RNA–Protein interactions for RNA: ENST00000557439.5

XRCC3-218, Transcript of X-ray repair cross complementing 3, humanhuman

TSL 5

Gene XRCC3, Length 2,599 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3-218ENST00000557439 ARHGEF12Q9NZN5 1544 aa24.06■■□□□ 1.44
XRCC3-218ENST00000557439 TTC37Q6PGP7 1564 aa24.06■■□□□ 1.44
XRCC3-218ENST00000557439 PREX2Q70Z35 1606 aa24.06■■□□□ 1.44
XRCC3-218ENST00000557439 ERCC6L2Q5T890 1561 aa24.05■■□□□ 1.44
XRCC3-218ENST00000557439 CHD1O14646 1710 aa24.04■■□□□ 1.44
XRCC3-218ENST00000557439 ARHGAP5Q13017 1502 aa24.04■■□□□ 1.44
XRCC3-218ENST00000557439 ARID4BQ4LE39 1312 aaPredicted RBP24.03■■□□□ 1.44
XRCC3-218ENST00000557439 ERICH6BQ5W0A0 696 aa24.02■■□□□ 1.44
XRCC3-218ENST00000557439 SALL2Q9Y467 1007 aaPredicted RBP24.02■■□□□ 1.44
XRCC3-218ENST00000557439 NUDCQ9Y266 331 aa24.01■■□□□ 1.43
XRCC3-218ENST00000557439 CCDC144AA2RUR9 1427 aa24.01■■□□□ 1.43
XRCC3-218ENST00000557439 SMG6Q86US8 1419 aaKnown RBP24.01■■□□□ 1.43
XRCC3-218ENST00000557439 PLA2R1Q13018 1463 aa23.99■■□□□ 1.43
XRCC3-218ENST00000557439 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.99■■□□□ 1.432e-6■■■■■ 51.7
XRCC3-218ENST00000557439 PLEKHH2Q8IVE3 1493 aa23.99■■□□□ 1.43
XRCC3-218ENST00000557439 PRAG1Q86YV5 1406 aa23.97■■□□□ 1.43
XRCC3-218ENST00000557439 MYBBP1AQ9BQG0 1328 aaKnown RBP23.93■■□□□ 1.42
XRCC3-218ENST00000557439 RSPH4AQ5TD94 716 aa23.93■■□□□ 1.42
XRCC3-218ENST00000557439 A2MP01023 1474 aa23.93■■□□□ 1.42
XRCC3-218ENST00000557439 TRPM1Q7Z4N2 1603 aa23.93■■□□□ 1.42
XRCC3-218ENST00000557439 CC2D1BQ5T0F9 858 aaKnown RBP23.9■■□□□ 1.42
XRCC3-218ENST00000557439 E9PCH4 1651 aa23.89■■□□□ 1.42
XRCC3-218ENST00000557439 DISP3Q9P2K9 1392 aa23.89■■□□□ 1.41
XRCC3-218ENST00000557439 FANCIQ9NVI1 1328 aa23.88■■□□□ 1.41
XRCC3-218ENST00000557439 RALBP1Q15311 655 aa23.88■■□□□ 1.41
XRCC3-218ENST00000557439 LRPPRCP42704 1394 aaKnown RBP23.88■■□□□ 1.41
XRCC3-218ENST00000557439 UNC13BO14795 1591 aa23.87■■□□□ 1.41
XRCC3-218ENST00000557439 BRD4O60885 1362 aaPredicted RBP23.87■■□□□ 1.41
XRCC3-218ENST00000557439 CCDC136Q96JN2 1154 aa23.86■■□□□ 1.41
XRCC3-218ENST00000557439 MYO5CQ9NQX4 1742 aa23.85■■□□□ 1.41
XRCC3-218ENST00000557439 RNF123Q5XPI4 1314 aa23.85■■□□□ 1.41
XRCC3-218ENST00000557439 PER1O15534 1290 aaPredicted RBP23.85■■□□□ 1.41
XRCC3-218ENST00000557439 TESK2Q96S53 571 aa23.85■■□□□ 1.41
XRCC3-218ENST00000557439 ABCC2Q92887 1545 aa23.84■■□□□ 1.41
XRCC3-218ENST00000557439 SHROOM2Q13796 1616 aa23.83■■□□□ 1.41
XRCC3-218ENST00000557439 MAST1Q9Y2H9 1570 aa23.83■■□□□ 1.41
XRCC3-218ENST00000557439 KTN1Q86UP2 1357 aaKnown RBP23.82■■□□□ 1.4
XRCC3-218ENST00000557439 PANK3Q9H999 370 aa23.81■■□□□ 1.4
XRCC3-218ENST00000557439 TRAPPC8Q9Y2L5 1435 aa23.8■■□□□ 1.4
XRCC3-218ENST00000557439 NLRP13Q86W25 1043 aa23.8■■□□□ 1.4
XRCC3-218ENST00000557439 PARD3Q8TEW0 1356 aa23.8■■□□□ 1.4
XRCC3-218ENST00000557439 IQGAP3Q86VI3 1631 aa23.8■■□□□ 1.4
XRCC3-218ENST00000557439 AFAP1Q8N556 730 aa23.79■■□□□ 1.4
XRCC3-218ENST00000557439 CDCA7LQ96GN5 454 aa23.79■■□□□ 1.4
XRCC3-218ENST00000557439 GPRASP1Q5JY77 1395 aa23.78■■□□□ 1.4
XRCC3-218ENST00000557439 PLXNC1O60486 1568 aa23.78■■□□□ 1.4
XRCC3-218ENST00000557439 COL17A1Q9UMD9 1497 aaPredicted RBP23.77■■□□□ 1.4
XRCC3-218ENST00000557439 DUOX2Q9NRD8 1548 aa23.76■■□□□ 1.39
XRCC3-218ENST00000557439 EFCAB2Q5VUJ9 269 aa23.76■■□□□ 1.39
XRCC3-218ENST00000557439 ERICH6Q7L0X2 663 aa23.76■■□□□ 1.39
XRCC3-218ENST00000557439 ERBINQ96RT1 1412 aa23.76■■□□□ 1.39
XRCC3-218ENST00000557439 PRDM15P57071 1507 aaPredicted RBP23.75■■□□□ 1.39
XRCC3-218ENST00000557439 PLCH2O75038 1416 aa23.75■■□□□ 1.39
XRCC3-218ENST00000557439 ZCCHC11Q5TAX3 1644 aaKnown RBP23.74■■□□□ 1.39
XRCC3-218ENST00000557439 EXOC6Q8TAG9 804 aa23.73■■□□□ 1.39
XRCC3-218ENST00000557439 RRP1P56182 461 aaKnown RBP23.71■■□□□ 1.39
XRCC3-218ENST00000557439 TMF1P82094 1093 aa23.71■■□□□ 1.39
XRCC3-218ENST00000557439 RCAN3Q9UKA8 241 aa23.7■■□□□ 1.38
XRCC3-218ENST00000557439 MAGI2Q86UL8 1455 aa23.69■■□□□ 1.38
XRCC3-218ENST00000557439 SPAG9O60271 1321 aaKnown RBP23.68■■□□□ 1.38
XRCC3-218ENST00000557439 ABCC1P33527 1531 aa23.68■■□□□ 1.38
XRCC3-218ENST00000557439 PLIN1O60240 522 aa23.67■■□□□ 1.38
XRCC3-218ENST00000557439 MYT1LQ9UL68 1186 aa23.65■■□□□ 1.38
XRCC3-218ENST00000557439 ATP10AO60312 1499 aa23.64■■□□□ 1.38
XRCC3-218ENST00000557439 EIF2AK4Q9P2K8 1649 aaKnown RBP23.64■■□□□ 1.37
XRCC3-218ENST00000557439 LAMC1P11047 1609 aa23.63■■□□□ 1.37
XRCC3-218ENST00000557439 PAK3O75914 559 aaPredicted RBP23.61■■□□□ 1.37
XRCC3-218ENST00000557439 ADAMTS8Q9UP79 889 aa23.6■■□□□ 1.37
XRCC3-218ENST00000557439 RNF17Q9BXT8 1623 aaKnown RBP23.59■■□□□ 1.37
XRCC3-218ENST00000557439 MADDQ8WXG6 1647 aa23.58■■□□□ 1.37
XRCC3-218ENST00000557439 WDR7Q9Y4E6 1490 aa23.57■■□□□ 1.36
XRCC3-218ENST00000557439 KIF3BO15066 747 aa23.57■■□□□ 1.36
XRCC3-218ENST00000557439 SKAP1Q86WV1 359 aa23.57■■□□□ 1.36
XRCC3-218ENST00000557439 CLASP1Q7Z460 1538 aa23.57■■□□□ 1.36
XRCC3-218ENST00000557439 ZFYVE16Q7Z3T8 1539 aa23.56■■□□□ 1.36
XRCC3-218ENST00000557439 KNSTRNQ9Y448 316 aa23.55■■□□□ 1.36
XRCC3-218ENST00000557439 WASHC2CQ9Y4E1 1318 aa23.55■■□□□ 1.36
XRCC3-218ENST00000557439 CLTCL1P53675 1640 aa23.55■■□□□ 1.36
XRCC3-218ENST00000557439 PDE3BQ13370 1112 aa23.54■■□□□ 1.36
XRCC3-218ENST00000557439 BLMP54132 1417 aaPredicted RBP23.54■■□□□ 1.36
XRCC3-218ENST00000557439 PPP2R1AP30153 589 aa23.53■■□□□ 1.36
XRCC3-218ENST00000557439 UHRF1BP1LA0JNW5 1464 aa23.53■■□□□ 1.36
XRCC3-218ENST00000557439 UGGT1Q9NYU2 1555 aa23.52■■□□□ 1.36
XRCC3-218ENST00000557439 NOP58Q9Y2X3 529 aaKnown RBP23.52■■□□□ 1.36
XRCC3-218ENST00000557439 AMER1Q5JTC6 1135 aaPredicted RBP23.51■■□□□ 1.35
XRCC3-218ENST00000557439 SCAPERQ9BY12 1400 aa23.51■■□□□ 1.35
XRCC3-218ENST00000557439 TRPM2O94759 1503 aa23.51■■□□□ 1.35
XRCC3-218ENST00000557439 SPHKAPQ2M3C7 1700 aa23.51■■□□□ 1.35
XRCC3-218ENST00000557439 IQGAP1P46940 1657 aa23.5■■□□□ 1.35
XRCC3-218ENST00000557439 CFAP70Q5T0N1 1121 aa23.5■■□□□ 1.35
XRCC3-218ENST00000557439 C20orf194Q5TEA3 1177 aa23.5■■□□□ 1.35
XRCC3-218ENST00000557439 CRBNQ96SW2 442 aa23.49■■□□□ 1.35
XRCC3-218ENST00000557439 NPM2Q86SE8 214 aaKnown RBP23.48■■□□□ 1.35
XRCC3-218ENST00000557439 NBR1Q14596 966 aa23.48■■□□□ 1.35
XRCC3-218ENST00000557439 CEP152O94986 1710 aa23.48■■□□□ 1.35
XRCC3-218ENST00000557439 FANCAO15360 1455 aa23.48■■□□□ 1.35
XRCC3-218ENST00000557439 PLEKHH1Q9ULM0 1364 aa23.48■■□□□ 1.35
XRCC3-218ENST00000557439 SCAF11Q99590 1463 aaKnown RBP23.47■■□□□ 1.35
XRCC3-218ENST00000557439 PTPRTO14522 1441 aa23.47■■□□□ 1.35
XRCC3-218ENST00000557439 CCDC146Q8IYE0 955 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms