RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TTC37Q6PGP7 1564 aa17.37■□□□□ 0.37
LINC00540-203ENST00000631321 PRAG1Q86YV5 1406 aa17.37■□□□□ 0.37
LINC00540-203ENST00000631321 ST20-MTHFSA0A0A6YYL1 179 aa17.37■□□□□ 0.37
LINC00540-203ENST00000631321 PLXNC1O60486 1568 aa17.37■□□□□ 0.37
LINC00540-203ENST00000631321 PLA2R1Q13018 1463 aa17.36■□□□□ 0.37
LINC00540-203ENST00000631321 PNISRQ8TF01 805 aaKnown RBP17.36■□□□□ 0.37
LINC00540-203ENST00000631321 POLR3GLQ9BT43 218 aa17.36■□□□□ 0.37
LINC00540-203ENST00000631321 KDM2AQ9Y2K7 1162 aa17.36■□□□□ 0.37
LINC00540-203ENST00000631321 CHD1O14646 1710 aa17.36■□□□□ 0.37
LINC00540-203ENST00000631321 ARHGAP5Q13017 1502 aa17.35■□□□□ 0.37
LINC00540-203ENST00000631321 ABCC2Q92887 1545 aa17.35■□□□□ 0.37
LINC00540-203ENST00000631321 CCDC144AA2RUR9 1427 aa17.35■□□□□ 0.37
LINC00540-203ENST00000631321 GPRASP1Q5JY77 1395 aa17.35■□□□□ 0.37
LINC00540-203ENST00000631321 E9PCH4 1651 aa17.35■□□□□ 0.37
LINC00540-203ENST00000631321 RNF123Q5XPI4 1314 aa17.34■□□□□ 0.37
LINC00540-203ENST00000631321 NUDCQ9Y266 331 aa17.33■□□□□ 0.37
LINC00540-203ENST00000631321 TRPM1Q7Z4N2 1603 aa17.33■□□□□ 0.37
LINC00540-203ENST00000631321 BRD4O60885 1362 aaPredicted RBP17.33■□□□□ 0.37
LINC00540-203ENST00000631321 LRPPRCP42704 1394 aaKnown RBP17.33■□□□□ 0.36
LINC00540-203ENST00000631321 IQGAP3Q86VI3 1631 aa17.33■□□□□ 0.36
LINC00540-203ENST00000631321 RALBP1Q15311 655 aa17.32■□□□□ 0.36
LINC00540-203ENST00000631321 ATP10AO60312 1499 aa17.32■□□□□ 0.36
LINC00540-203ENST00000631321 MAGI2Q86UL8 1455 aa17.32■□□□□ 0.36
LINC00540-203ENST00000631321 FANCIQ9NVI1 1328 aa17.31■□□□□ 0.36
LINC00540-203ENST00000631321 LAMC1P11047 1609 aa17.31■□□□□ 0.36
LINC00540-203ENST00000631321 MYBBP1AQ9BQG0 1328 aaKnown RBP17.31■□□□□ 0.36
LINC00540-203ENST00000631321 A2MP01023 1474 aa17.3■□□□□ 0.36
LINC00540-203ENST00000631321 DUOX2Q9NRD8 1548 aa17.3■□□□□ 0.36
LINC00540-203ENST00000631321 TMC1Q8TDI8 760 aa17.3■□□□□ 0.36
LINC00540-203ENST00000631321 MYO5CQ9NQX4 1742 aa17.29■□□□□ 0.36
LINC00540-203ENST00000631321 ERBINQ96RT1 1412 aa17.29■□□□□ 0.36
LINC00540-203ENST00000631321 ERCC6L2Q5T890 1561 aa17.27■□□□□ 0.36
LINC00540-203ENST00000631321 PLCH2O75038 1416 aa17.27■□□□□ 0.36
LINC00540-203ENST00000631321 PRDM15P57071 1507 aaPredicted RBP17.26■□□□□ 0.35
LINC00540-203ENST00000631321 UHRF1BP1LA0JNW5 1464 aa17.26■□□□□ 0.35
LINC00540-203ENST00000631321 PARD3Q8TEW0 1356 aa17.25■□□□□ 0.35
LINC00540-203ENST00000631321 B4GALNT3Q6L9W6 998 aa17.25■□□□□ 0.35
LINC00540-203ENST00000631321 COL17A1Q9UMD9 1497 aaPredicted RBP17.25■□□□□ 0.35
LINC00540-203ENST00000631321 CNGB1Q14028 1251 aaPredicted RBP17.25■□□□□ 0.35
LINC00540-203ENST00000631321 EIF2AK4Q9P2K8 1649 aaKnown RBP17.24■□□□□ 0.35
LINC00540-203ENST00000631321 NBPF1Q3BBV0 1214 aa17.23■□□□□ 0.35
LINC00540-203ENST00000631321 WASHC2CQ9Y4E1 1318 aa17.22■□□□□ 0.35
LINC00540-203ENST00000631321 PER1O15534 1290 aaPredicted RBP17.22■□□□□ 0.35
LINC00540-203ENST00000631321 MSH5O43196 834 aa17.22■□□□□ 0.35
LINC00540-203ENST00000631321 TESK2Q96S53 571 aa17.22■□□□□ 0.35
LINC00540-203ENST00000631321 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.35
LINC00540-203ENST00000631321 ABCC1P33527 1531 aa17.21■□□□□ 0.35
LINC00540-203ENST00000631321 RGL3Q3MIN7 710 aa17.21■□□□□ 0.35
LINC00540-203ENST00000631321 NLRP13Q86W25 1043 aa17.21■□□□□ 0.35
LINC00540-203ENST00000631321 EFCAB2Q5VUJ9 269 aa17.21■□□□□ 0.35
LINC00540-203ENST00000631321 CLASP1Q7Z460 1538 aa17.2■□□□□ 0.34
LINC00540-203ENST00000631321 INSRP06213 1382 aa17.2■□□□□ 0.34
LINC00540-203ENST00000631321 ZCCHC11Q5TAX3 1644 aaKnown RBP17.19■□□□□ 0.34
LINC00540-203ENST00000631321 ARAP3Q8WWN8 1544 aa17.17■□□□□ 0.34
LINC00540-203ENST00000631321 DISP3Q9P2K9 1392 aa17.17■□□□□ 0.34
LINC00540-203ENST00000631321 RNF17Q9BXT8 1623 aaKnown RBP17.17■□□□□ 0.34
LINC00540-203ENST00000631321 RTEL1-TNFRSF6BF6WH68 1400 aa17.17■□□□□ 0.34
LINC00540-203ENST00000631321 TRAPPC8Q9Y2L5 1435 aa17.17■□□□□ 0.34
LINC00540-203ENST00000631321 ZMYM4Q5VZL5 1548 aa17.17■□□□□ 0.34
LINC00540-203ENST00000631321 PDE3BQ13370 1112 aa17.13■□□□□ 0.33
LINC00540-203ENST00000631321 TMF1P82094 1093 aa17.12■□□□□ 0.33
LINC00540-203ENST00000631321 PTPRTO14522 1441 aa17.12■□□□□ 0.33
LINC00540-203ENST00000631321 STAC3Q96MF2 364 aa17.11■□□□□ 0.33
LINC00540-203ENST00000631321 TRPM2O94759 1503 aa17.11■□□□□ 0.33
LINC00540-203ENST00000631321 ZFYVE16Q7Z3T8 1539 aa17.11■□□□□ 0.33
LINC00540-203ENST00000631321 CCDC136Q96JN2 1154 aa17.1■□□□□ 0.33
LINC00540-203ENST00000631321 SPAG9O60271 1321 aaKnown RBP17.1■□□□□ 0.33
LINC00540-203ENST00000631321 MADDQ8WXG6 1647 aa17.1■□□□□ 0.33
LINC00540-203ENST00000631321 PANK3Q9H999 370 aa17.1■□□□□ 0.33
LINC00540-203ENST00000631321 BLMP54132 1417 aaPredicted RBP17.1■□□□□ 0.33
LINC00540-203ENST00000631321 DEPDC5O75140 1603 aa17.08■□□□□ 0.33
LINC00540-203ENST00000631321 RRP1P56182 461 aaKnown RBP17.08■□□□□ 0.33
LINC00540-203ENST00000631321 SCAPERQ9BY12 1400 aa17.08■□□□□ 0.32
LINC00540-203ENST00000631321 SENP3-EIF4A1A0A087X0R7 540 aa17.07■□□□□ 0.32
LINC00540-203ENST00000631321 WDR7Q9Y4E6 1490 aa17.06■□□□□ 0.32
LINC00540-203ENST00000631321 IQGAP1P46940 1657 aa17.06■□□□□ 0.32
LINC00540-203ENST00000631321 RCAN3Q9UKA8 241 aa17.06■□□□□ 0.32
LINC00540-203ENST00000631321 VWDEQ8N2E2 1590 aa17.05■□□□□ 0.32
LINC00540-203ENST00000631321 CC2D1BQ5T0F9 858 aaKnown RBP17.05■□□□□ 0.32
LINC00540-203ENST00000631321 SPHKAPQ2M3C7 1700 aa17.04■□□□□ 0.32
LINC00540-203ENST00000631321 NEURL4Q96JN8 1562 aa17.04■□□□□ 0.32
LINC00540-203ENST00000631321 AFAP1Q8N556 730 aa17.04■□□□□ 0.32
LINC00540-203ENST00000631321 SCAF11Q99590 1463 aaKnown RBP17.03■□□□□ 0.32
LINC00540-203ENST00000631321 TET3O43151 1660 aa17.03■□□□□ 0.32
LINC00540-203ENST00000631321 CEP152O94986 1710 aa17.03■□□□□ 0.32
LINC00540-203ENST00000631321 CLTCL1P53675 1640 aa17.03■□□□□ 0.32
LINC00540-203ENST00000631321 INO80Q9ULG1 1556 aaPredicted RBP17.03■□□□□ 0.32
LINC00540-203ENST00000631321 ABCA9Q8IUA7 1624 aa17.02■□□□□ 0.32
LINC00540-203ENST00000631321 ATP7AQ04656 1500 aa17.01■□□□□ 0.31
LINC00540-203ENST00000631321 CDCA8Q53HL2 280 aa17■□□□□ 0.31
LINC00540-203ENST00000631321 SYNMO15061 1565 aa17■□□□□ 0.31
LINC00540-203ENST00000631321 ERICH6Q7L0X2 663 aa16.99■□□□□ 0.31
LINC00540-203ENST00000631321 KANK1Q14678 1352 aa16.99■□□□□ 0.31
LINC00540-203ENST00000631321 FANCAO15360 1455 aa16.99■□□□□ 0.31
LINC00540-203ENST00000631321 KIAA1210Q9ULL0 1709 aa16.98■□□□□ 0.31
LINC00540-203ENST00000631321 AMER1Q5JTC6 1135 aaPredicted RBP16.98■□□□□ 0.31
LINC00540-203ENST00000631321 EXOC6Q8TAG9 804 aa16.98■□□□□ 0.31
LINC00540-203ENST00000631321 NPC1L1Q9UHC9 1359 aa16.98■□□□□ 0.31
LINC00540-203ENST00000631321 CDCA7LQ96GN5 454 aa16.97■□□□□ 0.31
LINC00540-203ENST00000631321 SALL2Q9Y467 1007 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 167 ms