RNA–Protein interactions for RNA: ENST00000564970.1

PTPN9-204, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 5

Gene PTPN9, Length 726 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-204ENST00000564970 BECN1Q14457 450 aa7.98□□□□□ -1.13
PTPN9-204ENST00000564970 FBXO41Q8TF61 875 aa7.98□□□□□ -1.13
PTPN9-204ENST00000564970 MRC2Q9UBG0 1479 aa7.98□□□□□ -1.13
PTPN9-204ENST00000564970 PDS5BQ9NTI5 1447 aa7.97□□□□□ -1.13
PTPN9-204ENST00000564970 ILDR2Q71H61 639 aa7.97□□□□□ -1.13
PTPN9-204ENST00000564970 ZSCAN30Q86W11 494 aa7.97□□□□□ -1.13
PTPN9-204ENST00000564970 GOLGA3Q08378 1498 aa7.97□□□□□ -1.13
PTPN9-204ENST00000564970 XRCC6P12956 609 aaKnown RBP eCLIP7.96□□□□□ -1.14
PTPN9-204ENST00000564970 WWC1Q8IX03 1113 aa7.96□□□□□ -1.14
PTPN9-204ENST00000564970 VPS8Q8N3P4 1428 aa7.95□□□□□ -1.14
PTPN9-204ENST00000564970 RSF1Q96T23 1441 aaPredicted RBP7.95□□□□□ -1.14
PTPN9-204ENST00000564970 PSEN1P49768 467 aa7.95□□□□□ -1.14
PTPN9-204ENST00000564970 CCDC173Q0VFZ6 552 aa7.95□□□□□ -1.14
PTPN9-204ENST00000564970 HNRNPUL2Q1KMD3 747 aaKnown RBP7.95□□□□□ -1.14
PTPN9-204ENST00000564970 ZHX1Q9UKY1 873 aaPredicted RBP7.95□□□□□ -1.14
PTPN9-204ENST00000564970 NUDCQ9Y266 331 aa7.95□□□□□ -1.14
PTPN9-204ENST00000564970 KIF3AQ9Y496 699 aa7.95□□□□□ -1.14
PTPN9-204ENST00000564970 IBTKQ9P2D0 1353 aaPredicted RBP7.95□□□□□ -1.14
PTPN9-204ENST00000564970 ATAD2BQ9ULI0 1458 aa7.94□□□□□ -1.14
PTPN9-204ENST00000564970 HMGXB3Q12766 1538 aa7.94□□□□□ -1.14
PTPN9-204ENST00000564970 FRAT2O75474 233 aaPredicted RBP7.94□□□□□ -1.14
PTPN9-204ENST00000564970 MSNP26038 577 aaKnown RBP7.94□□□□□ -1.14
PTPN9-204ENST00000564970 RIPK4P57078 832 aa7.94□□□□□ -1.14
PTPN9-204ENST00000564970 HMGN5P82970 282 aaKnown RBP7.94□□□□□ -1.14
PTPN9-204ENST00000564970 GABPB1Q06547 395 aaPredicted RBP7.94□□□□□ -1.14
PTPN9-204ENST00000564970 NBPF1Q3BBV0 1214 aa7.94□□□□□ -1.14
PTPN9-204ENST00000564970 PUS7Q96PZ0 661 aaKnown RBP7.94□□□□□ -1.14
PTPN9-204ENST00000564970 RBM28Q9NW13 759 aaKnown RBP7.94□□□□□ -1.14
PTPN9-204ENST00000564970 RRBP1Q9P2E9 1410 aaKnown RBP7.94□□□□□ -1.14
PTPN9-204ENST00000564970 ZNF500O60304 480 aaPredicted RBP7.93□□□□□ -1.14
PTPN9-204ENST00000564970 CALRP27797 417 aaKnown RBP7.93□□□□□ -1.14
PTPN9-204ENST00000564970 HSP90AB3PQ58FF7 597 aa7.93□□□□□ -1.14
PTPN9-204ENST00000564970 DDX11L8A8MPP1 907 aa7.92□□□□□ -1.14
PTPN9-204ENST00000564970 MFAP1P55081 439 aaKnown RBP7.92□□□□□ -1.14
PTPN9-204ENST00000564970 IRX6P78412 446 aaPredicted RBP7.92□□□□□ -1.14
PTPN9-204ENST00000564970 SASS6Q6UVJ0 657 aa7.92□□□□□ -1.14
PTPN9-204ENST00000564970 PPP1R9BQ96SB3 815 aa7.92□□□□□ -1.14
PTPN9-204ENST00000564970 FEZ1Q99689 392 aa7.92□□□□□ -1.14
PTPN9-204ENST00000564970 CALCOCO1Q9P1Z2 691 aa7.92□□□□□ -1.14
PTPN9-204ENST00000564970 ERCC6L2Q5T890 1561 aa7.92□□□□□ -1.14
PTPN9-204ENST00000564970 CFAP65Q6ZU64 1925 aaKnown RBP7.91□□□□□ -1.14
PTPN9-204ENST00000564970 SKOR2Q2VWA4 1001 aaPredicted RBP7.91□□□□□ -1.14
PTPN9-204ENST00000564970 FAM13BQ9NYF5 915 aa7.91□□□□□ -1.14
PTPN9-204ENST00000564970 FHAD1B1AJZ9 1412 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 ZMYM3Q14202 1370 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 RBM25P49756 843 aaKnown RBP7.9□□□□□ -1.14
PTPN9-204ENST00000564970 TPRNQ4KMQ1 711 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.9□□□□□ -1.14
PTPN9-204ENST00000564970 PDCL2Q8N4E4 241 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 PRIMPOLQ96LW4 560 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 TIGD1Q96MW7 591 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 PSMD1Q99460 953 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 GRPEL1Q9HAV7 217 aa7.9□□□□□ -1.14
PTPN9-204ENST00000564970 BAZ1BQ9UIG0 1483 aaKnown RBP7.89□□□□□ -1.15
PTPN9-204ENST00000564970 FAM161AQ3B820 660 aa7.89□□□□□ -1.15
PTPN9-204ENST00000564970 PLCD3Q8N3E9 789 aa7.89□□□□□ -1.15
PTPN9-204ENST00000564970 CARD10Q9BWT7 1032 aa7.89□□□□□ -1.15
PTPN9-204ENST00000564970 BRMS1Q9HCU9 246 aa7.89□□□□□ -1.15
PTPN9-204ENST00000564970 BSDC1Q9NW68 430 aaPredicted RBP7.89□□□□□ -1.15
PTPN9-204ENST00000564970 RAI14Q9P0K7 980 aa7.89□□□□□ -1.15
PTPN9-204ENST00000564970 NCOA2Q15596 1464 aa7.88□□□□□ -1.15
PTPN9-204ENST00000564970 CLIP1P30622 1438 aa7.88□□□□□ -1.15
PTPN9-204ENST00000564970 RAD50Q92878 1312 aa7.88□□□□□ -1.15
PTPN9-204ENST00000564970 UQCRHLA0A096LP55 91 aa7.88□□□□□ -1.15
PTPN9-204ENST00000564970 UQCRHP07919 91 aa7.88□□□□□ -1.15
PTPN9-204ENST00000564970 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.88□□□□□ -1.15
PTPN9-204ENST00000564970 NBPF11Q86T75 865 aa7.88□□□□□ -1.15
PTPN9-204ENST00000564970 TTC36A6NLP5 189 aa7.87□□□□□ -1.15
PTPN9-204ENST00000564970 PATL2C9JE40 543 aaKnown RBP7.87□□□□□ -1.15
PTPN9-204ENST00000564970 TULP2O00295 520 aa7.87□□□□□ -1.15
PTPN9-204ENST00000564970 KIF1CO43896 1103 aaKnown RBP7.87□□□□□ -1.15
PTPN9-204ENST00000564970 GTF2F1P35269 517 aaKnown RBP eCLIP7.87□□□□□ -1.15
PTPN9-204ENST00000564970 SSR1P43307 286 aaKnown RBP7.87□□□□□ -1.15
PTPN9-204ENST00000564970 MNS1Q8NEH6 495 aa7.87□□□□□ -1.15
PTPN9-204ENST00000564970 POGKQ9P215 609 aa7.87□□□□□ -1.15
PTPN9-204ENST00000564970 IRX5P78411 483 aaPredicted RBP7.86□□□□□ -1.15
PTPN9-204ENST00000564970 SATB1Q01826 763 aa7.86□□□□□ -1.15
PTPN9-204ENST00000564970 MYCBPQ99417 103 aaPredicted RBP7.86□□□□□ -1.15
PTPN9-204ENST00000564970 MAPKBP1O60336 1514 aa7.86□□□□□ -1.15
PTPN9-204ENST00000564970 WDR97A6NE52 1622 aa7.85□□□□□ -1.15
PTPN9-204ENST00000564970 KTN1Q86UP2 1357 aaKnown RBP7.85□□□□□ -1.15
PTPN9-204ENST00000564970 PDE3BQ13370 1112 aa7.85□□□□□ -1.15
PTPN9-204ENST00000564970 NOL7Q9UMY1 257 aaKnown RBP7.85□□□□□ -1.15
PTPN9-204ENST00000564970 CNTLNQ9NXG0 1405 aa7.85□□□□□ -1.15
PTPN9-204ENST00000564970 KIF21BO75037 1637 aa7.85□□□□□ -1.15
PTPN9-204ENST00000564970 VGLL3A8MV65 326 aa7.84□□□□□ -1.15
PTPN9-204ENST00000564970 LMOD3Q0VAK6 560 aa7.84□□□□□ -1.15
PTPN9-204ENST00000564970 TMEM132AQ24JP5 1023 aa7.84□□□□□ -1.15
PTPN9-204ENST00000564970 NBPF9Q3BBW0 867 aa7.84□□□□□ -1.15
PTPN9-204ENST00000564970 CC2D2BQ6DHV5 1058 aa7.84□□□□□ -1.15
PTPN9-204ENST00000564970 EGFL6Q8IUX8 553 aa7.84□□□□□ -1.15
PTPN9-204ENST00000564970 KCNG1Q9UIX4 513 aa7.84□□□□□ -1.15
PTPN9-204ENST00000564970 INSRP06213 1382 aa7.84□□□□□ -1.16
PTPN9-204ENST00000564970 ERICH3Q5RHP9 1530 aa7.83□□□□□ -1.16
PTPN9-204ENST00000564970 MCM4P33991 863 aa7.83□□□□□ -1.16
PTPN9-204ENST00000564970 CASC1Q6TDU7 716 aa7.83□□□□□ -1.16
PTPN9-204ENST00000564970 RPAINQ86UA6 219 aa7.83□□□□□ -1.16
PTPN9-204ENST00000564970 MYRIPQ8NFW9 859 aa7.83□□□□□ -1.16
PTPN9-204ENST00000564970 SP7Q8TDD2 431 aaPredicted RBP7.83□□□□□ -1.16
PTPN9-204ENST00000564970 NCAPGQ9BPX3 1015 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms