RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ERCC6L2Q5T890 1561 aa11.91□□□□□ -0.5
LINC00558-201ENST00000569422 ADCY10Q96PN6 1610 aa11.9□□□□□ -0.5
LINC00558-201ENST00000569422 CCDC141Q6ZP82 1450 aa11.9□□□□□ -0.5
LINC00558-201ENST00000569422 RSPH4AQ5TD94 716 aa11.89□□□□□ -0.51
LINC00558-201ENST00000569422 ADGBQ8N7X0 1667 aa11.89□□□□□ -0.51
LINC00558-201ENST00000569422 AFAP1Q8N556 730 aa11.89□□□□□ -0.51
LINC00558-201ENST00000569422 CCDC144AA2RUR9 1427 aa11.89□□□□□ -0.51
LINC00558-201ENST00000569422 SYCP2Q9BX26 1530 aa11.89□□□□□ -0.51
LINC00558-201ENST00000569422 B4GALNT3Q6L9W6 998 aa11.88□□□□□ -0.51
LINC00558-201ENST00000569422 DHX29Q7Z478 1369 aaKnown RBP11.87□□□□□ -0.51
LINC00558-201ENST00000569422 RBM19Q9Y4C8 960 aaKnown RBP11.87□□□□□ -0.51
LINC00558-201ENST00000569422 ZBED9Q6R2W3 1325 aa11.87□□□□□ -0.51
LINC00558-201ENST00000569422 EFCAB2Q5VUJ9 269 aa11.87□□□□□ -0.51
LINC00558-201ENST00000569422 PLEKHH2Q8IVE3 1493 aa11.87□□□□□ -0.51
LINC00558-201ENST00000569422 SHANK2Q9UPX8 1470 aa11.87□□□□□ -0.51
LINC00558-201ENST00000569422 SAMD9LQ8IVG5 1584 aa11.87□□□□□ -0.51
LINC00558-201ENST00000569422 CROCC2H7BZ55 1655 aa11.86□□□□□ -0.51
LINC00558-201ENST00000569422 PDIA4P13667 645 aaKnown RBP11.86□□□□□ -0.51
LINC00558-201ENST00000569422 NPM2Q86SE8 214 aaKnown RBP11.86□□□□□ -0.51
LINC00558-201ENST00000569422 CC2D1BQ5T0F9 858 aaKnown RBP11.85□□□□□ -0.51
LINC00558-201ENST00000569422 FAM135AQ9P2D6 1515 aa11.85□□□□□ -0.51
LINC00558-201ENST00000569422 CHD1O14646 1710 aa11.84□□□□□ -0.51
LINC00558-201ENST00000569422 BCORL1Q5H9F3 1711 aa11.84□□□□□ -0.51
LINC00558-201ENST00000569422 TTC37Q6PGP7 1564 aa11.84□□□□□ -0.51
LINC00558-201ENST00000569422 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.83□□□□□ -0.51
LINC00558-201ENST00000569422 TPRNQ4KMQ1 711 aa11.83□□□□□ -0.52
LINC00558-201ENST00000569422 RALGAPBQ86X10 1494 aa11.82□□□□□ -0.52
LINC00558-201ENST00000569422 SPAG9O60271 1321 aaKnown RBP11.82□□□□□ -0.52
LINC00558-201ENST00000569422 PNISRQ8TF01 805 aaKnown RBP11.82□□□□□ -0.52
LINC00558-201ENST00000569422 UHRF1BP1Q6BDS2 1440 aa11.81□□□□□ -0.52
LINC00558-201ENST00000569422 PPP4R2Q9NY27 417 aa11.81□□□□□ -0.52
LINC00558-201ENST00000569422 CDC42BPBQ9Y5S2 1711 aa11.81□□□□□ -0.52
LINC00558-201ENST00000569422 ARHGEF12Q9NZN5 1544 aa11.8□□□□□ -0.52
LINC00558-201ENST00000569422 KDM5CP41229 1560 aa11.8□□□□□ -0.52
LINC00558-201ENST00000569422 TRAPPC8Q9Y2L5 1435 aa11.8□□□□□ -0.52
LINC00558-201ENST00000569422 ARHGEF5Q12774 1597 aa11.8□□□□□ -0.52
LINC00558-201ENST00000569422 ARID4BQ4LE39 1312 aaPredicted RBP11.79□□□□□ -0.52
LINC00558-201ENST00000569422 PLA2R1Q13018 1463 aa11.79□□□□□ -0.52
LINC00558-201ENST00000569422 ABCC2Q92887 1545 aa11.79□□□□□ -0.52
LINC00558-201ENST00000569422 KIF3BO15066 747 aa11.79□□□□□ -0.52
LINC00558-201ENST00000569422 PANK3Q9H999 370 aa11.79□□□□□ -0.52
LINC00558-201ENST00000569422 PREX2Q70Z35 1606 aa11.78□□□□□ -0.52
LINC00558-201ENST00000569422 PRAG1Q86YV5 1406 aa11.78□□□□□ -0.52
LINC00558-201ENST00000569422 NUDCQ9Y266 331 aa11.78□□□□□ -0.52
LINC00558-201ENST00000569422 MYBBP1AQ9BQG0 1328 aaKnown RBP11.78□□□□□ -0.52
LINC00558-201ENST00000569422 PLCH2O75038 1416 aa11.77□□□□□ -0.53
LINC00558-201ENST00000569422 RALBP1Q15311 655 aa11.76□□□□□ -0.53
LINC00558-201ENST00000569422 SENP3Q9H4L4 574 aaPredicted RBP11.76□□□□□ -0.53
LINC00558-201ENST00000569422 KDM5DQ9BY66 1539 aa11.76□□□□□ -0.53
LINC00558-201ENST00000569422 DISP3Q9P2K9 1392 aa11.76□□□□□ -0.53
LINC00558-201ENST00000569422 CHGAP10645 457 aaKnown RBP11.76□□□□□ -0.53
LINC00558-201ENST00000569422 A2MP01023 1474 aa11.76□□□□□ -0.53
LINC00558-201ENST00000569422 TMF1P82094 1093 aa11.75□□□□□ -0.53
LINC00558-201ENST00000569422 KTN1Q86UP2 1357 aaKnown RBP11.75□□□□□ -0.53
LINC00558-201ENST00000569422 TESK2Q96S53 571 aa11.75□□□□□ -0.53
LINC00558-201ENST00000569422 CCDC136Q96JN2 1154 aa11.73□□□□□ -0.53
LINC00558-201ENST00000569422 NLRP13Q86W25 1043 aa11.73□□□□□ -0.53
LINC00558-201ENST00000569422 PKNOX2Q96KN3 472 aa11.73□□□□□ -0.53
LINC00558-201ENST00000569422 SCAPERQ9BY12 1400 aa11.72□□□□□ -0.53
LINC00558-201ENST00000569422 PER1O15534 1290 aaPredicted RBP11.72□□□□□ -0.53
LINC00558-201ENST00000569422 C14orf37Q86TY3 774 aa11.71□□□□□ -0.53
LINC00558-201ENST00000569422 CDCA7LQ96GN5 454 aa11.71□□□□□ -0.53
LINC00558-201ENST00000569422 ANP32EQ9BTT0 268 aa11.71□□□□□ -0.53
LINC00558-201ENST00000569422 DUOX2Q9NRD8 1548 aa11.71□□□□□ -0.54
LINC00558-201ENST00000569422 BRD4O60885 1362 aaPredicted RBP11.7□□□□□ -0.54
LINC00558-201ENST00000569422 SMG6Q86US8 1419 aaKnown RBP11.7□□□□□ -0.54
LINC00558-201ENST00000569422 SHROOM2Q13796 1616 aa11.7□□□□□ -0.54
LINC00558-201ENST00000569422 ERICH6BQ5W0A0 696 aa11.7□□□□□ -0.54
LINC00558-201ENST00000569422 NPM1P06748 294 aaKnown RBP eCLIP11.7□□□□□ -0.54
LINC00558-201ENST00000569422 GGT6Q6P531 493 aa11.7□□□□□ -0.54
LINC00558-201ENST00000569422 ZCCHC11Q5TAX3 1644 aaKnown RBP11.7□□□□□ -0.54
LINC00558-201ENST00000569422 ERBINQ96RT1 1412 aa11.7□□□□□ -0.54
LINC00558-201ENST00000569422 MYO5CQ9NQX4 1742 aa11.69□□□□□ -0.54
LINC00558-201ENST00000569422 PDE4CQ08493 712 aa11.69□□□□□ -0.54
LINC00558-201ENST00000569422 KNSTRNQ9Y448 316 aa11.69□□□□□ -0.54
LINC00558-201ENST00000569422 CFAP70Q5T0N1 1121 aa11.69□□□□□ -0.54
LINC00558-201ENST00000569422 MSH5O43196 834 aa11.67□□□□□ -0.54
LINC00558-201ENST00000569422 POLR1AO95602 1720 aaPredicted RBP11.67□□□□□ -0.54
LINC00558-201ENST00000569422 PLIN1O60240 522 aa11.67□□□□□ -0.54
LINC00558-201ENST00000569422 FANCAO15360 1455 aa11.67□□□□□ -0.54
LINC00558-201ENST00000569422 KANK1Q14678 1352 aa11.67□□□□□ -0.54
LINC00558-201ENST00000569422 NUTM2DQ5VT03 806 aaPredicted RBP11.67□□□□□ -0.54
LINC00558-201ENST00000569422 RCAN3Q9UKA8 241 aa11.66□□□□□ -0.54
LINC00558-201ENST00000569422 GPRASP1Q5JY77 1395 aa11.66□□□□□ -0.54
LINC00558-201ENST00000569422 EXOC6Q8TAG9 804 aa11.65□□□□□ -0.54
LINC00558-201ENST00000569422 PARD3Q8TEW0 1356 aa11.65□□□□□ -0.54
LINC00558-201ENST00000569422 UNC13BO14795 1591 aa11.65□□□□□ -0.54
LINC00558-201ENST00000569422 MAST1Q9Y2H9 1570 aa11.65□□□□□ -0.54
LINC00558-201ENST00000569422 ABCC1P33527 1531 aa11.65□□□□□ -0.54
LINC00558-201ENST00000569422 ADAMTS8Q9UP79 889 aa11.65□□□□□ -0.54
LINC00558-201ENST00000569422 LRPPRCP42704 1394 aaKnown RBP11.65□□□□□ -0.54
LINC00558-201ENST00000569422 TRPM1Q7Z4N2 1603 aa11.65□□□□□ -0.55
LINC00558-201ENST00000569422 ADGRF5Q8IZF2 1346 aa11.64□□□□□ -0.55
LINC00558-201ENST00000569422 CLASP1Q7Z460 1538 aa11.64□□□□□ -0.55
LINC00558-201ENST00000569422 ADGRL1O94910 1474 aa11.64□□□□□ -0.55
LINC00558-201ENST00000569422 COL17A1Q9UMD9 1497 aaPredicted RBP11.64□□□□□ -0.55
LINC00558-201ENST00000569422 WDR43Q15061 677 aaKnown RBP eCLIP11.63□□□□□ -0.55
LINC00558-201ENST00000569422 WDR7Q9Y4E6 1490 aa11.63□□□□□ -0.55
LINC00558-201ENST00000569422 PLXNC1O60486 1568 aa11.63□□□□□ -0.55
LINC00558-201ENST00000569422 IQGAP3Q86VI3 1631 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms