RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ALG13Q9NP73 1137 aaKnown RBP21.28■■□□□ 1
SF3A1-202ENST00000411423 PPME1Q9Y570 386 aa21.28■■□□□ 1
SF3A1-202ENST00000411423 CSPG5O95196 566 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 ITGB1P05556 798 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 MRPS5P82675 430 aaKnown RBP21.27■■□□□ 1
SF3A1-202ENST00000411423 GNL2Q13823 731 aaKnown RBP21.27■■□□□ 1
SF3A1-202ENST00000411423 ECM1Q16610 540 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 TCEAL5Q5H9L2 206 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 CLLU1OSQ5K130 101 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 FAM43BQ6ZT52 329 aaPredicted RBP21.27■■□□□ 1
SF3A1-202ENST00000411423 FERMT3Q86UX7 667 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 MTRQ99707 1265 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 ATP6V0A4Q9HBG4 840 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 ANKEF1Q9NU02 776 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 PLAGL2Q9UPG8 496 aa21.27■■□□□ 1
SF3A1-202ENST00000411423 MUC3AQ02505 3323 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 A0A0U1RQF3 1178 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 SRGAP2CP0DJJ0 459 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 ZSCAN20P17040 1043 aaPredicted RBP21.26■□□□□ 0.99
SF3A1-202ENST00000411423 TRAPPC10P48553 1259 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 CDC42EP1Q00587 391 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 ORC2Q13416 577 aaPredicted RBP21.26■□□□□ 0.99
SF3A1-202ENST00000411423 IL17AQ16552 155 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 KLHL23Q8NBE8 558 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 ASAP3Q8TDY4 903 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 PSPC1Q8WXF1 523 aaKnown RBP21.26■□□□□ 0.99
SF3A1-202ENST00000411423 C11orf84Q9BUA3 381 aaPredicted RBP21.26■□□□□ 0.99
SF3A1-202ENST00000411423 TYW1Q9NV66 732 aaKnown RBP21.26■□□□□ 0.99
SF3A1-202ENST00000411423 RWDD3Q9Y3V2 267 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 PLXNA4Q9HCM2 1894 aa21.26■□□□□ 0.99
SF3A1-202ENST00000411423 MEIS3P2A8K0S8 358 aa21.25■□□□□ 0.99
SF3A1-202ENST00000411423 BMP1P13497 986 aa21.25■□□□□ 0.99
SF3A1-202ENST00000411423 POTEGQ6S5H5 508 aa21.25■□□□□ 0.99
SF3A1-202ENST00000411423 SPPL3Q8TCT6 385 aa21.25■□□□□ 0.99
SF3A1-202ENST00000411423 PLVAPQ9BX97 442 aa21.25■□□□□ 0.99
SF3A1-202ENST00000411423 TUFT1Q9NNX1 390 aa21.25■□□□□ 0.99
SF3A1-202ENST00000411423 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.24■□□□□ 0.99
SF3A1-202ENST00000411423 SFPQP23246 707 aaKnown RBP eCLIP21.24■□□□□ 0.99
SF3A1-202ENST00000411423 IRS1P35568 1242 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 ARL2P36404 184 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 MCM2P49736 904 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 PTGDRQ13258 359 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 PTPROQ16827 1216 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 LONRF3Q496Y0 759 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 CATSPER4Q7RTX7 472 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 RNF149Q8NC42 400 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 RNF169Q8NCN4 708 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 LPPQ93052 612 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 P2RX5Q93086 422 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 HLA-CQ95604 372 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 POLR3CQ9BUI4 534 aaPredicted RBP21.24■□□□□ 0.99
SF3A1-202ENST00000411423 GPRC5CQ9NQ84 441 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.24■□□□□ 0.99
SF3A1-202ENST00000411423 NOL7Q9UMY1 257 aaKnown RBP21.24■□□□□ 0.99
SF3A1-202ENST00000411423 PIN4Q9Y237 131 aaKnown RBP21.24■□□□□ 0.99
SF3A1-202ENST00000411423 PCDHGC5Q9Y5F6 944 aa21.24■□□□□ 0.99
SF3A1-202ENST00000411423 GAS2O43903 313 aaKnown RBP21.23■□□□□ 0.99
SF3A1-202ENST00000411423 USO1O60763 962 aaKnown RBP21.23■□□□□ 0.99
SF3A1-202ENST00000411423 GLRA2P23416 452 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 HOXA11P31270 313 aaPredicted RBP21.23■□□□□ 0.99
SF3A1-202ENST00000411423 GTF2F1P35269 517 aaKnown RBP eCLIP21.23■□□□□ 0.99
SF3A1-202ENST00000411423 PHKA2P46019 1235 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 FXR2P51116 673 aaKnown RBP eCLIP21.23■□□□□ 0.992e-6■■□□□ 11.9
SF3A1-202ENST00000411423 CAPSQ13938 189 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 MCTP1Q6DN14 999 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 COLGALT1Q8NBJ5 622 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 IL27Q8NEV9 243 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 HELQQ8TDG4 1101 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 TCP11Q8WWU5 503 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 NECAB3Q96P71 396 aaPredicted RBP21.23■□□□□ 0.99
SF3A1-202ENST00000411423 INO80BQ9C086 356 aaPredicted RBP21.23■□□□□ 0.99
SF3A1-202ENST00000411423 TMEM117Q9H0C3 514 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 NSUN3Q9H649 340 aaKnown RBP21.23■□□□□ 0.99
SF3A1-202ENST00000411423 CHST12Q9NRB3 414 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 AGPAT5Q9NUQ2 364 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 COG5Q9UP83 839 aa21.23■□□□□ 0.99
SF3A1-202ENST00000411423 PP2D1A8MPX8 630 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 DGAT1O75907 488 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 RPA1P27694 616 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 PBX3P40426 434 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 CUL4AQ13619 759 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 TIGD5Q53EQ6 642 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 UBXN11Q5T124 520 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 MAEAQ7L5Y9 396 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 SRGAP1Q7Z6B7 1085 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 EXOC8Q8IYI6 725 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 TRAIPQ9BWF2 469 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 LMAN2LQ9H0V9 348 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 UBE2ZQ9H832 354 aaPredicted RBP21.22■□□□□ 0.99
SF3A1-202ENST00000411423 SMC3Q9UQE7 1217 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 TCF20Q9UGU0 1960 aaKnown RBP21.22■□□□□ 0.99
SF3A1-202ENST00000411423 MYO7AQ13402 2215 aa21.22■□□□□ 0.99
SF3A1-202ENST00000411423 XRCC6P12956 609 aaKnown RBP eCLIP21.21■□□□□ 0.99
SF3A1-202ENST00000411423 PTENP60484 403 aa21.21■□□□□ 0.99
SF3A1-202ENST00000411423 HYAL1Q12794 435 aa21.21■□□□□ 0.99
SF3A1-202ENST00000411423 COL19A1Q14993 1142 aa21.21■□□□□ 0.99
SF3A1-202ENST00000411423 SPOUT1Q5T280 376 aaKnown RBP21.21■□□□□ 0.99
SF3A1-202ENST00000411423 TWF2Q6IBS0 349 aaKnown RBP21.21■□□□□ 0.99
SF3A1-202ENST00000411423 ADGRD2Q7Z7M1 963 aa21.21■□□□□ 0.99
SF3A1-202ENST00000411423 IGSF22Q8N9C0 903 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms