NCN4 708 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 NEK9Q8TD19 979 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 PIGOQ8TEQ8 1089 aa24.31■■□□□ 1.48
LIME1-203ENST00000465591 PSPC1Q8WXF1 523 aaKnown RBP24.31■■□□□ 1.48
LIME1-203ENST00000465591 OR52Z1P0C646 297 aa24.3■■□□□ 1.48
LIME1-203ENST00000465591 SRGAP2CP0DJJ0 459 aa24.3■■□□□ 1.48
LIME1-203ENST00000465591 SFPQP23246 707 aaKnown RBP eCLIP24.3■■□□□ 1.48
LIME1-203ENST00000465591 U2AF2P26368 475 aaKnown RBP eCLIP24.3■■□□□ 1.481e-9■■■■□ 23
LIME1-203ENST00000465591 TOB1P50616 345 aaPredicted RBP24.3■■□□□ 1.48
LIME1-203ENST00000465591 C4orf32Q8N8J7 132 aa24.3■■□□□ 1.48
LIME1-203ENST00000465591 UHRF1Q96T88 793 aaPredicted RBP24.3■■□□□ 1.48
LIME1-203ENST00000465591 TMEM117Q9H0C3 514 aa24.3■■□□□ 1.48
LIME1-203ENST00000465591 UPF2Q9HAU5 1272 aaKnown RBP24.3■■□□□ 1.48
LIME1-203ENST00000465591 ANKEF1Q9NU02 776 aa24.3■■□□□ 1.48
LIME1-203ENST00000465591 RNF216Q9NWF9 866 aaPredicted RBP24.3■■□□□ 1.48
LIME1-203ENST00000465591 MED24O75448 989 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 KCNA5P22460 613 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 IRS1P35568 1242 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 TECP42680 631 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 RARRES1P49788 294 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 GNL2Q13823 731 aaKnown RBP24.29■■□□□ 1.48
LIME1-203ENST00000465591 COL19A1Q14993 1142 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 NAALADL2Q58DX5 795 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 SPOUT1Q5T280 376 aaKnown RBP24.29■■□□□ 1.48
LIME1-203ENST00000465591 CATSPER4Q7RTX7 472 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 FERMT3Q86UX7 667 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 CATSPER3Q86XQ3 398 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 EXOC8Q8IYI6 725 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 IL27Q8NEV9 243 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 MTRQ99707 1265 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 INO80BQ9C086 356 aaPredicted RBP24.29■■□□□ 1.48
LIME1-203ENST00000465591 CHST12Q9NRB3 414 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 PIN4Q9Y237 131 aaKnown RBP24.29■■□□□ 1.48
LIME1-203ENST00000465591 PCDHGC5Q9Y5F6 944 aa24.29■■□□□ 1.48
LIME1-203ENST00000465591 GTF2F1P35269 517 aaKnown RBP eCLIP24.28■■□□□ 1.483e-6■□□□□ 10.3
LIME1-203ENST00000465591 PHKA2P46019 1235 aa24.28■■□□□ 1.48
LIME1-203ENST00000465591 HYAL1Q12794 435 aa24.28■■□□□ 1.48
LIME1-203ENST00000465591 ORC2Q13416 577 aaPredicted RBP24.28■■□□□ 1.48
LIME1-203ENST00000465591 COLGALT1Q8NBJ5 622 aa24.28■■□□□ 1.48
LIME1-203ENST00000465591 POF1BQ8WVV4 589 aa24.28■■□□□ 1.48
LIME1-203ENST00000465591 DACT1Q9NYF0 836 aa24.28■■□□□ 1.48
LIME1-203ENST00000465591 MEIS3P2A8K0S8 358 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 GAS2O43903 313 aaKnown RBP24.27■■□□□ 1.48
LIME1-203ENST00000465591 TRAPPC10P48553 1259 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 LONRF3Q496Y0 759 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 TWF2Q6IBS0 349 aaKnown RBP24.27■■□□□ 1.48
LIME1-203ENST00000465591 RNF149Q8NC42 400 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 GADD45GIP1Q8TAE8 222 aaPredicted RBP24.27■■□□□ 1.48
LIME1-203ENST00000465591 HELQQ8TDG4 1101 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 ASAP3Q8TDY4 903 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 TCP11Q8WWU5 503 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 LPPQ93052 612 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 TRAIPQ9BWF2 469 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 PCDHB6Q9Y5E3 794 aa24.27■■□□□ 1.48
LIME1-203ENST00000465591 H3BQ06 376 aaPredicted RBP24.26■■□□□ 1.47
LIME1-203ENST00000465591 HOXA2O43364 376 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 EOMESO95936 686 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 PBX3P40426 434 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 SRGAP1Q7Z6B7 1085 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 ADGRD2Q7Z7M1 963 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 PABPC5Q96DU9 382 aaKnown RBP24.26■■□□□ 1.47
LIME1-203ENST00000465591 TUFT1Q9NNX1 390 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 AGPAT5Q9NUQ2 364 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 PCDHB12Q9Y5F1 795 aa24.26■■□□□ 1.47
LIME1-203ENST00000465591 TNFRSF10AO00220 468 aa24.25■■□□□ 1.47
LIME1-203ENST00000465591 DGAT1O75907 488 aa24.25■■□□□ 1.47
LIME1-203ENST00000465591 FGF18O76093 207 aa24.25■■□□□ 1.47
LIME1-203ENST00000465591 HOXA11P31270 313 aaPredicted RBP24.25■■□□□ 1.47
LIME1-203ENST00000465591 ARL2P36404 184 aa24.25■■□□□ 1.47
LIME1-203ENST00000465591 LTBRP36941 435 aa24.25■■□□□ 1.47
LIME1-203ENST00000465591 LEXMQ3ZCV2 418 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms