RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PDZD8Q8NEN9 1154 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 WDR66Q8TBY9 1149 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 NYXQ9GZU5 481 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 TAF6LQ9Y6J9 622 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 C10orf71Q711Q0 1435 aa7.95□□□□□ -1.14
USP40-202ENST00000409945 B4E1Z4 1266 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 ERVV-1B6SEH8 477 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 MAN2B1O00754 1011 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 NRDCO43847 1150 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 KRT37O76014 449 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 ENDOUP21128 410 aaKnown RBP7.94□□□□□ -1.14
USP40-202ENST00000409945 HSP90AB3PQ58FF7 597 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 OTOP3Q7RTS5 596 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 NLRX1Q86UT6 975 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 FERMT3Q86UX7 667 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 TP53INP2Q8IXH6 220 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 CMIPQ8IY22 773 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 FAM9BQ8IZU0 186 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 AHI1Q8N157 1196 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 HOMER2Q9NSB8 354 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP40-202ENST00000409945 ACSL6Q9UKU0 697 aa7.94□□□□□ -1.14
USP40-202ENST00000409945 G3BP2Q9UN86 482 aaKnown RBP7.94□□□□□ -1.14
USP40-202ENST00000409945 PRAMEF22A3QJZ6 481 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 CAMTA2O94983 1202 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 HPXP02790 462 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 ZBTB48P10074 688 aaPredicted RBP7.93□□□□□ -1.14
USP40-202ENST00000409945 GLI4P10075 376 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 GNAT1P11488 350 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 GUCY2FP51841 1108 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 DDR1Q08345 913 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 SLC14A2Q15849 920 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 TBC1D9BQ66K14 1250 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 ANKS4BQ8N8V4 417 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP40-202ENST00000409945 PDLIM7Q9NR12 457 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 DBF4Q9UBU7 674 aaPredicted RBP7.93□□□□□ -1.14
USP40-202ENST00000409945 B4GALT6Q9UBX8 382 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 CTNND2Q9UQB3 1225 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 NIP7Q9Y221 180 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP40-202ENST00000409945 CHD4Q14839 1912 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 SCN7AQ01118 1682 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 A0A0G2JLW4 131 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 H7BY64 318 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 DPEP1P16444 411 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 FLT3P36888 993 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 PIP4K2AP48426 406 aaPredicted RBP7.93□□□□□ -1.14
USP40-202ENST00000409945 NOSTRINQ8IVI9 506 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 ABI1Q8IZP0 508 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 USP33Q8TEY7 942 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 BRIP1Q9BX63 1249 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 ASPSCR1Q9BZE9 553 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 TMX1Q9H3N1 280 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 BCAS3Q9H6U6 928 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 EMC7Q9NPA0 242 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 PCMTD2Q9NV79 361 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 GPR160Q9UJ42 338 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 MCM8Q9UJA3 840 aa7.93□□□□□ -1.14
USP40-202ENST00000409945 MAP3K15Q6ZN16 1313 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 KIF13BQ9NQT8 1826 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 TGM5O43548 720 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 FKBP9O95302 570 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 NPTXRO95502 500 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 SCNN1BP51168 640 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 WWC2Q6AWC2 1192 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 FKBP9P1Q75LS8 142 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 PPP1R42Q7Z4L9 355 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 C2CD5Q86YS7 1000 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 TTC1Q99614 292 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 DDX21Q9NR30 783 aaKnown RBP eCLIP7.92□□□□□ -1.14
USP40-202ENST00000409945 OXSMQ9NWU1 459 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 HYPKQ9NX55 129 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 PXDNLA1KZ92 1463 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 IL16Q14005 1332 aa7.92□□□□□ -1.14
USP40-202ENST00000409945 PTX3P26022 381 aaPredicted RBP7.91□□□□□ -1.14
USP40-202ENST00000409945 GTF2A2P52657 109 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 IL2P60568 153 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 LACTBP83111 547 aaPredicted RBP7.91□□□□□ -1.14
USP40-202ENST00000409945 PARP10Q53GL7 1025 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 FAM47CQ5HY64 1035 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 OTOP1Q7RTM1 612 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 TTLL6Q8N841 843 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 OR2W6PQ8NHA6 318 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 STK31Q9BXU1 1019 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 RNF32Q9H0A6 362 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 TMX4Q9H1E5 349 aaPredicted RBP7.91□□□□□ -1.14
USP40-202ENST00000409945 SLC27A2O14975 620 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 DDX58O95786 925 aaKnown RBP7.91□□□□□ -1.14
USP40-202ENST00000409945 NAT1P18440 290 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 SLC9A1P19634 815 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 THBS2P35442 1172 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 GDNFP39905 211 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 CCDC30Q5VVM6 783 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 WDR63Q8IWG1 891 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 C2orf69Q8N8R5 385 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 USP7Q93009 1102 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 ZNF622Q969S3 477 aaKnown RBP eCLIP7.91□□□□□ -1.14
USP40-202ENST00000409945 MYH16Q9H6N6 1097 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 IFT22Q9H7X7 185 aa7.91□□□□□ -1.14
USP40-202ENST00000409945 BCORQ6W2J9 1755 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms