RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 ATP10BO94823 1461 aa17.8■□□□□ 0.44
VRK3-209ENST00000594948 ZNF777Q9ULD5 760 aaPredicted RBP17.8■□□□□ 0.44
VRK3-209ENST00000594948 ZNF326Q5BKZ1 582 aaKnown RBP17.79■□□□□ 0.44
VRK3-209ENST00000594948 CDC42BPBQ9Y5S2 1711 aa17.79■□□□□ 0.44
VRK3-209ENST00000594948 PLEKHD1A6NEE1 506 aa17.79■□□□□ 0.44
VRK3-209ENST00000594948 FAM135AQ9P2D6 1515 aa17.78■□□□□ 0.44
VRK3-209ENST00000594948 CCDC141Q6ZP82 1450 aa17.77■□□□□ 0.43
VRK3-209ENST00000594948 PDE3BQ13370 1112 aa17.77■□□□□ 0.43
VRK3-209ENST00000594948 POLR3GLQ9BT43 218 aa17.77■□□□□ 0.43
VRK3-209ENST00000594948 EIF2AK4Q9P2K8 1649 aaKnown RBP17.77■□□□□ 0.43
VRK3-209ENST00000594948 SAMD9LQ8IVG5 1584 aa17.76■□□□□ 0.43
VRK3-209ENST00000594948 PARD3Q8TEW0 1356 aa17.76■□□□□ 0.43
VRK3-209ENST00000594948 TSPY4P0CV99 314 aa17.76■□□□□ 0.43
VRK3-209ENST00000594948 TSPY10P0CW01 314 aa17.76■□□□□ 0.43
VRK3-209ENST00000594948 CHMP7Q8WUX9 453 aaPredicted RBP17.76■□□□□ 0.43
VRK3-209ENST00000594948 MYO5CQ9NQX4 1742 aa17.76■□□□□ 0.43
VRK3-209ENST00000594948 PRAG1Q86YV5 1406 aa17.75■□□□□ 0.43
VRK3-209ENST00000594948 GPRASP1Q5JY77 1395 aa17.75■□□□□ 0.43
VRK3-209ENST00000594948 ST20-MTHFSA0A0A6YYL1 179 aa17.75■□□□□ 0.43
VRK3-209ENST00000594948 ANP32AP39687 249 aaKnown RBP17.75■□□□□ 0.43
VRK3-209ENST00000594948 JPH4Q96JJ6 628 aa17.75■□□□□ 0.43
VRK3-209ENST00000594948 PRDM15P57071 1507 aaPredicted RBP17.74■□□□□ 0.43
VRK3-209ENST00000594948 IPO9Q96P70 1041 aaKnown RBP17.74■□□□□ 0.43
VRK3-209ENST00000594948 WASHC2CQ9Y4E1 1318 aa17.73■□□□□ 0.43
VRK3-209ENST00000594948 RSPH4AQ5TD94 716 aa17.73■□□□□ 0.43
VRK3-209ENST00000594948 IQGAP3Q86VI3 1631 aa17.73■□□□□ 0.43
VRK3-209ENST00000594948 RRP1P56182 461 aaKnown RBP17.72■□□□□ 0.43
VRK3-209ENST00000594948 NLRP13Q86W25 1043 aa17.72■□□□□ 0.43
VRK3-209ENST00000594948 PLXNC1O60486 1568 aa17.72■□□□□ 0.43
VRK3-209ENST00000594948 COL17A1Q9UMD9 1497 aaPredicted RBP17.72■□□□□ 0.43
VRK3-209ENST00000594948 PLEKHH2Q8IVE3 1493 aa17.7■□□□□ 0.42
VRK3-209ENST00000594948 DCAF11Q8TEB1 546 aa17.69■□□□□ 0.42
VRK3-209ENST00000594948 CCDC144AA2RUR9 1427 aa17.68■□□□□ 0.42
VRK3-209ENST00000594948 RNF17Q9BXT8 1623 aaKnown RBP17.68■□□□□ 0.42
VRK3-209ENST00000594948 TCERG1O14776 1098 aaKnown RBP17.68■□□□□ 0.42
VRK3-209ENST00000594948 DEKP35659 375 aaKnown RBP17.68■□□□□ 0.42
VRK3-209ENST00000594948 BLMP54132 1417 aaPredicted RBP17.68■□□□□ 0.42
VRK3-209ENST00000594948 PAK3O75914 559 aaPredicted RBP17.67■□□□□ 0.42
VRK3-209ENST00000594948 RCAN3Q9UKA8 241 aa17.67■□□□□ 0.42
VRK3-209ENST00000594948 ATP10AO60312 1499 aa17.66■□□□□ 0.42
VRK3-209ENST00000594948 A2MP01023 1474 aa17.66■□□□□ 0.42
VRK3-209ENST00000594948 MS4A1P11836 297 aa17.65■□□□□ 0.42
VRK3-209ENST00000594948 ZBTB47Q9UFB7 747 aaPredicted RBP17.65■□□□□ 0.42
VRK3-209ENST00000594948 KDM2AQ9Y2K7 1162 aa17.65■□□□□ 0.42
VRK3-209ENST00000594948 ERCC6Q03468 1493 aa17.65■□□□□ 0.42
VRK3-209ENST00000594948 MAGI2Q86UL8 1455 aa17.65■□□□□ 0.42
VRK3-209ENST00000594948 PER1O15534 1290 aaPredicted RBP17.64■□□□□ 0.41
VRK3-209ENST00000594948 CNGB1Q14028 1251 aaPredicted RBP17.64■□□□□ 0.41
VRK3-209ENST00000594948 PLA2R1Q13018 1463 aa17.63■□□□□ 0.41
VRK3-209ENST00000594948 HNRNPMP52272 730 aaKnown RBP eCLIP17.62■□□□□ 0.41
VRK3-209ENST00000594948 SYCP2Q9BX26 1530 aa17.61■□□□□ 0.41
VRK3-209ENST00000594948 EXOC6Q8TAG9 804 aa17.61■□□□□ 0.41
VRK3-209ENST00000594948 DUOX2Q9NRD8 1548 aa17.6■□□□□ 0.41
VRK3-209ENST00000594948 ERBINQ96RT1 1412 aa17.6■□□□□ 0.41
VRK3-209ENST00000594948 IQGAP1P46940 1657 aa17.59■□□□□ 0.41
VRK3-209ENST00000594948 TTC37Q6PGP7 1564 aa17.58■□□□□ 0.41
VRK3-209ENST00000594948 ARHGAP5Q13017 1502 aa17.56■□□□□ 0.4
VRK3-209ENST00000594948 TESK2Q96S53 571 aa17.56■□□□□ 0.4
VRK3-209ENST00000594948 CLASP1Q7Z460 1538 aa17.56■□□□□ 0.4
VRK3-209ENST00000594948 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.56■□□□□ 0.4
VRK3-209ENST00000594948 SHROOM2Q13796 1616 aa17.56■□□□□ 0.4
VRK3-209ENST00000594948 FBLN2P98095 1184 aa17.56■□□□□ 0.4
VRK3-209ENST00000594948 RTL5Q5HYW3 569 aaPredicted RBP17.55■□□□□ 0.4
VRK3-209ENST00000594948 DISP3Q9P2K9 1392 aa17.55■□□□□ 0.4
VRK3-209ENST00000594948 BACH2Q9BYV9 841 aa17.54■□□□□ 0.4
VRK3-209ENST00000594948 SPHKAPQ2M3C7 1700 aa17.54■□□□□ 0.4
VRK3-209ENST00000594948 PDE4AP27815 886 aa17.54■□□□□ 0.4
VRK3-209ENST00000594948 NBR1Q14596 966 aa17.54■□□□□ 0.4
VRK3-209ENST00000594948 MADDQ8WXG6 1647 aa17.54■□□□□ 0.4
VRK3-209ENST00000594948 NBPF1Q3BBV0 1214 aa17.53■□□□□ 0.4
VRK3-209ENST00000594948 CEP152O94986 1710 aa17.53■□□□□ 0.4
VRK3-209ENST00000594948 TMF1P82094 1093 aa17.52■□□□□ 0.4
VRK3-209ENST00000594948 SYNMO15061 1565 aa17.52■□□□□ 0.4
VRK3-209ENST00000594948 USP35Q9P2H5 1018 aa17.51■□□□□ 0.39
VRK3-209ENST00000594948 KIAA1210Q9ULL0 1709 aa17.49■□□□□ 0.39
VRK3-209ENST00000594948 SENP3-EIF4A1A0A087X0R7 540 aa17.49■□□□□ 0.39
VRK3-209ENST00000594948 PANK3Q9H999 370 aa17.49■□□□□ 0.39
VRK3-209ENST00000594948 CHD1O14646 1710 aa17.48■□□□□ 0.39
VRK3-209ENST00000594948 WDR7Q9Y4E6 1490 aa17.48■□□□□ 0.39
VRK3-209ENST00000594948 CDCA7LQ96GN5 454 aa17.48■□□□□ 0.39
VRK3-209ENST00000594948 ABCC2Q92887 1545 aa17.48■□□□□ 0.39
VRK3-209ENST00000594948 STAC3Q96MF2 364 aa17.47■□□□□ 0.39
VRK3-209ENST00000594948 TRPM2O94759 1503 aa17.46■□□□□ 0.39
VRK3-209ENST00000594948 MYOM1P52179 1685 aa17.46■□□□□ 0.39
VRK3-209ENST00000594948 NEURL4Q96JN8 1562 aa17.46■□□□□ 0.39
VRK3-209ENST00000594948 SCAPERQ9BY12 1400 aa17.45■□□□□ 0.38
VRK3-209ENST00000594948 RGL3Q3MIN7 710 aa17.45■□□□□ 0.38
VRK3-209ENST00000594948 DDRGK1Q96HY6 314 aa17.45■□□□□ 0.38
VRK3-209ENST00000594948 PPM1GO15355 546 aaPredicted RBP17.44■□□□□ 0.38
VRK3-209ENST00000594948 CC2D1BQ5T0F9 858 aaKnown RBP17.44■□□□□ 0.38
VRK3-209ENST00000594948 ABCC1P33527 1531 aa17.44■□□□□ 0.38
VRK3-209ENST00000594948 PIK3C2GO75747 1445 aa17.44■□□□□ 0.38
VRK3-209ENST00000594948 NPC1L1Q9UHC9 1359 aa17.44■□□□□ 0.38
VRK3-209ENST00000594948 DEPDC5O75140 1603 aa17.44■□□□□ 0.38
VRK3-209ENST00000594948 CRBNQ96SW2 442 aa17.43■□□□□ 0.38
VRK3-209ENST00000594948 SALL2Q9Y467 1007 aaPredicted RBP17.43■□□□□ 0.38
VRK3-209ENST00000594948 ASXL1Q8IXJ9 1541 aa17.42■□□□□ 0.38
VRK3-209ENST00000594948 KDM5AP29375 1690 aaKnown RBP17.42■□□□□ 0.38
VRK3-209ENST00000594948 CDCA8Q53HL2 280 aa17.42■□□□□ 0.38
VRK3-209ENST00000594948 KDM2BQ8NHM5 1336 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms