RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W NAB6Q03735 1134 aaKnown RBP RIP-Chip data17.82■□□□□ 0.44not detected
DEP1YAL013W MAM1P40065 302 aa17.79■□□□□ 0.44
DEP1YAL013W DOT5P40553 215 aa17.79■□□□□ 0.44
DEP1YAL013W ZDS1P50111 915 aaKnown RBP17.77■□□□□ 0.44
DEP1YAL013W GYP7P48365 746 aa17.76■□□□□ 0.43
DEP1YAL013W FOX2Q02207 900 aaKnown RBP17.76■□□□□ 0.43
DEP1YAL013W OSM1P21375 501 aaKnown RBP17.75■□□□□ 0.43
DEP1YAL013W FRK1Q03002 865 aaPredicted RBP17.74■□□□□ 0.43
DEP1YAL013W EDE1P34216 1381 aa17.74■□□□□ 0.43
DEP1YAL013W RIM15P43565 1770 aa17.74■□□□□ 0.43
DEP1YAL013W KCC4P25389 1037 aa17.73■□□□□ 0.43
DEP1YAL013W UGA3P26370 528 aa17.73■□□□□ 0.43
DEP1YAL013W RRT14P40470 206 aa17.72■□□□□ 0.43
DEP1YAL013W LYS2P07702 1392 aa17.71■□□□□ 0.43
DEP1YAL013W FUN12P39730 1002 aaKnown RBP17.69■□□□□ 0.42
DEP1YAL013W COBP00163 385 aa17.68■□□□□ 0.42
DEP1YAL013W BMS1Q08965 1183 aaKnown RBP17.68■□□□□ 0.42
DEP1YAL013W YKR075CP36155 307 aa17.67■□□□□ 0.42
DEP1YAL013W YIL092WP40497 633 aa17.67■□□□□ 0.42
DEP1YAL013W NSE3Q05541 303 aa17.67■□□□□ 0.42
DEP1YAL013W COQ4O13525 335 aa17.66■□□□□ 0.42
DEP1YAL013W YFR016CP43597 1233 aaKnown RBP17.66■□□□□ 0.42
DEP1YAL013W ATG13Q06628 738 aa17.66■□□□□ 0.42
DEP1YAL013W SRT1Q03175 343 aa17.65■□□□□ 0.42
DEP1YAL013W YMR074CQ04773 145 aa17.65■□□□□ 0.42
DEP1YAL013W MAK21Q12176 1025 aaKnown RBP17.64■□□□□ 0.41
DEP1YAL013W GLN1P32288 370 aaKnown RBP17.63■□□□□ 0.41
DEP1YAL013W RAD2P07276 1031 aa17.6■□□□□ 0.41
DEP1YAL013W YBP2P53169 641 aa17.59■□□□□ 0.41
DEP1YAL013W ALE1Q08548 619 aa17.59■□□□□ 0.41
DEP1YAL013W YBR287WP38355 427 aa17.58■□□□□ 0.4
DEP1YAL013W BUD27P43573 796 aaKnown RBP RIP-Chip data17.58■□□□□ 0.4not detected
DEP1YAL013W YOL057WQ08225 711 aa17.58■□□□□ 0.4
DEP1YAL013W DAL5P15365 543 aa17.57■□□□□ 0.4
DEP1YAL013W RPN11P43588 306 aaKnown RBP17.57■□□□□ 0.4
DEP1YAL013W LAM6Q08001 693 aa17.55■□□□□ 0.4
DEP1YAL013W RAD4P14736 754 aa17.54■□□□□ 0.4
DEP1YAL013W RMT2Q03305 412 aa17.54■□□□□ 0.4
DEP1YAL013W TUM1Q08686 304 aaKnown RBP17.54■□□□□ 0.4
DEP1YAL013W GRX1P25373 110 aaKnown RBP17.53■□□□□ 0.4
DEP1YAL013W NPR2P39923 615 aa17.52■□□□□ 0.4
DEP1YAL013W NOP2P40991 618 aaKnown RBP17.51■□□□□ 0.39
DEP1YAL013W YPP1P46951 817 aa17.5■□□□□ 0.39
DEP1YAL013W YDR306CQ06640 478 aa17.5■□□□□ 0.39
DEP1YAL013W PRP40P33203 583 aaKnown RBP17.49■□□□□ 0.39
DEP1YAL013W NOP53Q12080 455 aaKnown RBP17.48■□□□□ 0.39
DEP1YAL013W POL32P47110 350 aa17.46■□□□□ 0.39
DEP1YAL013W ZDS2P54786 942 aa17.46■□□□□ 0.39
DEP1YAL013W BUD31P25337 157 aaPredicted RBP17.45■□□□□ 0.38
DEP1YAL013W UTP10P42945 1769 aaKnown RBP17.44■□□□□ 0.38
DEP1YAL013W RPS19AP07280 144 aaKnown RBP17.44■□□□□ 0.38
DEP1YAL013W RPS19BP07281 144 aaPredicted RBP17.44■□□□□ 0.38
DEP1YAL013W YJL181WP46987 611 aa17.44■□□□□ 0.38
DEP1YAL013W CSI1Q04368 295 aa17.44■□□□□ 0.38
DEP1YAL013W TRP5P00931 707 aaKnown RBP17.43■□□□□ 0.38
DEP1YAL013W YJR008WP47085 338 aa17.43■□□□□ 0.38
DEP1YAL013W SSP2Q08646 371 aa17.43■□□□□ 0.38
DEP1YAL013W MSB4Q12317 492 aa17.43■□□□□ 0.38
DEP1YAL013W MRP7P12687 371 aa17.42■□□□□ 0.38
DEP1YAL013W DNM1P54861 757 aa17.42■□□□□ 0.38
DEP1YAL013W PHM7Q12252 991 aa17.42■□□□□ 0.38
DEP1YAL013W MDG1P53885 366 aa17.41■□□□□ 0.38
DEP1YAL013W FPR3P38911 411 aaKnown RBP17.4■□□□□ 0.38
DEP1YAL013W UBP1P25037 809 aa17.39■□□□□ 0.37
DEP1YAL013W CST6P40535 587 aa17.39■□□□□ 0.37
DEP1YAL013W YGR122WP53272 402 aa17.39■□□□□ 0.37
DEP1YAL013W YPR204WQ08995 1032 aa17.39■□□□□ 0.37
DEP1YAL013W SWI1P09547 1314 aa17.39■□□□□ 0.37
DEP1YAL013W ARG8P18544 423 aa17.38■□□□□ 0.37
DEP1YAL013W RAD24P32641 659 aa17.38■□□□□ 0.37
DEP1YAL013W GRE2Q12068 342 aaKnown RBP17.38■□□□□ 0.37
DEP1YAL013W PUF6Q04373 656 aaKnown RBP17.37■□□□□ 0.37
DEP1YAL013W APL2P36000 726 aaPredicted RBP17.34■□□□□ 0.37
DEP1YAL013W LYS4P49367 693 aaPredicted RBP17.34■□□□□ 0.37
DEP1YAL013W DCD1P06773 312 aa17.33■□□□□ 0.36
DEP1YAL013W ILV3P39522 585 aaKnown RBP17.33■□□□□ 0.36
DEP1YAL013W NYV1Q12255 253 aa17.33■□□□□ 0.36
DEP1YAL013W BOI2P39969 1040 aa17.32■□□□□ 0.36
DEP1YAL013W YLR271WQ06152 274 aa17.32■□□□□ 0.36
DEP1YAL013W NUP133P36161 1157 aa17.31■□□□□ 0.36
DEP1YAL013W YNG2P38806 282 aaKnown RBP17.31■□□□□ 0.36
DEP1YAL013W TEA1P47988 759 aa17.31■□□□□ 0.36
DEP1YAL013W NOP8Q08287 484 aaPredicted RBP17.31■□□□□ 0.36
DEP1YAL013W SET1P38827 1080 aaKnown RBP17.3■□□□□ 0.36
DEP1YAL013W VPS64Q03944 604 aa17.3■□□□□ 0.36
DEP1YAL013W SWC3P31376 625 aa17.29■□□□□ 0.36
DEP1YAL013W CTH1P47976 325 aa17.29■□□□□ 0.36
DEP1YAL013W TFA1P36100 482 aa17.28■□□□□ 0.36
DEP1YAL013W SPO1P53541 631 aa17.27■□□□□ 0.36
DEP1YAL013W GCD7P32502 381 aaPredicted RBP17.26■□□□□ 0.35
DEP1YAL013W BDF1P35817 686 aa17.25■□□□□ 0.35
DEP1YAL013W LPD1P09624 499 aaKnown RBP17.24■□□□□ 0.35
DEP1YAL013W BUG1Q12191 341 aa17.24■□□□□ 0.35
DEP1YAL013W GTT3P39996 337 aa17.23■□□□□ 0.35
DEP1YAL013W HGH1P48362 394 aaKnown RBP17.23■□□□□ 0.35
DEP1YAL013W YGL082WP53155 381 aa17.23■□□□□ 0.35
DEP1YAL013W SER1P33330 395 aaKnown RBP17.22■□□□□ 0.35
DEP1YAL013W UBP12P39538 1254 aa17.22■□□□□ 0.35
DEP1YAL013W UTP22P53254 1237 aaPredicted RBP17.22■□□□□ 0.35
DEP1YAL013W ALD2P47771 506 aa17.18■□□□□ 0.34
Retrieved 100 of 5,963 RNA–protein pairs in 23.8 ms