RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 PTPRGP23470 1445 aa25.7■■□□□ 1.71
SCARF1-206ENST00000573852 BRD4O60885 1362 aaPredicted RBP25.68■■□□□ 1.7
SCARF1-206ENST00000573852 MYBBP1AQ9BQG0 1328 aaKnown RBP25.68■■□□□ 1.7
SCARF1-206ENST00000573852 E9PCH4 1651 aa25.67■■□□□ 1.7
SCARF1-206ENST00000573852 RALBP1Q15311 655 aa25.66■■□□□ 1.7
SCARF1-206ENST00000573852 ERCC6Q03468 1493 aa25.65■■□□□ 1.7
SCARF1-206ENST00000573852 KTN1Q86UP2 1357 aaKnown RBP25.64■■□□□ 1.7
SCARF1-206ENST00000573852 ARHGEF5Q12774 1597 aa25.63■■□□□ 1.69
SCARF1-206ENST00000573852 NOP58Q9Y2X3 529 aaKnown RBP25.61■■□□□ 1.69
SCARF1-206ENST00000573852 FAM135AQ9P2D6 1515 aa25.59■■□□□ 1.69
SCARF1-206ENST00000573852 PAK3O75914 559 aaPredicted RBP25.59■■□□□ 1.69
SCARF1-206ENST00000573852 PRAG1Q86YV5 1406 aa25.56■■□□□ 1.68
SCARF1-206ENST00000573852 TRPM1Q7Z4N2 1603 aa25.56■■□□□ 1.68
SCARF1-206ENST00000573852 SAMD9LQ8IVG5 1584 aa25.56■■□□□ 1.68
SCARF1-206ENST00000573852 CCDC141Q6ZP82 1450 aa25.55■■□□□ 1.68
SCARF1-206ENST00000573852 RRP1P56182 461 aaKnown RBP25.54■■□□□ 1.68
SCARF1-206ENST00000573852 CDC42BPBQ9Y5S2 1711 aa25.54■■□□□ 1.68
SCARF1-206ENST00000573852 NBPF1Q3BBV0 1214 aa25.54■■□□□ 1.68
SCARF1-206ENST00000573852 PARD3Q8TEW0 1356 aa25.54■■□□□ 1.68
SCARF1-206ENST00000573852 NLRP13Q86W25 1043 aa25.53■■□□□ 1.68
SCARF1-206ENST00000573852 SALL2Q9Y467 1007 aaPredicted RBP25.53■■□□□ 1.68
SCARF1-206ENST00000573852 CCDC144AA2RUR9 1427 aa25.52■■□□□ 1.68
SCARF1-206ENST00000573852 RGL3Q3MIN7 710 aa25.52■■□□□ 1.68
SCARF1-206ENST00000573852 PER1O15534 1290 aaPredicted RBP25.51■■□□□ 1.67
SCARF1-206ENST00000573852 MYT1LQ9UL68 1186 aa25.5■■□□□ 1.67
SCARF1-206ENST00000573852 EXOC6Q8TAG9 804 aa25.5■■□□□ 1.67
SCARF1-206ENST00000573852 RCAN3Q9UKA8 241 aa25.5■■□□□ 1.67
SCARF1-206ENST00000573852 PREX2Q70Z35 1606 aa25.49■■□□□ 1.67
SCARF1-206ENST00000573852 PLA2R1Q13018 1463 aa25.49■■□□□ 1.67
SCARF1-206ENST00000573852 ANP32AP39687 249 aaKnown RBP25.48■■□□□ 1.67
SCARF1-206ENST00000573852 IPO9Q96P70 1041 aaKnown RBP25.47■■□□□ 1.67
SCARF1-206ENST00000573852 RSPH4AQ5TD94 716 aa25.46■■□□□ 1.67
SCARF1-206ENST00000573852 GPRASP1Q5JY77 1395 aa25.46■■□□□ 1.67
SCARF1-206ENST00000573852 A2MP01023 1474 aa25.45■■□□□ 1.67
SCARF1-206ENST00000573852 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.44■■□□□ 1.66
SCARF1-206ENST00000573852 PDE3BQ13370 1112 aa25.43■■□□□ 1.66
SCARF1-206ENST00000573852 NBR1Q14596 966 aa25.43■■□□□ 1.66
SCARF1-206ENST00000573852 COL17A1Q9UMD9 1497 aaPredicted RBP25.43■■□□□ 1.66
SCARF1-206ENST00000573852 DEKP35659 375 aaKnown RBP25.43■■□□□ 1.66
SCARF1-206ENST00000573852 SYCP2Q9BX26 1530 aa25.43■■□□□ 1.66
SCARF1-206ENST00000573852 DISP3Q9P2K9 1392 aa25.43■■□□□ 1.66
SCARF1-206ENST00000573852 TESK2Q96S53 571 aa25.42■■□□□ 1.66
SCARF1-206ENST00000573852 UNC13BO14795 1591 aa25.42■■□□□ 1.66
SCARF1-206ENST00000573852 CDCA7LQ96GN5 454 aa25.42■■□□□ 1.66
SCARF1-206ENST00000573852 CC2D1BQ5T0F9 858 aaKnown RBP25.41■■□□□ 1.66
SCARF1-206ENST00000573852 PRDM15P57071 1507 aaPredicted RBP25.4■■□□□ 1.66
SCARF1-206ENST00000573852 LAMC1P11047 1609 aa25.39■■□□□ 1.65
SCARF1-206ENST00000573852 MAST1Q9Y2H9 1570 aa25.38■■□□□ 1.65
SCARF1-206ENST00000573852 PANK3Q9H999 370 aa25.37■■□□□ 1.65
SCARF1-206ENST00000573852 ZBTB47Q9UFB7 747 aaPredicted RBP25.37■■□□□ 1.65
SCARF1-206ENST00000573852 WASHC2CQ9Y4E1 1318 aa25.37■■□□□ 1.65
SCARF1-206ENST00000573852 TTC37Q6PGP7 1564 aa25.37■■□□□ 1.65
SCARF1-206ENST00000573852 MYO5CQ9NQX4 1742 aa25.37■■□□□ 1.65
SCARF1-206ENST00000573852 ARHGAP5Q13017 1502 aa25.36■■□□□ 1.65
SCARF1-206ENST00000573852 PLEKHH2Q8IVE3 1493 aa25.35■■□□□ 1.65
SCARF1-206ENST00000573852 ERBINQ96RT1 1412 aa25.35■■□□□ 1.65
SCARF1-206ENST00000573852 IQGAP3Q86VI3 1631 aa25.34■■□□□ 1.65
SCARF1-206ENST00000573852 TCERG1O14776 1098 aaKnown RBP25.34■■□□□ 1.65
SCARF1-206ENST00000573852 BLMP54132 1417 aaPredicted RBP25.33■■□□□ 1.65
SCARF1-206ENST00000573852 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.32■■□□□ 1.64
SCARF1-206ENST00000573852 PLIN1O60240 522 aa25.3■■□□□ 1.64
SCARF1-206ENST00000573852 EIF2AK4Q9P2K8 1649 aaKnown RBP25.3■■□□□ 1.64
SCARF1-206ENST00000573852 INSRP06213 1382 aa25.3■■□□□ 1.64
SCARF1-206ENST00000573852 PLXNC1O60486 1568 aa25.3■■□□□ 1.64
SCARF1-206ENST00000573852 TMF1P82094 1093 aa25.3■■□□□ 1.64
SCARF1-206ENST00000573852 PDE4AP27815 886 aa25.29■■□□□ 1.64
SCARF1-206ENST00000573852 ZMYM4Q5VZL5 1548 aa25.28■■□□□ 1.64
SCARF1-206ENST00000573852 NPM2Q86SE8 214 aaKnown RBP25.27■■□□□ 1.64
SCARF1-206ENST00000573852 ATP10AO60312 1499 aa25.27■■□□□ 1.64
SCARF1-206ENST00000573852 BACH2Q9BYV9 841 aa25.25■■□□□ 1.63
SCARF1-206ENST00000573852 DUOX2Q9NRD8 1548 aa25.24■■□□□ 1.63
SCARF1-206ENST00000573852 MAGI2Q86UL8 1455 aa25.23■■□□□ 1.63
SCARF1-206ENST00000573852 MS4A1P11836 297 aa25.23■■□□□ 1.63
SCARF1-206ENST00000573852 CRBNQ96SW2 442 aa25.22■■□□□ 1.63
SCARF1-206ENST00000573852 RNF17Q9BXT8 1623 aaKnown RBP25.22■■□□□ 1.63
SCARF1-206ENST00000573852 ADAMTS8Q9UP79 889 aa25.21■■□□□ 1.63
SCARF1-206ENST00000573852 WDR7Q9Y4E6 1490 aa25.18■■□□□ 1.62
SCARF1-206ENST00000573852 SKAP1Q86WV1 359 aa25.18■■□□□ 1.62
SCARF1-206ENST00000573852 RTL5Q5HYW3 569 aaPredicted RBP25.16■■□□□ 1.62
SCARF1-206ENST00000573852 CHD1O14646 1710 aa25.16■■□□□ 1.62
SCARF1-206ENST00000573852 C20orf194Q5TEA3 1177 aa25.15■■□□□ 1.62
SCARF1-206ENST00000573852 PPP2R1AP30153 589 aa25.14■■□□□ 1.61
SCARF1-206ENST00000573852 ABCC2Q92887 1545 aa25.13■■□□□ 1.61
SCARF1-206ENST00000573852 KNSTRNQ9Y448 316 aa25.13■■□□□ 1.61
SCARF1-206ENST00000573852 SHROOM2Q13796 1616 aa25.13■■□□□ 1.61
SCARF1-206ENST00000573852 ERCC6L2Q5T890 1561 aa25.13■■□□□ 1.61
SCARF1-206ENST00000573852 MADDQ8WXG6 1647 aa25.12■■□□□ 1.61
SCARF1-206ENST00000573852 PLEKHH1Q9ULM0 1364 aa25.12■■□□□ 1.61
SCARF1-206ENST00000573852 IQGAP1P46940 1657 aa25.11■■□□□ 1.61
SCARF1-206ENST00000573852 AMER1Q5JTC6 1135 aaPredicted RBP25.11■■□□□ 1.61
SCARF1-206ENST00000573852 PLCH2O75038 1416 aa25.1■■□□□ 1.61
SCARF1-206ENST00000573852 WDR43Q15061 677 aaKnown RBP eCLIP25.08■■□□□ 1.61
SCARF1-206ENST00000573852 DUSP27Q5VZP5 1158 aa25.08■■□□□ 1.61
SCARF1-206ENST00000573852 TRAPPC8Q9Y2L5 1435 aa25.08■■□□□ 1.61
SCARF1-206ENST00000573852 EFCAB2Q5VUJ9 269 aa25.07■■□□□ 1.6
SCARF1-206ENST00000573852 LAS1LQ9Y4W2 734 aaKnown RBP25.06■■□□□ 1.6
SCARF1-206ENST00000573852 ZNF521Q96K83 1311 aa25.06■■□□□ 1.6
SCARF1-206ENST00000573852 KDM2BQ8NHM5 1336 aa25.05■■□□□ 1.6
SCARF1-206ENST00000573852 ABCC1P33527 1531 aa25.04■■□□□ 1.6
SCARF1-206ENST00000573852 SPHKAPQ2M3C7 1700 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms