RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 ERLIN2O94905 339 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 F13A1P00488 732 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 SKIP12755 728 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 IGFBP4P22692 258 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 BTG3Q14201 252 aaPredicted RBP18.18■□□□□ 0.5
SF3A1-204ENST00000447376 PCBP1Q15365 356 aaKnown RBP eCLIP18.18■□□□□ 0.5
SF3A1-204ENST00000447376 FOXD4L5Q5VV16 416 aaPredicted RBP18.18■□□□□ 0.5
SF3A1-204ENST00000447376 PADI6Q6TGC4 694 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 KSR1Q8IVT5 923 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 FOXD4L4Q8WXT5 416 aaPredicted RBP18.18■□□□□ 0.5
SF3A1-204ENST00000447376 CALML4Q96GE6 196 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 CERS4Q9HA82 394 aa18.18■□□□□ 0.5
SF3A1-204ENST00000447376 PIN4Q9Y237 131 aaKnown RBP18.18■□□□□ 0.5
SF3A1-204ENST00000447376 LONP1P36776 959 aaKnown RBP18.17■□□□□ 0.5
SF3A1-204ENST00000447376 UBA7P41226 1012 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 POU5F1BQ06416 359 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 FAM102BQ5T8I3 360 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 TWF2Q6IBS0 349 aaKnown RBP18.17■□□□□ 0.5
SF3A1-204ENST00000447376 RTN4RL1Q86UN2 441 aaPredicted RBP18.17■□□□□ 0.5
SF3A1-204ENST00000447376 ABI1Q8IZP0 508 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 SP7Q8TDD2 431 aaPredicted RBP18.17■□□□□ 0.5
SF3A1-204ENST00000447376 LINC01599Q8WXQ3 324 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 POLR3FQ9H1D9 316 aaPredicted RBP18.17■□□□□ 0.5
SF3A1-204ENST00000447376 BHMT2Q9H2M3 363 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 ELAC1Q9H777 363 aaKnown RBP18.17■□□□□ 0.5
SF3A1-204ENST00000447376 XPNPEP1Q9NQW7 623 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 TMEM161AQ9NX61 479 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 MTUS1Q9ULD2 1270 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 ATP6V1DQ9Y5K8 247 aa18.17■□□□□ 0.5
SF3A1-204ENST00000447376 A0A087WWV3 80 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 INO80B-WBP1J3KQ70 363 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 SLC26A4O43511 780 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 MGEA5O60502 916 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 CSDE1O75534 798 aaKnown RBP18.16■□□□□ 0.5
SF3A1-204ENST00000447376 DGKIO75912 1065 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 EYA4O95677 639 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 FGFR4P22455 802 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 ERVK-21P61565 698 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 PPP2R5AQ15172 486 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 ATL3Q6DD88 541 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 MAEAQ7L5Y9 396 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 ZBTB8OSQ8IWT0 167 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 FBXO22Q8NEZ5 403 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 IFT74Q96LB3 600 aa18.16■□□□□ 0.5
SF3A1-204ENST00000447376 COL4A6Q14031 1691 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 LRRIQ4A6NIV6 560 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 PP2D1A8MPX8 630 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 C9IYK1 514 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 CYP11B2P19099 503 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 CDC25AP30304 524 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 TXLNAP40222 546 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 RAB27AP51159 221 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 NUCB2P80303 420 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 DSC3Q14574 896 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 FAM173BQ6P4H8 233 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 CABP7Q86V35 215 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 CMTR2Q8IYT2 770 aaKnown RBP18.15■□□□□ 0.5
SF3A1-204ENST00000447376 RNF169Q8NCN4 708 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 MAFAQ8NHW3 353 aaPredicted RBP18.15■□□□□ 0.5
SF3A1-204ENST00000447376 KIFAP3Q92845 792 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 C2orf40Q9H1Z8 148 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 IFT122Q9HBG6 1241 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 CLIC4Q9Y696 253 aa18.15■□□□□ 0.5
SF3A1-204ENST00000447376 BRD1O95696 1058 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 SSBP05455 408 aaKnown RBP eCLIP18.14■□□□□ 0.49
SF3A1-204ENST00000447376 AXLP30530 894 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 CTNNB1P35222 781 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 ARL2P36404 184 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 CEBPZQ03701 1054 aaKnown RBP18.14■□□□□ 0.49
SF3A1-204ENST00000447376 PKP1Q13835 747 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 IL17AQ16552 155 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 SPOUT1Q5T280 376 aaKnown RBP18.14■□□□□ 0.49
SF3A1-204ENST00000447376 RSPH1Q8WYR4 309 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 CFAP45Q9UL16 551 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 TTC3P53804 2025 aa18.14■□□□□ 0.49
SF3A1-204ENST00000447376 A0A0U1RQF3 1178 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 TBKBP1A7MCY6 615 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 E9PMD0 336 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 EOMESO95936 686 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 PTENP60484 403 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 CAPSQ13938 189 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 STK38Q15208 465 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 TMEM132AQ24JP5 1023 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 PAN2Q504Q3 1202 aaKnown RBP18.13■□□□□ 0.49
SF3A1-204ENST00000447376 TMEM192Q8IY95 271 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 DEPTORQ8TB45 409 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 ASAP3Q8TDY4 903 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 ZNF689Q96CS4 500 aaPredicted RBP18.13■□□□□ 0.49
SF3A1-204ENST00000447376 USP28Q96RU2 1077 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 TIPINQ9BVW5 301 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 NFKBIZQ9BYH8 718 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 AAASQ9NRG9 546 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 AGPAT5Q9NUQ2 364 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 KCNG1Q9UIX4 513 aa18.13■□□□□ 0.49
SF3A1-204ENST00000447376 ARHGEF15O94989 841 aa18.12■□□□□ 0.49
SF3A1-204ENST00000447376 RB1P06400 928 aa18.12■□□□□ 0.49
SF3A1-204ENST00000447376 GLRA2P23416 452 aa18.12■□□□□ 0.49
SF3A1-204ENST00000447376 FAM189BP81408 668 aa18.12■□□□□ 0.49
SF3A1-204ENST00000447376 SLC39A14Q15043 492 aa18.12■□□□□ 0.49
SF3A1-204ENST00000447376 ECM1Q16610 540 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms