RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SYNJ1O43426 1573 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.43□□□□□ -1.38
SCN1A-218ENST00000640036 TOP2AP11388 1531 aaKnown RBP6.43□□□□□ -1.38
SCN1A-218ENST00000640036 RAPGEF3O95398 923 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 VPS37DQ86XT2 251 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 TEX14Q8IWB6 1497 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 LAMC3Q9Y6N6 1575 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 TRAK1Q9UPV9 953 aa6.43□□□□□ -1.38
SCN1A-218ENST00000640036 POLD1P28340 1107 aa6.42□□□□□ -1.38
SCN1A-218ENST00000640036 CADPS2Q86UW7 1296 aa6.42□□□□□ -1.38
SCN1A-218ENST00000640036 ARHGAP35Q9NRY4 1499 aa6.42□□□□□ -1.38
SCN1A-218ENST00000640036 MS4A1P11836 297 aa6.42□□□□□ -1.38
SCN1A-218ENST00000640036 TRIM44Q96DX7 344 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-218ENST00000640036 ANP32EQ9BTT0 268 aa6.42□□□□□ -1.38
SCN1A-218ENST00000640036 CD109Q6YHK3 1445 aa6.41□□□□□ -1.38
SCN1A-218ENST00000640036 NESP48681 1621 aa6.41□□□□□ -1.38
SCN1A-218ENST00000640036 ABTB2Q8N961 1025 aa6.41□□□□□ -1.38
SCN1A-218ENST00000640036 FGD5Q6ZNL6 1462 aa6.41□□□□□ -1.38
SCN1A-218ENST00000640036 ARHGAP5Q13017 1502 aa6.41□□□□□ -1.38
SCN1A-218ENST00000640036 NAP1L2Q9ULW6 460 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-218ENST00000640036 EVC2Q86UK5 1308 aa6.41□□□□□ -1.38
SCN1A-218ENST00000640036 MSH6P52701 1360 aa6.41□□□□□ -1.38
SCN1A-218ENST00000640036 ZRSR1Q15695 479 aaKnown RBP6.4□□□□□ -1.38
SCN1A-218ENST00000640036 WIZO95785 1651 aa6.4□□□□□ -1.38
SCN1A-218ENST00000640036 LMOD3Q0VAK6 560 aa6.4□□□□□ -1.38
SCN1A-218ENST00000640036 TCEAL9Q9UHQ7 104 aa6.4□□□□□ -1.39
SCN1A-218ENST00000640036 LRPPRCP42704 1394 aaKnown RBP6.4□□□□□ -1.39
SCN1A-218ENST00000640036 DISP3Q9P2K9 1392 aa6.4□□□□□ -1.39
SCN1A-218ENST00000640036 NLRP13Q86W25 1043 aa6.4□□□□□ -1.39
SCN1A-218ENST00000640036 TAOK2Q9UL54 1235 aa6.4□□□□□ -1.39
SCN1A-218ENST00000640036 DHX57Q6P158 1386 aaKnown RBP6.4□□□□□ -1.39
SCN1A-218ENST00000640036 AKNAQ7Z591 1439 aa6.39□□□□□ -1.39
SCN1A-218ENST00000640036 SLC52A1Q9NWF4 448 aa6.39□□□□□ -1.39
SCN1A-218ENST00000640036 MINK1Q8N4C8 1332 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-218ENST00000640036 NLRP6P59044 892 aa6.39□□□□□ -1.39
SCN1A-218ENST00000640036 NEXNQ0ZGT2 675 aa6.39□□□□□ -1.39
SCN1A-218ENST00000640036 MRS2Q9HD23 443 aa6.39□□□□□ -1.39
SCN1A-218ENST00000640036 L1TD1Q5T7N2 865 aaKnown RBP6.39□□□□□ -1.39
SCN1A-218ENST00000640036 SLC26A8Q96RN1 970 aa6.39□□□□□ -1.39
SCN1A-218ENST00000640036 RAD54L2Q9Y4B4 1467 aa6.38□□□□□ -1.39
SCN1A-218ENST00000640036 SNAPC4Q5SXM2 1469 aa6.38□□□□□ -1.39
SCN1A-218ENST00000640036 C8orf37Q96NL8 207 aa6.38□□□□□ -1.39
SCN1A-218ENST00000640036 AFAP1Q8N556 730 aa6.38□□□□□ -1.39
SCN1A-218ENST00000640036 U2AF1L5P0DN76 240 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-218ENST00000640036 NCLP19338 710 aaKnown RBP6.37□□□□□ -1.39
SCN1A-218ENST00000640036 U2AF1Q01081 240 aaKnown RBP eCLIP6.37□□□□□ -1.39
SCN1A-218ENST00000640036 TATP17735 454 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-218ENST00000640036 SETD5Q9C0A6 1442 aa6.37□□□□□ -1.39
SCN1A-218ENST00000640036 SMC4Q9NTJ3 1288 aa6.37□□□□□ -1.39
SCN1A-218ENST00000640036 ANP32AP39687 249 aaKnown RBP6.37□□□□□ -1.39
SCN1A-218ENST00000640036 BAG6P46379 1132 aa6.37□□□□□ -1.39
SCN1A-218ENST00000640036 VPS53Q5VIR6 699 aa6.36□□□□□ -1.39
SCN1A-218ENST00000640036 RBM42Q9BTD8 480 aaKnown RBP6.36□□□□□ -1.39
SCN1A-218ENST00000640036 DDX54Q8TDD1 881 aaKnown RBP6.36□□□□□ -1.39
SCN1A-218ENST00000640036 NGEFQ8N5V2 710 aa6.36□□□□□ -1.39
SCN1A-218ENST00000640036 DDX10Q13206 875 aaKnown RBP6.36□□□□□ -1.39
SCN1A-218ENST00000640036 TTLL12Q14166 644 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-218ENST00000640036 CC2D1BQ5T0F9 858 aaKnown RBP6.36□□□□□ -1.39
SCN1A-218ENST00000640036 ROCK2O75116 1388 aaKnown RBP6.36□□□□□ -1.39
SCN1A-218ENST00000640036 ZRANB1Q9UGI0 708 aa6.36□□□□□ -1.39
SCN1A-218ENST00000640036 GPATCH3Q96I76 525 aa6.36□□□□□ -1.39
SCN1A-218ENST00000640036 DDX58O95786 925 aaKnown RBP6.35□□□□□ -1.39
SCN1A-218ENST00000640036 CLEC11AQ9Y240 323 aa6.35□□□□□ -1.39
SCN1A-218ENST00000640036 RAD21O60216 631 aa6.35□□□□□ -1.39
SCN1A-218ENST00000640036 FHOD3Q2V2M9 1422 aa6.35□□□□□ -1.39
SCN1A-218ENST00000640036 SMG6Q86US8 1419 aaKnown RBP6.35□□□□□ -1.39
SCN1A-218ENST00000640036 CCDC144AA2RUR9 1427 aa6.35□□□□□ -1.39
SCN1A-218ENST00000640036 HSPA2P54652 639 aa6.35□□□□□ -1.39
SCN1A-218ENST00000640036 HRCP23327 699 aa6.35□□□□□ -1.39
SCN1A-218ENST00000640036 HIRIP3Q9BW71 556 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-218ENST00000640036 PLEKHH2Q8IVE3 1493 aa6.35□□□□□ -1.39
SCN1A-218ENST00000640036 NUTM2GQ5VZR2 741 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 PRM3Q9NNZ6 103 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 PLB1Q6P1J6 1458 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 SCAPERQ9BY12 1400 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 KIF6Q6ZMV9 814 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 HNRNPUQ00839 825 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCN1A-218ENST00000640036 LRRFIP1Q32MZ4 808 aaKnown RBP6.34□□□□□ -1.39
SCN1A-218ENST00000640036 GPR162Q16538 588 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 MARCH6O60337 910 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 ZPR1O75312 459 aa6.34□□□□□ -1.39
SCN1A-218ENST00000640036 GRM1Q13255 1194 aa6.34□□□□□ -1.4
SCN1A-218ENST00000640036 STAC3Q96MF2 364 aa6.33□□□□□ -1.4
SCN1A-218ENST00000640036 HSP90AB1P08238 724 aaKnown RBP6.33□□□□□ -1.4
SCN1A-218ENST00000640036 PMFBP1Q8TBY8 1022 aa6.33□□□□□ -1.4
SCN1A-218ENST00000640036 IPO8O15397 1037 aaKnown RBP6.33□□□□□ -1.4
SCN1A-218ENST00000640036 CEBPAP49715 358 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-218ENST00000640036 GNL2Q13823 731 aaKnown RBP6.33□□□□□ -1.4
SCN1A-218ENST00000640036 MIA2Q96PC5 1412 aa6.33□□□□□ -1.4
SCN1A-218ENST00000640036 EXOC5O00471 708 aa6.32□□□□□ -1.4
SCN1A-218ENST00000640036 HMGXB3Q12766 1538 aa6.32□□□□□ -1.4
SCN1A-218ENST00000640036 MAGI1Q96QZ7 1491 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-218ENST00000640036 SPG7Q9UQ90 795 aa6.32□□□□□ -1.4
SCN1A-218ENST00000640036 ZNF652Q9Y2D9 606 aa6.32□□□□□ -1.4
SCN1A-218ENST00000640036 ZNF772Q68DY9 489 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-218ENST00000640036 LRRC59Q96AG4 307 aaKnown RBP6.32□□□□□ -1.4
SCN1A-218ENST00000640036 TMOD2Q9NZR1 351 aa6.32□□□□□ -1.4
SCN1A-218ENST00000640036 TOMM22Q9NS69 142 aa6.31□□□□□ -1.4
SCN1A-218ENST00000640036 PLEKHO1Q53GL0 409 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-218ENST00000640036 SAMD1Q6SPF0 538 aaPredicted RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms