RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 KSR1Q8IVT5 923 aa19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 SLFN12Q8IYM2 578 aa19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 FDXACB1Q9BRP7 624 aaPredicted RBP19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 C11orf84Q9BUA3 381 aaPredicted RBP19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 CYP26B1Q9NR63 512 aa19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 BMP2KQ9NSY1 1161 aaPredicted RBP19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 SUCLA2Q9P2R7 463 aaPredicted RBP19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 RWDD3Q9Y3V2 267 aa19.02■□□□□ 0.64
PRPF40A-204ENST00000450303 VCANP13611 3396 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 ZBTB39O15060 712 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 FGFR1P11362 822 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 ZSCAN20P17040 1043 aaPredicted RBP19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 NCLP19338 710 aaKnown RBP19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 SPIRE1Q08AE8 756 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 CALCRLQ16602 461 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 SPOUT1Q5T280 376 aaKnown RBP19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 FAM173BQ6P4H8 233 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 RHPN2Q8IUC4 686 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 CEP170P1Q96L14 293 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 UHRF1Q96T88 793 aaPredicted RBP19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 LXNQ9BS40 222 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 ATP6V0A4Q9HBG4 840 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 HCSTQ9UBK5 93 aa19.01■□□□□ 0.63
PRPF40A-204ENST00000450303 TTC28Q96AY4 2481 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 DKC1O60832 514 aaKnown RBP eCLIP19■□□□□ 0.63
PRPF40A-204ENST00000450303 TXKP42681 527 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 TOB1P50616 345 aaPredicted RBP19■□□□□ 0.63
PRPF40A-204ENST00000450303 FAM189BP81408 668 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 DNM1Q05193 864 aaKnown RBP19■□□□□ 0.63
PRPF40A-204ENST00000450303 ZNF174Q15697 407 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 CSPP1Q1MSJ5 1256 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 TIGD5Q53EQ6 642 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 EP400NLQ6ZTU2 488 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 TPH2Q8IWU9 490 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 RNF169Q8NCN4 708 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 GBP4Q96PP9 640 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 GCOM2Q9BZD3 368 aaPredicted RBP19■□□□□ 0.63
PRPF40A-204ENST00000450303 UBE2ZQ9H832 354 aaPredicted RBP19■□□□□ 0.63
PRPF40A-204ENST00000450303 TMEM161AQ9NX61 479 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 PCDHA12Q9UN75 941 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 PLAGL2Q9UPG8 496 aa19■□□□□ 0.63
PRPF40A-204ENST00000450303 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 NEMFO60524 1076 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 ITGB1P05556 798 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 KCNA5P22460 613 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 YWHABP31946 246 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 MCM7P33993 719 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 C4orf19Q8IY42 314 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 ZNF710Q8N1W2 664 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 KLHL23Q8NBE8 558 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 TMEM143Q96AN5 459 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 NLRP4Q96MN2 994 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 EIF2AK1Q9BQI3 630 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 PLVAPQ9BX97 442 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 SCAND2PQ9GZW5 306 aaPredicted RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 TMEM60Q9H2L4 133 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 NSUN3Q9H649 340 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 TTC12Q9H892 705 aaPredicted RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 TFIP11Q9UBB9 837 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 PCDHB6Q9Y5E3 794 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 PLXNA4Q9HCM2 1894 aa18.99■□□□□ 0.63
PRPF40A-204ENST00000450303 ARID2Q68CP9 1835 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 A0A087WWV3 80 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 TNFRSF10AO00220 468 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 LAD1O00515 517 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 SLITRK3O94933 977 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 YEATS4O95619 227 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 DNAJB1P25685 340 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 POLGP54098 1239 aaPredicted RBP18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 STK38Q15208 465 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 SF3A1Q15459 793 aaKnown RBP18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 XKR9Q5GH70 373 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 FAM43BQ6ZT52 329 aaPredicted RBP18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 ECHDC2Q86YB7 292 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 SPPL3Q8TCT6 385 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 USP28Q96RU2 1077 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 LMAN2LQ9H0V9 348 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 ELAC1Q9H777 363 aaKnown RBP18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 ZSWIM4Q9H7M6 989 aa18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 TYW1Q9NV66 732 aaKnown RBP18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 RNF216Q9NWF9 866 aaPredicted RBP18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 SPTBN5Q9NRC6 3674 aaKnown RBP18.98■□□□□ 0.63
PRPF40A-204ENST00000450303 CDC42EP1Q00587 391 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 CEBPZQ03701 1054 aaKnown RBP18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 CAMK1Q14012 370 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 OTUD6AQ7L8S5 288 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 SLC7A3Q8WY07 619 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 P2RX5Q93086 422 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 MTMR9Q96QG7 549 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 JPH2Q9BR39 696 aaPredicted RBP18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 IGFLR1Q9H665 355 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 DHX33Q9H6R0 707 aaKnown RBP18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 RNF19AQ9NV58 838 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 CLIC4Q9Y696 253 aa18.97■□□□□ 0.63
PRPF40A-204ENST00000450303 H3BQ06 376 aaPredicted RBP18.96■□□□□ 0.63
PRPF40A-204ENST00000450303 SRGAP2CP0DJJ0 459 aa18.96■□□□□ 0.63
PRPF40A-204ENST00000450303 MCM4P33991 863 aa18.96■□□□□ 0.63
PRPF40A-204ENST00000450303 GTF2F1P35269 517 aaKnown RBP eCLIP18.96■□□□□ 0.63
PRPF40A-204ENST00000450303 RFC5P40937 340 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms