RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 EFCAB2Q5VUJ9 269 aa12.32□□□□□ -0.44
COL4A6-210ENST00000621266 CCER2I3L3R5 266 aa12.32□□□□□ -0.44
COL4A6-210ENST00000621266 FOXD1Q16676 465 aa12.32□□□□□ -0.44
COL4A6-210ENST00000621266 GPS2Q13227 327 aa12.31□□□□□ -0.44
COL4A6-210ENST00000621266 TEX35Q5T0J7 233 aa12.31□□□□□ -0.44
COL4A6-210ENST00000621266 WASHC2CQ9Y4E1 1318 aa12.31□□□□□ -0.44
COL4A6-210ENST00000621266 ITPRIPQ8IWB1 547 aa12.31□□□□□ -0.44
COL4A6-210ENST00000621266 PKD2Q13563 968 aa12.3□□□□□ -0.44
COL4A6-210ENST00000621266 BCL11BQ9C0K0 894 aaPredicted RBP12.3□□□□□ -0.44
COL4A6-210ENST00000621266 ATAD2BQ9ULI0 1458 aa12.3□□□□□ -0.44
COL4A6-210ENST00000621266 RWDD1Q9H446 243 aaPredicted RBP12.3□□□□□ -0.44
COL4A6-210ENST00000621266 MSH5O43196 834 aa12.3□□□□□ -0.44
COL4A6-210ENST00000621266 JPH4Q96JJ6 628 aa12.3□□□□□ -0.44
COL4A6-210ENST00000621266 CSPP1Q1MSJ5 1256 aa12.3□□□□□ -0.44
COL4A6-210ENST00000621266 DDX49Q9Y6V7 483 aaKnown RBP12.29□□□□□ -0.44
COL4A6-210ENST00000621266 RAPGEF2Q9Y4G8 1499 aa12.29□□□□□ -0.44
COL4A6-210ENST00000621266 FOXD4L6Q3SYB3 417 aaPredicted RBP12.29□□□□□ -0.44
COL4A6-210ENST00000621266 FOXD4L3Q6VB84 417 aaPredicted RBP12.29□□□□□ -0.44
COL4A6-210ENST00000621266 KLHL34Q8N239 644 aa12.29□□□□□ -0.44
COL4A6-210ENST00000621266 FBXO3Q9UK99 471 aa12.28□□□□□ -0.44
COL4A6-210ENST00000621266 FANCD2Q9BXW9 1451 aa12.28□□□□□ -0.44
COL4A6-210ENST00000621266 PRDM2Q13029 1718 aa12.27□□□□□ -0.45
COL4A6-210ENST00000621266 ANKRD30AQ9BXX3 1397 aa12.27□□□□□ -0.45
COL4A6-210ENST00000621266 NOM1Q5C9Z4 860 aaKnown RBP12.26□□□□□ -0.45
COL4A6-210ENST00000621266 FAM43AQ8N2R8 423 aa12.26□□□□□ -0.45
COL4A6-210ENST00000621266 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.26□□□□□ -0.45
COL4A6-210ENST00000621266 PES1O00541 588 aaKnown RBP12.25□□□□□ -0.45
COL4A6-210ENST00000621266 EVA1CP58658 441 aa12.25□□□□□ -0.45
COL4A6-210ENST00000621266 TRIM6-TRIM34B2RNG4 842 aa12.25□□□□□ -0.45
COL4A6-210ENST00000621266 LTV1Q96GA3 475 aaPredicted RBP12.25□□□□□ -0.45
COL4A6-210ENST00000621266 PMFBP1Q8TBY8 1022 aa12.25□□□□□ -0.45
COL4A6-210ENST00000621266 NUP155O75694 1391 aa12.24□□□□□ -0.45
COL4A6-210ENST00000621266 RRP12Q5JTH9 1297 aaKnown RBP12.24□□□□□ -0.45
COL4A6-210ENST00000621266 SPAG9O60271 1321 aaKnown RBP12.24□□□□□ -0.45
COL4A6-210ENST00000621266 NGDNQ8NEJ9 315 aaKnown RBP12.24□□□□□ -0.45
COL4A6-210ENST00000621266 R3HCC1Q9Y3T6 440 aaKnown RBP12.24□□□□□ -0.45
COL4A6-210ENST00000621266 GOLGA6L19H0YKK7 550 aa12.23□□□□□ -0.45
COL4A6-210ENST00000621266 RASSF8Q8NHQ8 419 aa12.23□□□□□ -0.45
COL4A6-210ENST00000621266 MPHOSPH9Q99550 1183 aa12.23□□□□□ -0.45
COL4A6-210ENST00000621266 TMX4Q9H1E5 349 aaPredicted RBP12.23□□□□□ -0.45
COL4A6-210ENST00000621266 SMARCA4P51532 1647 aa12.23□□□□□ -0.45
COL4A6-210ENST00000621266 FHOD3Q2V2M9 1422 aa12.23□□□□□ -0.45
COL4A6-210ENST00000621266 HSPA5P11021 654 aaKnown RBP12.22□□□□□ -0.45
COL4A6-210ENST00000621266 CEP89Q96ST8 783 aa12.22□□□□□ -0.45
COL4A6-210ENST00000621266 HDGFL2Q7Z4V5 671 aaPredicted RBP12.22□□□□□ -0.45
COL4A6-210ENST00000621266 RAB3GAP2Q9H2M9 1393 aa12.22□□□□□ -0.45
COL4A6-210ENST00000621266 IPO8O15397 1037 aaKnown RBP12.22□□□□□ -0.45
COL4A6-210ENST00000621266 MORC1Q86VD1 984 aa12.22□□□□□ -0.45
COL4A6-210ENST00000621266 PDE4AP27815 886 aa12.22□□□□□ -0.45
COL4A6-210ENST00000621266 SKOR2Q2VWA4 1001 aaPredicted RBP12.22□□□□□ -0.45
COL4A6-210ENST00000621266 RSPH4AQ5TD94 716 aa12.22□□□□□ -0.45
COL4A6-210ENST00000621266 CCDC70Q6NSX1 233 aa12.21□□□□□ -0.45
COL4A6-210ENST00000621266 RTF1Q92541 710 aaKnown RBP12.21□□□□□ -0.45
COL4A6-210ENST00000621266 ST18O60284 1047 aa12.21□□□□□ -0.46
COL4A6-210ENST00000621266 CCDC18Q5T9S5 1454 aa12.2□□□□□ -0.46
COL4A6-210ENST00000621266 RBM10P98175 930 aaKnown RBP12.2□□□□□ -0.46
COL4A6-210ENST00000621266 CCDC34Q96HJ3 373 aa12.2□□□□□ -0.46
COL4A6-210ENST00000621266 MAP7D2Q96T17 732 aa12.2□□□□□ -0.46
COL4A6-210ENST00000621266 BECN2A8MW95 431 aa12.2□□□□□ -0.46
COL4A6-210ENST00000621266 TPD52L1Q16890 204 aaPredicted RBP12.2□□□□□ -0.46
COL4A6-210ENST00000621266 MAPK8IP2Q13387 824 aaPredicted RBP12.2□□□□□ -0.46
COL4A6-210ENST00000621266 SF3A1Q15459 793 aaKnown RBP12.2□□□□□ -0.46
COL4A6-210ENST00000621266 G3V3G9 751 aa12.2□□□□□ -0.46
COL4A6-210ENST00000621266 DCAF8Q5TAQ9 597 aa12.2□□□□□ -0.46
COL4A6-210ENST00000621266 HOMER1Q86YM7 354 aa12.19□□□□□ -0.46
COL4A6-210ENST00000621266 KIF16BQ96L93 1317 aa12.19□□□□□ -0.46
COL4A6-210ENST00000621266 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.19□□□□□ -0.46
COL4A6-210ENST00000621266 IL27Q8NEV9 243 aa12.19□□□□□ -0.46
COL4A6-210ENST00000621266 TSR1Q2NL82 804 aaKnown RBP12.18□□□□□ -0.46
COL4A6-210ENST00000621266 CLUAP1Q96AJ1 413 aa12.18□□□□□ -0.46
COL4A6-210ENST00000621266 FANCIQ9NVI1 1328 aa12.18□□□□□ -0.46
COL4A6-210ENST00000621266 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.18□□□□□ -0.46
COL4A6-210ENST00000621266 ROCK2O75116 1388 aaKnown RBP12.18□□□□□ -0.46
COL4A6-210ENST00000621266 PLCD4Q9BRC7 762 aa12.17□□□□□ -0.46
COL4A6-210ENST00000621266 PIP4K2BP78356 416 aa12.17□□□□□ -0.46
COL4A6-210ENST00000621266 PTPRGP23470 1445 aa12.17□□□□□ -0.46
COL4A6-210ENST00000621266 KTN1Q86UP2 1357 aaKnown RBP12.16□□□□□ -0.46
COL4A6-210ENST00000621266 RDXP35241 583 aaKnown RBP12.16□□□□□ -0.46
COL4A6-210ENST00000621266 FAM161AQ3B820 660 aa12.16□□□□□ -0.46
COL4A6-210ENST00000621266 BRPF3Q9ULD4 1205 aa12.16□□□□□ -0.46
COL4A6-210ENST00000621266 H0YHG0 523 aa12.16□□□□□ -0.46
COL4A6-210ENST00000621266 CHMP3Q9Y3E7 222 aa12.16□□□□□ -0.46
COL4A6-210ENST00000621266 CCDC66A2RUB6 948 aa12.15□□□□□ -0.46
COL4A6-210ENST00000621266 H3BQV1 296 aa12.15□□□□□ -0.46
COL4A6-210ENST00000621266 HSP90AB3PQ58FF7 597 aa12.15□□□□□ -0.46
COL4A6-210ENST00000621266 IFFO2Q5TF58 517 aa12.15□□□□□ -0.46
COL4A6-210ENST00000621266 WWC1Q8IX03 1113 aa12.15□□□□□ -0.46
COL4A6-210ENST00000621266 IFT57Q9NWB7 429 aa12.15□□□□□ -0.47
COL4A6-210ENST00000621266 CWC15Q9P013 229 aaKnown RBP12.14□□□□□ -0.47
COL4A6-210ENST00000621266 SMC4Q9NTJ3 1288 aa12.14□□□□□ -0.47
COL4A6-210ENST00000621266 RUFY1Q96T51 708 aa12.14□□□□□ -0.47
COL4A6-210ENST00000621266 TPM1P09493 284 aa12.14□□□□□ -0.47
COL4A6-210ENST00000621266 AK7Q96M32 723 aa12.14□□□□□ -0.47
COL4A6-210ENST00000621266 ARGLU1Q9NWB6 273 aaPredicted RBP12.14□□□□□ -0.47
COL4A6-210ENST00000621266 EIF3AQ14152 1382 aaKnown RBP12.14□□□□□ -0.47
COL4A6-210ENST00000621266 AQRO60306 1485 aaKnown RBP eCLIP12.13□□□□□ -0.47
COL4A6-210ENST00000621266 CC2D2AQ9P2K1 1620 aa12.13□□□□□ -0.47
COL4A6-210ENST00000621266 MNS1Q8NEH6 495 aa12.13□□□□□ -0.47
COL4A6-210ENST00000621266 SYTL4Q96C24 671 aaPredicted RBP12.13□□□□□ -0.47
COL4A6-210ENST00000621266 RAD54L2Q9Y4B4 1467 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms