RNA–Protein interactions for RNA: ENST00000392981.6

XRN1-202, Transcript of 5'-3' exoribonuclease 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene XRN1, Length 5,383 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-202ENST00000392981 TRIM47Q96LD4 638 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ACE2Q9BYF1 805 aaPredicted RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.94□□□□□ -1.78
XRN1-202ENST00000392981 SMG9Q9H0W8 520 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 IPPKQ9H8X2 491 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 DMRT3Q9NQL9 472 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 A0A087WZG4 1122 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ACKR2O00590 384 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PCDHGA12O60330 932 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 EEF2P13639 858 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 GALNSP34059 522 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 COPAP53621 1224 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 RPP30P78346 268 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 MPP3Q13368 585 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SLC14A2Q15849 920 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 THAP5Q7Z6K1 395 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 CARNMT1Q8N4J0 409 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 OTUD6BQ8N6M0 293 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 KLHDC4Q8TBB5 520 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 CSGALNACT1Q8TDX6 532 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 GMCL1Q96IK5 515 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 BOCQ9BWV1 1114 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 LMAN2LQ9H0V9 348 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 MAGEH1Q9H213 219 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 DHX36Q9H2U1 1008 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 PFDN4Q9NQP4 134 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PDLIM7Q9NR12 457 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ARHGEF3Q9NR81 526 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ZNHIT6Q9NWK9 470 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 TBC1D29Q9UFV1 150 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PCDHGB5Q9Y5G0 923 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PCDHGA9Q9Y5G4 932 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 PCDHGA7Q9Y5G6 932 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PCDHGA6Q9Y5G7 932 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PCDHGA3Q9Y5H0 932 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 AP1M2Q9Y6Q5 423 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 A0A1B0GTH6 734 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 NUDT19A8MXV4 375 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ATXN7O15265 892 aaPredicted RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 TADA3O75528 432 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 HNRNPA1P09651 372 aaKnown RBP eCLIP3.94□□□□□ -1.78
XRN1-202ENST00000392981 HOXB1P14653 301 aaPredicted RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 MSH2P43246 934 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 HSD17B7P56937 341 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 POU4F1Q01851 419 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 GPR68Q15743 365 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 TSTQ16762 297 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 KCTD6Q8NC69 237 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 OR6J1Q8NGC5 347 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ASB12Q8WXK4 309 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PHKBQ93100 1093 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 RGMAQ96B86 450 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 CNTNAP3BQ96NU0 1288 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 KCNC2Q96PR1 638 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 HEPHQ9BQS7 1158 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 GPATCH1Q9BRR8 931 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 CNTNAP3Q9BZ76 1288 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PCDHA6Q9UN73 950 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SRCAPQ6ZRS2 3230 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 TSPAN9O75954 239 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 CD33P20138 364 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SAT1P21673 171 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ITPKAP23677 461 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 PGM1P36871 562 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 TUBP50607 506 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 C19orf57Q0VDD7 668 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SEMA5AQ13591 1074 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 ZACNQ401N2 412 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SLC44A4Q53GD3 710 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 FAM69AQ5T7M9 428 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SAMD14Q8IZD0 417 aaPredicted RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 GALNT15Q8N3T1 639 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 GDAP1L1Q96MZ0 367 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 POP1Q99575 1024 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 FHDC1Q9C0D6 1143 aaPredicted RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 EPS8L2Q9H6S3 715 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SYNCQ9H7C4 482 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 DDX21Q9NR30 783 aaKnown RBP eCLIP3.94□□□□□ -1.78
XRN1-202ENST00000392981 RIC8BQ9NVN3 520 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 CLDND1Q9NY35 253 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 STXBP5LQ9Y2K9 1186 aa3.94□□□□□ -1.78
XRN1-202ENST00000392981 SF3B6Q9Y3B4 125 aaKnown RBP3.94□□□□□ -1.78
XRN1-202ENST00000392981 FKTNO75072 461 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 GGPS1O95749 300 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 P4HA1P13674 534 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 CD247P20963 164 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 C5AR1P21730 350 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 HNF4AP41235 474 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 SUMO3P55854 103 aaPredicted RBP3.93□□□□□ -1.78
XRN1-202ENST00000392981 HSP90AB3PQ58FF7 597 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 TMEM240Q5SV17 173 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 GPR155Q7Z3F1 870 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 ARHGEF25Q86VW2 580 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 HIPK4Q8NE63 616 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 APPL2Q8NEU8 664 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 TAF4BQ92750 862 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 TNPO1Q92973 898 aaKnown RBP3.93□□□□□ -1.78
XRN1-202ENST00000392981 NCAPGQ9BPX3 1015 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 ABCG4Q9H172 646 aa3.93□□□□□ -1.78
XRN1-202ENST00000392981 SH3BP1Q9Y3L3 701 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms