RNA–Protein interactions for RNA: YDR080W

VPS41, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VPS41, Length 2,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS41YDR080W ESS1P22696 170 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-HO13535 1793 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-DR5P0C2I2 1755 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-DR6P0C2I3 1755 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-LR2P0C2I5 1755 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-LR3P0C2I6 1755 aaKnown RBP4.67□□□□□ -1.66
VPS41YDR080W TY1B-PR1P0C2I9 1755 aaKnown RBP4.67□□□□□ -1.66
VPS41YDR080W TY1B-PR2P0C2J0 1756 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-PR3P0C2J1 1755 aaKnown RBP4.67□□□□□ -1.66
VPS41YDR080W TY1B-JR1P47098 1755 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-ML2Q03434 1755 aaKnown RBP4.67□□□□□ -1.66
VPS41YDR080W TY1B-ER1Q03612 1755 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-ML1Q04711 1755 aaKnown RBP4.67□□□□□ -1.66
VPS41YDR080W TY1B-GR2Q12269 1755 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-OLQ12273 1755 aa4.67□□□□□ -1.66
VPS41YDR080W TY1B-PLQ12414 1755 aaKnown RBP4.67□□□□□ -1.66
VPS41YDR080W SLY41P22215 453 aa4.66□□□□□ -1.66
VPS41YDR080W BDP1P46678 594 aa4.66□□□□□ -1.66
VPS41YDR080W TY2B-BQ12491 1770 aa4.65□□□□□ -1.66
VPS41YDR080W GUA1P38625 525 aaKnown RBP4.65□□□□□ -1.67
VPS41YDR080W RPN1P38764 993 aaKnown RBP4.65□□□□□ -1.67
VPS41YDR080W AIR1P40507 360 aaKnown RBP4.65□□□□□ -1.67
VPS41YDR080W SPT16P32558 1035 aaKnown RBP4.64□□□□□ -1.67
VPS41YDR080W MMP1Q12372 583 aa4.64□□□□□ -1.67
VPS41YDR080W MRF1P30775 413 aaPredicted RBP4.64□□□□□ -1.67
VPS41YDR080W TRM1P15565 570 aaKnown RBP4.63□□□□□ -1.67
VPS41YDR080W GLN1P32288 370 aaKnown RBP4.63□□□□□ -1.67
VPS41YDR080W PDC1P06169 563 aaKnown RBP4.63□□□□□ -1.67
VPS41YDR080W YMR196WQ04336 1088 aa4.63□□□□□ -1.67
VPS41YDR080W TY1B-DR3Q99231 1755 aa4.63□□□□□ -1.67
VPS41YDR080W CSN12P47130 423 aa4.62□□□□□ -1.67
VPS41YDR080W TPD3P31383 635 aa4.61□□□□□ -1.67
VPS41YDR080W YDL206WQ12424 762 aa4.61□□□□□ -1.67
VPS41YDR080W ERG12P07277 443 aa4.61□□□□□ -1.67
VPS41YDR080W FRK1Q03002 865 aaPredicted RBP4.61□□□□□ -1.67
VPS41YDR080W TOP2P06786 1428 aaKnown RBP4.61□□□□□ -1.67
VPS41YDR080W DNF2Q12675 1612 aa4.6□□□□□ -1.67
VPS41YDR080W MMS1Q06211 1407 aa4.6□□□□□ -1.67
VPS41YDR080W NTE1Q04958 1679 aa4.6□□□□□ -1.67
VPS41YDR080W HXT10P43581 546 aa4.6□□□□□ -1.67
VPS41YDR080W PUS6P53294 404 aa4.6□□□□□ -1.67
VPS41YDR080W PUS5Q06244 254 aa4.6□□□□□ -1.67
VPS41YDR080W YEL077CQ3E7X8 1277 aa4.6□□□□□ -1.67
VPS41YDR080W YRF1-1P0CX20 1796 aa4.6□□□□□ -1.67
VPS41YDR080W YRF1-5P0CX21 1796 aa4.6□□□□□ -1.67
VPS41YDR080W YRF1-8P0CX22 1796 aa4.6□□□□□ -1.67
VPS41YDR080W RRD1P40454 393 aaKnown RBP4.59□□□□□ -1.67
VPS41YDR080W BUB1P41695 1021 aaKnown RBP RIP-Chip data4.59□□□□□ -1.67not detected
VPS41YDR080W MMS22Q06164 1454 aa4.59□□□□□ -1.67
VPS41YDR080W YPR097WQ06839 1073 aa4.59□□□□□ -1.68
VPS41YDR080W RPA14P50106 137 aa4.58□□□□□ -1.68
VPS41YDR080W PKH3Q03306 898 aaPredicted RBP4.58□□□□□ -1.68
VPS41YDR080W VPS15P22219 1454 aa4.58□□□□□ -1.68
VPS41YDR080W RAD59Q12223 238 aa4.57□□□□□ -1.68
VPS41YDR080W RPO21P04050 1733 aaKnown RBP4.57□□□□□ -1.68
VPS41YDR080W TRM732Q03496 1420 aa4.57□□□□□ -1.68
VPS41YDR080W DRS2P39524 1355 aa4.57□□□□□ -1.68
VPS41YDR080W PAT1P25644 796 aaKnown RBP4.57□□□□□ -1.68
VPS41YDR080W MET32Q12041 191 aa4.56□□□□□ -1.68
VPS41YDR080W YOR093CQ12275 1648 aa4.56□□□□□ -1.68
VPS41YDR080W TY1B-JR2P47100 1755 aaKnown RBP4.55□□□□□ -1.68
VPS41YDR080W TY1B-ER2Q03619 1755 aa4.55□□□□□ -1.68
VPS41YDR080W TY1B-MR1Q04214 1755 aa4.55□□□□□ -1.68
VPS41YDR080W TY1B-MR2Q04670 1755 aaKnown RBP4.55□□□□□ -1.68
VPS41YDR080W TY1B-LR1Q12088 1755 aaKnown RBP4.55□□□□□ -1.68
VPS41YDR080W TY1B-NL1Q12112 1755 aa4.55□□□□□ -1.68
VPS41YDR080W TY1B-GR1Q12141 1755 aa4.55□□□□□ -1.68
VPS41YDR080W TY1B-BLQ12490 1755 aa4.55□□□□□ -1.68
VPS41YDR080W ITT1Q04638 464 aa4.55□□□□□ -1.68
VPS41YDR080W NUP159P40477 1460 aa4.55□□□□□ -1.68
VPS41YDR080W HED1Q03937 162 aa4.55□□□□□ -1.68
VPS41YDR080W PKC1P24583 1151 aa4.54□□□□□ -1.68
VPS41YDR080W SMC4Q12267 1418 aa4.54□□□□□ -1.68
VPS41YDR080W KXD1P53158 218 aa4.53□□□□□ -1.68
VPS41YDR080W YPR084WQ06821 456 aa4.53□□□□□ -1.68
VPS41YDR080W ARG8P18544 423 aa4.53□□□□□ -1.68
VPS41YDR080W ALR1Q08269 859 aa4.53□□□□□ -1.68
VPS41YDR080W TRK1P12685 1235 aa4.53□□□□□ -1.68
VPS41YDR080W HPC2Q01448 625 aa4.53□□□□□ -1.68
VPS41YDR080W SPO14P36126 1683 aa4.52□□□□□ -1.69
VPS41YDR080W POL1P13382 1468 aa4.52□□□□□ -1.69
VPS41YDR080W VAC17P25591 423 aa4.52□□□□□ -1.69
VPS41YDR080W TBF1Q02457 562 aa4.52□□□□□ -1.69
VPS41YDR080W TFB3Q03290 321 aa4.52□□□□□ -1.69
VPS41YDR080W LEO1P38439 464 aa4.52□□□□□ -1.69
VPS41YDR080W NUP170P38181 1502 aa4.51□□□□□ -1.69
VPS41YDR080W SSA2P10592 639 aaKnown RBP4.51□□□□□ -1.69
VPS41YDR080W CDC4P07834 779 aa4.51□□□□□ -1.69
VPS41YDR080W YOR1P53049 1477 aa4.51□□□□□ -1.69
VPS41YDR080W FIG4P42837 879 aa4.5□□□□□ -1.69
VPS41YDR080W MAK16P10962 306 aaPredicted RBP4.5□□□□□ -1.69
VPS41YDR080W SNT2P53127 1403 aa4.5□□□□□ -1.69
VPS41YDR080W VTH1P40438 1549 aa4.49□□□□□ -1.69
VPS41YDR080W VTH2P40890 1549 aa4.49□□□□□ -1.69
VPS41YDR080W DOP1Q03921 1698 aa4.49□□□□□ -1.69
VPS41YDR080W SPP41P38904 1435 aa4.49□□□□□ -1.69
VPS41YDR080W TRM3Q07527 1436 aa4.48□□□□□ -1.69
VPS41YDR080W BIO2P32451 375 aa4.47□□□□□ -1.69
VPS41YDR080W MRT4P33201 236 aaKnown RBP4.47□□□□□ -1.69
VPS41YDR080W SYH1Q02875 849 aaKnown RBP4.47□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms