RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 FAM155BO75949 473 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 NDUFB10O96000 172 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 ADH1AP07327 375 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 FGFR1P11362 822 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 CD59P13987 128 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 AKR1B1P15121 316 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 ADORA1P30542 326 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 DCTP40126 519 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 DHPSP49366 369 aaPredicted RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 METAP2P50579 478 aaKnown RBP eCLIP3.11□□□□□ -1.91
USP40-211ENST00000464956 RARSP54136 660 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 OXCT1P55809 520 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 FOXK1P85037 733 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 MGAT3Q09327 533 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 IKQ13123 557 aaPredicted RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 BAATQ14032 418 aaPredicted RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 RABL6Q3YEC7 729 aaPredicted RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 USP39Q53GS9 565 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 MUM1L1Q5H9M0 696 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 CCDC62Q6P9F0 684 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 SLC23A3Q6PIS1 610 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 SEPT14Q6ZU15 432 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 SLC24A5Q71RS6 500 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 G2E3Q7L622 706 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 RABEPKQ7Z6M1 372 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 DDX53Q86TM3 631 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 MARCH9Q86YJ5 346 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 SYT12Q8IV01 421 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 RPAP2Q8IXW5 612 aaPredicted RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 MINDY1Q8N5J2 469 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 ZNF248Q8NDW4 579 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 DNERQ8NFT8 737 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 SPATA3Q8NHX4 192 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 CEP76Q8TAP6 659 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 SNRNP27Q8WVK2 155 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 FGF13Q92913 245 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 ZNF707Q96C28 371 aaPredicted RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 ARHGAP9Q9BRR9 750 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 TRMT61BQ9BVS5 477 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 APOL6Q9BWW8 343 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 PRKD2Q9BZL6 878 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 NT5C3AQ9H0P0 336 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 PLEKHA4Q9H4M7 779 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 BICC1Q9H694 974 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 TUT1Q9H6E5 874 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 AGO3Q9H9G7 860 aaKnown RBP3.11□□□□□ -1.91
USP40-211ENST00000464956 SETD4Q9NVD3 440 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 TMEM161AQ9NX61 479 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 HMG20BQ9P0W2 317 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 CDY2AQ9Y6F7 541 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 FREM2Q5SZK8 3169 aa3.11□□□□□ -1.91
USP40-211ENST00000464956 URB1O60287 2271 aaKnown RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 NLRC5Q86WI3 1866 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 A1L4Q6 167 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 GOLGA8CPA6NN73 597 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 ALDH1L1O75891 902 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 ITGB2P05107 769 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 SYPP08247 313 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 CNPP09543 421 aaKnown RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 MYBP10242 640 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 EDNRBP24530 442 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 CALML3P27482 149 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 PPP2R1AP30153 589 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 HOXC13P31276 330 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 HOXD12P35452 270 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 HNF1BP35680 557 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 STAT2P52630 851 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 INHBCP55103 352 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 MLLT6P55198 1093 aaPredicted RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 BCAR1P56945 870 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 DYNLL1P63167 89 aaKnown RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 PTH1RQ03431 593 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 CALD1Q05682 793 aaKnown RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 KLRC3Q07444 240 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 NFX1Q12986 1120 aaKnown RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 NOLC1Q14978 699 aaKnown RBP eCLIP3.1□□□□□ -1.91
USP40-211ENST00000464956 NCAPHQ15003 741 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 SMAD1Q15797 465 aaKnown RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 USH1GQ495M9 461 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 ODR4Q5SWX8 454 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 GORABQ5T7V8 394 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 IER5Q5VY09 327 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 PI16Q6UXB8 463 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 LPCAT2Q7L5N7 544 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 TAOK1Q7L7X3 1001 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 GRASPQ7Z6J2 395 aaPredicted RBP3.1□□□□□ -1.91
USP40-211ENST00000464956 ADGRA1Q86SQ6 560 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 FAM160B2Q86V87 743 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 TMPRSS12Q86WS5 348 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 ZNF280BQ86YH2 543 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 C8orf58Q8NAV2 365 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 CHURC1Q8WUH1 139 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 HDAC7Q8WUI4 952 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 ELSPBP1Q96BH3 223 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 KAZALD1Q96I82 304 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 SPATA33Q96N06 139 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 CASD1Q96PB1 797 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 GAD1Q99259 594 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 CDC6Q99741 560 aa3.1□□□□□ -1.91
USP40-211ENST00000464956 ADAM2Q99965 735 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms