RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 BPIFB4P59827 614 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 MAGOHP61326 146 aaKnown RBP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 KIF5AQ12840 1032 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 BTG3Q14201 252 aaPredicted RBP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 SETDB1Q15047 1291 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 TRIM42Q8IWZ5 723 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 PHKBQ93100 1093 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 MAGOHBQ96A72 148 aaKnown RBP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 LZTS2Q9BRK4 669 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 AATFQ9NY61 560 aaKnown RBP eCLIP6.08□□□□□ -1.44
CSDE1-202ENST00000339438 GJD2Q9UKL4 321 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 GMEB1Q9Y692 573 aa6.08□□□□□ -1.44
CSDE1-202ENST00000339438 GCOM1H8Y6P7 765 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PRC1O43663 620 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 MYZAPP0CAP1 466 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 HTRA3P83110 453 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 SEPT2Q15019 361 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 TAF11Q15544 211 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 FAM133BQ5BKY9 247 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 MIIPQ5JXC2 388 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 SFMBT2Q5VUG0 894 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 CGB2Q6NT52 195 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PDXDC2PQ6P474 469 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 APBB1IPQ7Z5R6 666 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 LRRC34Q8IZ02 419 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 ASAP3Q8TDY4 903 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 MAIP1Q8WWC4 291 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 GATA6Q92908 595 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 WDR18Q9BV38 432 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 THAP9Q9H5L6 903 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PNMA3Q9UL41 463 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 MROH7Q68CQ1 1323 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 E7ENQ6 273 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 SNX3O60493 162 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 GJB6O95452 261 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 MMP1P03956 469 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 RASA1P20936 1047 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 EIF4BP23588 611 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 ZAP70P43403 619 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 UBXN1Q04323 297 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 DEUP1Q05D60 604 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 KCTD19Q17RG1 926 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 LRRC23Q53EV4 343 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 ZC2HC1CQ53FD0 456 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 DAB2IPQ5VWQ8 1189 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 KANK3Q6NY19 840 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 FITM2Q8N6M3 262 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 FAM151AQ8WW52 585 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PTPRN2Q92932 1015 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 OSBP2Q969R2 916 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 DTNBP1Q96EV8 351 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 STRBPQ96SI9 672 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PSMB7Q99436 277 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 NDNQ99608 321 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 GLIS2Q9BZE0 524 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PUS7LQ9H0K6 701 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 DMAP1Q9NPF5 467 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 ATXN10Q9UBB4 475 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 CTNNAL1Q9UBT7 734 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 NOVA2Q9UNW9 492 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 LUC7L2Q9Y383 392 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 A0A1W2PQJ5 194 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 RBM47A0AV96 593 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 BTBD18B2RXH4 712 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 HOXA7P31268 230 aaPredicted RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PEX5P50542 639 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 ZNF131P52739 623 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 COPS2P61201 443 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 FUT2Q10981 343 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 SFSWAPQ12872 951 aaKnown RBP6.07□□□□□ -1.44
CSDE1-202ENST00000339438 UBE3CQ15386 1083 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 DIXDC1Q155Q3 683 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 CCDC38Q502W7 563 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 CYB5R4Q7L1T6 521 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 TMC3Q7Z5M5 1100 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 KIF2BQ8N4N8 673 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 KCNV2Q8TDN2 545 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 SCFD2Q8WU76 684 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 IFT81Q8WYA0 676 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PHACTR1Q9C0D0 580 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 ECT2Q9H8V3 914 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 GALNT8Q9NY28 637 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 PCDHA13Q9Y5I0 950 aa6.07□□□□□ -1.44
CSDE1-202ENST00000339438 A0A1W2PRG0 241 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 LRRD1A4D1F6 860 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 F8VZ95 297 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 EPHB6O15197 1021 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PLA2G6O60733 806 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PARP1P09874 1014 aaKnown RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 CALB2P22676 271 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 HAND2P61296 217 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 TNIP1Q15025 636 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 FIGNQ5HY92 759 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 EARS2Q5JPH6 523 aaKnown RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 UBAP2Q5T6F2 1119 aaKnown RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 C16orf86Q6ZW13 317 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 ZSCAN29Q8IWY8 852 aaPredicted RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.06□□□□□ -1.441e-6■■■■■ 34.7
CSDE1-202ENST00000339438 TIPINQ9BVW5 301 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 DPH5Q9H2P9 285 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms