RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 LCE2CQ5TA81 110 aa6.78□□□□□ -1.32
SLIRP-208ENST00000556956 LAPTM4BQ86VI4 370 aa6.78□□□□□ -1.32
SLIRP-208ENST00000556956 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.78□□□□□ -1.32
SLIRP-208ENST00000556956 HPS5Q9UPZ3 1129 aa6.78□□□□□ -1.32
SLIRP-208ENST00000556956 PPP1R37O75864 691 aa6.77□□□□□ -1.33
SLIRP-208ENST00000556956 NFX1Q12986 1120 aaKnown RBP6.77□□□□□ -1.33
SLIRP-208ENST00000556956 UPF1Q92900 1129 aaKnown RBP eCLIP6.77□□□□□ -1.33
SLIRP-208ENST00000556956 TSR3Q9UJK0 312 aaKnown RBP6.77□□□□□ -1.33
SLIRP-208ENST00000556956 ST8SIA5O15466 376 aa6.76□□□□□ -1.33
SLIRP-208ENST00000556956 DGAT1O75907 488 aa6.76□□□□□ -1.33
SLIRP-208ENST00000556956 OXER1Q8TDS5 423 aa6.76□□□□□ -1.33
SLIRP-208ENST00000556956 COL9A1P20849 921 aa6.75□□□□□ -1.33
SLIRP-208ENST00000556956 ZDHHC16Q969W1 377 aa6.75□□□□□ -1.33
SLIRP-208ENST00000556956 SEPT9Q9UHD8 586 aaPredicted RBP6.75□□□□□ -1.33
SLIRP-208ENST00000556956 STK24Q9Y6E0 443 aa6.75□□□□□ -1.33
SLIRP-208ENST00000556956 PPP1R3GB7ZBB8 358 aa6.73□□□□□ -1.33
SLIRP-208ENST00000556956 JPH4Q96JJ6 628 aa6.73□□□□□ -1.33
SLIRP-208ENST00000556956 KIAA1468Q9P260 1216 aa6.73□□□□□ -1.33
SLIRP-208ENST00000556956 ZNF516Q92618 1163 aa6.72□□□□□ -1.33
SLIRP-208ENST00000556956 GPHNQ9NQX3 736 aaPredicted RBP6.72□□□□□ -1.33
SLIRP-208ENST00000556956 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.72□□□□□ -1.33
SLIRP-208ENST00000556956 MTRQ99707 1265 aa6.71□□□□□ -1.34
SLIRP-208ENST00000556956 AAASQ9NRG9 546 aa6.71□□□□□ -1.34
SLIRP-208ENST00000556956 FAM187AA6NFU0 413 aa6.69□□□□□ -1.34
SLIRP-208ENST00000556956 NKX2-3Q8TAU0 364 aa6.69□□□□□ -1.34
SLIRP-208ENST00000556956 LRCH3Q96II8 777 aa6.69□□□□□ -1.34
SLIRP-208ENST00000556956 EMID1Q96A84 441 aaPredicted RBP6.68□□□□□ -1.34
SLIRP-208ENST00000556956 IL21Q9HBE4 155 aa6.68□□□□□ -1.34
SLIRP-208ENST00000556956 ANO8Q9HCE9 1232 aaPredicted RBP6.68□□□□□ -1.34
SLIRP-208ENST00000556956 DACH1Q9UI36 760 aa6.68□□□□□ -1.34
SLIRP-208ENST00000556956 FAM98CQ17RN3 349 aaKnown RBP6.65□□□□□ -1.34
SLIRP-208ENST00000556956 PRR20EP86478 221 aa6.64□□□□□ -1.35
SLIRP-208ENST00000556956 PRR20CP86479 221 aa6.64□□□□□ -1.35
SLIRP-208ENST00000556956 PRR20DP86480 221 aa6.64□□□□□ -1.35
SLIRP-208ENST00000556956 PRR20BP86481 221 aa6.64□□□□□ -1.35
SLIRP-208ENST00000556956 PRR20AP86496 221 aa6.64□□□□□ -1.35
SLIRP-208ENST00000556956 PPP4CP60510 307 aa6.63□□□□□ -1.35
SLIRP-208ENST00000556956 GMPR2Q9P2T1 348 aaKnown RBP6.63□□□□□ -1.35
SLIRP-208ENST00000556956 C11orf95C9JLR9 678 aaPredicted RBP6.61□□□□□ -1.35
SLIRP-208ENST00000556956 TNFRSF10AO00220 468 aa6.61□□□□□ -1.35
SLIRP-208ENST00000556956 STK25O00506 426 aa6.61□□□□□ -1.35
SLIRP-208ENST00000556956 EVI5O60447 810 aa6.61□□□□□ -1.35
SLIRP-208ENST00000556956 LORP23490 312 aaPredicted RBP6.61□□□□□ -1.35
SLIRP-208ENST00000556956 SLC19A1P41440 591 aa6.61□□□□□ -1.35
SLIRP-208ENST00000556956 FAM181BA6NEQ2 426 aa6.59□□□□□ -1.35
SLIRP-208ENST00000556956 SPRYD7Q5W111 196 aa6.59□□□□□ -1.35
SLIRP-208ENST00000556956 PCDHGA10Q9Y5H3 936 aa6.59□□□□□ -1.35
SLIRP-208ENST00000556956 ONECUT3O60422 494 aaPredicted RBP6.58□□□□□ -1.36
SLIRP-208ENST00000556956 GGCXP38435 758 aa6.58□□□□□ -1.36
SLIRP-208ENST00000556956 ZNF598Q86UK7 904 aaKnown RBP6.58□□□□□ -1.36
SLIRP-208ENST00000556956 KRTAP4-8Q9BYQ9 185 aa6.58□□□□□ -1.36
SLIRP-208ENST00000556956 GDF9O60383 454 aa6.57□□□□□ -1.36
SLIRP-208ENST00000556956 TRIM6-TRIM34B2RNG4 842 aa6.56□□□□□ -1.36
SLIRP-208ENST00000556956 TMUB1Q9BVT8 246 aa6.56□□□□□ -1.36
SLIRP-208ENST00000556956 TERTO14746 1132 aaKnown RBP6.55□□□□□ -1.36
SLIRP-208ENST00000556956 ZNF697Q5TEC3 545 aa6.54□□□□□ -1.36
SLIRP-208ENST00000556956 CRIPAKQ8N1N5 446 aa6.54□□□□□ -1.36
SLIRP-208ENST00000556956 RNF223E7ERA6 249 aa6.53□□□□□ -1.36
SLIRP-208ENST00000556956 XP32Q5T750 250 aa6.53□□□□□ -1.36
SLIRP-208ENST00000556956 SAMD7Q7Z3H4 446 aa6.53□□□□□ -1.36
SLIRP-208ENST00000556956 KCTD17Q8N5Z5 321 aa6.53□□□□□ -1.36
SLIRP-208ENST00000556956 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.52□□□□□ -1.37
SLIRP-208ENST00000556956 APLP1P51693 650 aa6.52□□□□□ -1.37
SLIRP-208ENST00000556956 ZSCAN1Q8NBB4 408 aa6.52□□□□□ -1.37
SLIRP-208ENST00000556956 LIAT1Q6ZQX7 453 aa6.51□□□□□ -1.37
SLIRP-208ENST00000556956 TAOK2Q9UL54 1235 aa6.51□□□□□ -1.37
SLIRP-208ENST00000556956 COPS2P61201 443 aa6.5□□□□□ -1.37
SLIRP-208ENST00000556956 SNRPBP14678 240 aaKnown RBP6.49□□□□□ -1.37
SLIRP-208ENST00000556956 PPP1R15BQ5SWA1 713 aa6.49□□□□□ -1.37
SLIRP-208ENST00000556956 TYW1BQ6NUM6 668 aa6.49□□□□□ -1.37
SLIRP-208ENST00000556956 C6orf132Q5T0Z8 1188 aa6.48□□□□□ -1.37
SLIRP-208ENST00000556956 FBXW7Q969H0 707 aa6.48□□□□□ -1.37
SLIRP-208ENST00000556956 KRTAP9-2Q9BYQ4 174 aa6.48□□□□□ -1.37
SLIRP-208ENST00000556956 AXIN1O15169 862 aa6.47□□□□□ -1.37
SLIRP-208ENST00000556956 KRTAP9-6A0A140TA67 174 aa6.46□□□□□ -1.38
SLIRP-208ENST00000556956 PPEF1O14829 653 aaPredicted RBP6.46□□□□□ -1.38
SLIRP-208ENST00000556956 AVPP01185 164 aa6.46□□□□□ -1.38
SLIRP-208ENST00000556956 GMPRP36959 345 aa6.46□□□□□ -1.38
SLIRP-208ENST00000556956 TSKSQ9UJT2 592 aa6.46□□□□□ -1.38
SLIRP-208ENST00000556956 SMAPO00193 183 aa6.45□□□□□ -1.38
SLIRP-208ENST00000556956 GSK3AP49840 483 aa6.45□□□□□ -1.38
SLIRP-208ENST00000556956 CRISPLD2Q9H0B8 497 aa6.45□□□□□ -1.38
SLIRP-208ENST00000556956 ZPR1O75312 459 aa6.44□□□□□ -1.38
SLIRP-208ENST00000556956 PKD2L1Q9P0L9 805 aa6.44□□□□□ -1.38
SLIRP-208ENST00000556956 PHF14O94880 888 aa6.43□□□□□ -1.38
SLIRP-208ENST00000556956 MAP3K9P80192 1104 aa6.42□□□□□ -1.38
SLIRP-208ENST00000556956 ANKLE1Q8NAG6 615 aa6.42□□□□□ -1.38
SLIRP-208ENST00000556956 C3orf80F5H4A9 247 aa6.41□□□□□ -1.38
SLIRP-208ENST00000556956 RNF40O75150 1001 aa6.41□□□□□ -1.38
SLIRP-208ENST00000556956 KRTAP1-3Q8IUG1 177 aa6.41□□□□□ -1.38
SLIRP-208ENST00000556956 FOXC1Q12948 553 aa6.4□□□□□ -1.38
SLIRP-208ENST00000556956 PACS2Q86VP3 889 aa6.4□□□□□ -1.38
SLIRP-208ENST00000556956 SMCPP49901 116 aaPredicted RBP6.39□□□□□ -1.39
SLIRP-208ENST00000556956 CTC1Q2NKJ3 1217 aa6.39□□□□□ -1.39
SLIRP-208ENST00000556956 TLL1O43897 1013 aa6.38□□□□□ -1.39
SLIRP-208ENST00000556956 KCNMA1Q12791 1236 aa6.38□□□□□ -1.39
SLIRP-208ENST00000556956 PLA2G2CQ5R387 149 aa6.38□□□□□ -1.39
SLIRP-208ENST00000556956 RBM33Q96EV2 1170 aaKnown RBP6.37□□□□□ -1.39
SLIRP-208ENST00000556956 TRIM47Q96LD4 638 aa6.37□□□□□ -1.39
SLIRP-208ENST00000556956 ATP13A2Q9NQ11 1180 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms