RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 ERICH1Q86X53 443 aa8.14□□□□□ -1.11
SF3B3-201ENST00000302516 FMR1NBQ8N0W7 255 aaPredicted RBP8.14□□□□□ -1.11
SF3B3-201ENST00000302516 DCLK2Q8N568 766 aa8.14□□□□□ -1.11
SF3B3-201ENST00000302516 RPF1Q9H9Y2 349 aaKnown RBP8.14□□□□□ -1.11
SF3B3-201ENST00000302516 ZRANB2O95218 330 aaKnown RBP eCLIP8.14□□□□□ -1.11
SF3B3-201ENST00000302516 PDHA1P08559 390 aa8.14□□□□□ -1.11
SF3B3-201ENST00000302516 AP3M2P53677 418 aa8.14□□□□□ -1.11
SF3B3-201ENST00000302516 SRLQ86TD4 932 aa8.14□□□□□ -1.11
SF3B3-201ENST00000302516 DNAJC10Q8IXB1 793 aa8.14□□□□□ -1.11
SF3B3-201ENST00000302516 RIBC1Q8N443 379 aaPredicted RBP8.14□□□□□ -1.11
SF3B3-201ENST00000302516 MPP6Q9NZW5 540 aa8.14□□□□□ -1.11
SF3B3-201ENST00000302516 PAIP2BQ9ULR5 123 aaKnown RBP8.14□□□□□ -1.11
SF3B3-201ENST00000302516 PITPNM2Q9BZ72 1349 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 CDH2P19022 906 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 MED21Q13503 144 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 LRRC24Q50LG9 513 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 DGKHQ86XP1 1220 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 FSD1LQ9BXM9 530 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ETNK1Q9HBU6 452 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 UBN1Q9NPG3 1134 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 SERPINB13Q9UIV8 391 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 AKT3Q9Y243 479 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 PPME1Q9Y570 386 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ZHX2Q9Y6X8 837 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 GOLGA8SH3BPF8 625 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 RAD23BP54727 409 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 CDKL3Q8IVW4 592 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 RFFLQ8WZ73 363 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 LRRC4Q9HBW1 653 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 SLC8A2Q9UPR5 921 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ZBBXA8MT70 800 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 SNX2O60749 519 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 GTF2IP78347 998 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 PFKFB3Q16875 520 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 FRMD5Q7Z6J6 570 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ZNF564Q8TBZ8 553 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 CYTH2Q99418 400 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 MSTO1Q9BUK6 570 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 GOLPH3LQ9H4A5 285 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 WARS2Q9UGM6 360 aaKnown RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 CYP2C19P33261 490 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ARFIP2P53365 341 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 NR5A1Q13285 461 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 C16orf89Q6UX73 402 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 PALMDQ9NP74 551 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 COPG1Q9Y678 874 aaKnown RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 SPAG6O75602 509 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ATP1A3P13637 1013 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ROR1Q01973 937 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 HIC1Q14526 733 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 TTC17Q96AE7 1141 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 GPBP1L1Q9HC44 474 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 PKD2L2Q9NZM6 624 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 NEXMIFQ5QGS0 1516 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 MRPS35P82673 323 aaKnown RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 CYP27A1Q02318 531 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 HP1BP3Q5SSJ5 553 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 OTUB1Q96FW1 271 aaPredicted RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 NAF1Q96HR8 494 aaKnown RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 IL1RAPL1Q9NZN1 696 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 SPOUT1Q5T280 376 aaKnown RBP8.13□□□□□ -1.11
SF3B3-201ENST00000302516 STX19Q8N4C7 294 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 CEP170P1Q96L14 293 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 TIPINQ9BVW5 301 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 SMYD3Q9H7B4 428 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 ADGRG1Q9Y653 693 aa8.13□□□□□ -1.11
SF3B3-201ENST00000302516 C16orf96A6NNT2 1141 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 PPEF1O14829 653 aaPredicted RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 AARSP49588 968 aaKnown RBP eCLIP8.12□□□□□ -1.111e-6■■■□□ 15.6
SF3B3-201ENST00000302516 ABCE1P61221 599 aaKnown RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 KCTD2Q14681 263 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 TRIP13Q15645 432 aaPredicted RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 SYNJ2BP-COX16A0A087WUM0 186 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 CCDC78A2IDD5 438 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 HSPA1AP0DMV8 641 aaKnown RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 HSPA1BP0DMV9 641 aaKnown RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 BMP3P12645 472 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 ZSCAN20P17040 1043 aaPredicted RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 KLC1Q07866 573 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 LAMB3Q13751 1172 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 TMEM35BQ8NCS4 154 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 CMTM5Q96DZ9 223 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 GREM2Q9H772 168 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 CHCHD3Q9NX63 227 aaKnown RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 COX16Q9P0S2 106 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 H0Y626 953 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 KIAA0391O15091 583 aaKnown RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 KDM1AO60341 852 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 TRIM16O95361 564 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 UNC5CLQ8IV45 518 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 ELOA2Q8IYF1 753 aaPredicted RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 XXYLT1Q8NBI6 393 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 HEXIM2Q96MH2 286 aaKnown RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 ADAM22Q9P0K1 906 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 ADGRB3O60242 1522 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 WDR91A4D1P6 747 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 MRPL28Q13084 256 aaKnown RBP8.12□□□□□ -1.11
SF3B3-201ENST00000302516 CNKSR1Q969H4 720 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 SGSM3Q96HU1 749 aa8.12□□□□□ -1.11
SF3B3-201ENST00000302516 COASYQ13057 564 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms