RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeastyeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT3YDR392W YLR326WQ06170 240 aaKnown RBP8.69□□□□□ -1.02
SPT3YDR392W URN1Q06525 465 aaKnown RBP8.69□□□□□ -1.02
SPT3YDR392W UBP1P25037 809 aa8.68□□□□□ -1.02
SPT3YDR392W STH1P32597 1359 aa8.68□□□□□ -1.02
SPT3YDR392W PDR11P40550 1411 aa8.68□□□□□ -1.02
SPT3YDR392W UGA2P38067 497 aa8.67□□□□□ -1.02
SPT3YDR392W VHR2P40041 505 aa8.66□□□□□ -1.02
SPT3YDR392W RPP1BP10622 106 aaKnown RBP8.65□□□□□ -1.02
SPT3YDR392W RAD54P32863 898 aa8.64□□□□□ -1.03
SPT3YDR392W CDC73Q06697 393 aa8.64□□□□□ -1.03
SPT3YDR392W PCS60P38137 543 aaKnown RBP RIP-Chip data8.62□□□□□ -1.03 RIP-Chip
SPT3YDR392W GCN2P15442 1659 aa8.61□□□□□ -1.03
SPT3YDR392W IMH1Q06704 911 aaKnown RBP8.59□□□□□ -1.03
SPT3YDR392W RAM1P22007 431 aa8.57□□□□□ -1.04
SPT3YDR392W KIC1P38692 1080 aa8.57□□□□□ -1.04
SPT3YDR392W MAC1P35192 417 aa8.56□□□□□ -1.04
SPT3YDR392W YPR148CQ06523 435 aa8.54□□□□□ -1.04
SPT3YDR392W YPR015CQ12531 247 aa8.54□□□□□ -1.04
SPT3YDR392W REF2P42073 533 aaPredicted RBP8.53□□□□□ -1.04
SPT3YDR392W YDR090CQ03193 310 aa8.53□□□□□ -1.04
SPT3YDR392W ENT1Q12518 454 aa8.53□□□□□ -1.04
SPT3YDR392W NUM1Q00402 2748 aa8.53□□□□□ -1.04
SPT3YDR392W SDH2P21801 266 aa8.52□□□□□ -1.05
SPT3YDR392W SSA4P22202 642 aaKnown RBP8.52□□□□□ -1.05
SPT3YDR392W GYP1Q08484 637 aa8.52□□□□□ -1.05
SPT3YDR392W PDR5P33302 1511 aaKnown RBP8.52□□□□□ -1.05
SPT3YDR392W SAS4Q04003 481 aa8.5□□□□□ -1.05
SPT3YDR392W PDR1P12383 1068 aa8.49□□□□□ -1.05
SPT3YDR392W PEX21P50091 288 aa8.48□□□□□ -1.05
SPT3YDR392W TOM1Q03280 3268 aa8.47□□□□□ -1.05
SPT3YDR392W SSA2P10592 639 aaKnown RBP8.46□□□□□ -1.06
SPT3YDR392W CSC1Q06538 782 aa8.46□□□□□ -1.06
SPT3YDR392W ALD2P47771 506 aa8.45□□□□□ -1.06
SPT3YDR392W PUS5Q06244 254 aa8.45□□□□□ -1.06
SPT3YDR392W VPS70P47161 811 aa8.44□□□□□ -1.06
SPT3YDR392W TFB4Q12004 338 aa8.44□□□□□ -1.06
SPT3YDR392W MAK21Q12176 1025 aaKnown RBP8.44□□□□□ -1.06
SPT3YDR392W EDE1P34216 1381 aa8.44□□□□□ -1.06
SPT3YDR392W YPR117WQ06116 2489 aa8.44□□□□□ -1.06
SPT3YDR392W GAP1P19145 602 aaPredicted RBP8.43□□□□□ -1.06
SPT3YDR392W YRR1Q12172 810 aa8.43□□□□□ -1.06
SPT3YDR392W RAS1P01119 309 aa8.42□□□□□ -1.06
SPT3YDR392W SRC1Q03707 834 aa8.42□□□□□ -1.06
SPT3YDR392W COX6P00427 148 aa8.41□□□□□ -1.06
SPT3YDR392W DUS1P53759 423 aaKnown RBP8.41□□□□□ -1.06
SPT3YDR392W AMS1P22855 1083 aa8.4□□□□□ -1.06
SPT3YDR392W MRF1P30775 413 aaPredicted RBP8.4□□□□□ -1.06
SPT3YDR392W CAT8P39113 1433 aa8.39□□□□□ -1.07
SPT3YDR392W CTH1P47976 325 aa8.38□□□□□ -1.07
SPT3YDR392W TUM1Q08686 304 aaKnown RBP8.38□□□□□ -1.07
SPT3YDR392W BUD20Q08004 166 aaPredicted RBP8.37□□□□□ -1.07
SPT3YDR392W PRT1P06103 763 aaKnown RBP8.36□□□□□ -1.07
SPT3YDR392W IPL1P38991 367 aa8.36□□□□□ -1.07
SPT3YDR392W YEL077CQ3E7X8 1277 aa8.36□□□□□ -1.07
SPT3YDR392W ORC6P38826 435 aa8.35□□□□□ -1.07
SPT3YDR392W RPN11P43588 306 aaKnown RBP8.34□□□□□ -1.07
SPT3YDR392W NPL4P33755 580 aa8.33□□□□□ -1.08
SPT3YDR392W TOR1P35169 2470 aa8.33□□□□□ -1.08
SPT3YDR392W LEU3P08638 886 aa8.32□□□□□ -1.08
SPT3YDR392W NUD1P32336 851 aa8.32□□□□□ -1.08
SPT3YDR392W CKB1P43639 278 aa8.31□□□□□ -1.08
SPT3YDR392W STR2P47164 639 aa8.31□□□□□ -1.08
SPT3YDR392W ISM1P48526 1002 aa8.31□□□□□ -1.08
SPT3YDR392W MVP1P40959 511 aaKnown RBP8.3□□□□□ -1.08
SPT3YDR392W LYS4P49367 693 aaPredicted RBP8.3□□□□□ -1.08
SPT3YDR392W GEA1P47102 1408 aaPredicted RBP8.29□□□□□ -1.08
SPT3YDR392W TRK1P12685 1235 aa8.28□□□□□ -1.08
SPT3YDR392W RRP5Q05022 1729 aaKnown RBP8.27□□□□□ -1.09
SPT3YDR392W ERG12P07277 443 aa8.27□□□□□ -1.09
SPT3YDR392W RGR1P19263 1082 aa8.26□□□□□ -1.09
SPT3YDR392W GCD11P32481 527 aaKnown RBP8.26□□□□□ -1.09
SPT3YDR392W YPR109WQ06104 294 aa8.26□□□□□ -1.09
SPT3YDR392W POM152P39685 1337 aa8.26□□□□□ -1.09
SPT3YDR392W VPS13Q07878 3144 aa8.25□□□□□ -1.09
SPT3YDR392W PBS2P08018 668 aa8.23□□□□□ -1.09
SPT3YDR392W SPT16P32558 1035 aaKnown RBP8.22□□□□□ -1.09
SPT3YDR392W SEC2P17065 759 aa8.19□□□□□ -1.1
SPT3YDR392W PAT1P25644 796 aaKnown RBP8.19□□□□□ -1.1
SPT3YDR392W TYS1P36421 394 aaKnown RBP8.19□□□□□ -1.1
SPT3YDR392W NPR2P39923 615 aa8.19□□□□□ -1.1
SPT3YDR392W YJL181WP46987 611 aa8.19□□□□□ -1.1
SPT3YDR392W RSF2P46974 1380 aa8.19□□□□□ -1.1
SPT3YDR392W URB1P34241 1764 aaKnown RBP8.17□□□□□ -1.1
SPT3YDR392W TY1A-DR4O74302 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-HP0C2I4 478 aaKnown RBP8.17□□□□□ -1.1
SPT3YDR392W TY1A-AP0CX57 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-PR1P0CX58 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-ORP0CX59 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-PR2P0CX60 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-DR5P0CX65 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-ER2P0CX66 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-GR3P0CX67 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-LR1P0CX68 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-MR2P0CX69 440 aa8.17□□□□□ -1.1
SPT3YDR392W PSE1P32337 1089 aaKnown RBP8.17□□□□□ -1.1
SPT3YDR392W ETP1P38748 585 aaKnown RBP8.17□□□□□ -1.1
SPT3YDR392W TY1A-JR2P47099 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-DR1Q03856 440 aa8.17□□□□□ -1.1
SPT3YDR392W TY1A-ML1Q04706 440 aaKnown RBP8.17□□□□□ -1.1
SPT3YDR392W TY1A-BRQ12217 440 aa8.17□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms