RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 TMC1Q8TDI8 760 aa19.8■□□□□ 0.76
ACTN1-211ENST00000553882 ARHGAP5Q13017 1502 aa19.79■□□□□ 0.76
ACTN1-211ENST00000553882 ERICH6BQ5W0A0 696 aa19.79■□□□□ 0.76
ACTN1-211ENST00000553882 CCDC144AA2RUR9 1427 aa19.77■□□□□ 0.76
ACTN1-211ENST00000553882 TTC37Q6PGP7 1564 aa19.77■□□□□ 0.76
ACTN1-211ENST00000553882 CHD1O14646 1710 aa19.77■□□□□ 0.75
ACTN1-211ENST00000553882 RSPH4AQ5TD94 716 aa19.76■□□□□ 0.75
ACTN1-211ENST00000553882 PNISRQ8TF01 805 aaKnown RBP19.76■□□□□ 0.75
ACTN1-211ENST00000553882 NBPF1Q3BBV0 1214 aa19.74■□□□□ 0.75
ACTN1-211ENST00000553882 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.73■□□□□ 0.75
ACTN1-211ENST00000553882 ERCC6L2Q5T890 1561 aa19.73■□□□□ 0.75
ACTN1-211ENST00000553882 NUDCQ9Y266 331 aa19.72■□□□□ 0.75
ACTN1-211ENST00000553882 SMG6Q86US8 1419 aaKnown RBP19.72■□□□□ 0.75
ACTN1-211ENST00000553882 PRAG1Q86YV5 1406 aa19.71■□□□□ 0.75
ACTN1-211ENST00000553882 PLEKHH2Q8IVE3 1493 aa19.7■□□□□ 0.74
ACTN1-211ENST00000553882 PLA2R1Q13018 1463 aa19.7■□□□□ 0.74
ACTN1-211ENST00000553882 MSH5O43196 834 aa19.69■□□□□ 0.74
ACTN1-211ENST00000553882 MYBBP1AQ9BQG0 1328 aaKnown RBP19.68■□□□□ 0.74
ACTN1-211ENST00000553882 A2MP01023 1474 aa19.66■□□□□ 0.74
ACTN1-211ENST00000553882 TRPM1Q7Z4N2 1603 aa19.66■□□□□ 0.74
ACTN1-211ENST00000553882 RALBP1Q15311 655 aa19.65■□□□□ 0.74
ACTN1-211ENST00000553882 SALL2Q9Y467 1007 aaPredicted RBP19.65■□□□□ 0.74
ACTN1-211ENST00000553882 ABCC2Q92887 1545 aa19.65■□□□□ 0.74
ACTN1-211ENST00000553882 UNC13BO14795 1591 aa19.64■□□□□ 0.74
ACTN1-211ENST00000553882 SHROOM2Q13796 1616 aa19.64■□□□□ 0.73
ACTN1-211ENST00000553882 MYO5CQ9NQX4 1742 aa19.64■□□□□ 0.73
ACTN1-211ENST00000553882 BRD4O60885 1362 aaPredicted RBP19.64■□□□□ 0.73
ACTN1-211ENST00000553882 MAST1Q9Y2H9 1570 aa19.63■□□□□ 0.73
ACTN1-211ENST00000553882 LRPPRCP42704 1394 aaKnown RBP19.61■□□□□ 0.73
ACTN1-211ENST00000553882 E9PCH4 1651 aa19.61■□□□□ 0.73
ACTN1-211ENST00000553882 FANCIQ9NVI1 1328 aa19.6■□□□□ 0.73
ACTN1-211ENST00000553882 CC2D1BQ5T0F9 858 aaKnown RBP19.6■□□□□ 0.73
ACTN1-211ENST00000553882 KTN1Q86UP2 1357 aaKnown RBP19.6■□□□□ 0.73
ACTN1-211ENST00000553882 DISP3Q9P2K9 1392 aa19.6■□□□□ 0.73
ACTN1-211ENST00000553882 PLXNC1O60486 1568 aa19.59■□□□□ 0.73
ACTN1-211ENST00000553882 IQGAP3Q86VI3 1631 aa19.59■□□□□ 0.73
ACTN1-211ENST00000553882 NLRP13Q86W25 1043 aa19.58■□□□□ 0.73
ACTN1-211ENST00000553882 CCDC136Q96JN2 1154 aa19.58■□□□□ 0.73
ACTN1-211ENST00000553882 TESK2Q96S53 571 aa19.58■□□□□ 0.73
ACTN1-211ENST00000553882 RNF123Q5XPI4 1314 aa19.58■□□□□ 0.73
ACTN1-211ENST00000553882 PER1O15534 1290 aaPredicted RBP19.58■□□□□ 0.72
ACTN1-211ENST00000553882 EFCAB2Q5VUJ9 269 aa19.58■□□□□ 0.72
ACTN1-211ENST00000553882 DUOX2Q9NRD8 1548 aa19.58■□□□□ 0.72
ACTN1-211ENST00000553882 GPRASP1Q5JY77 1395 aa19.57■□□□□ 0.72
ACTN1-211ENST00000553882 PLCH2O75038 1416 aa19.57■□□□□ 0.72
ACTN1-211ENST00000553882 PARD3Q8TEW0 1356 aa19.56■□□□□ 0.72
ACTN1-211ENST00000553882 TRAPPC8Q9Y2L5 1435 aa19.56■□□□□ 0.72
ACTN1-211ENST00000553882 PANK3Q9H999 370 aa19.55■□□□□ 0.72
ACTN1-211ENST00000553882 COL17A1Q9UMD9 1497 aaPredicted RBP19.55■□□□□ 0.72
ACTN1-211ENST00000553882 AFAP1Q8N556 730 aa19.54■□□□□ 0.72
ACTN1-211ENST00000553882 ERBINQ96RT1 1412 aa19.54■□□□□ 0.72
ACTN1-211ENST00000553882 PRDM15P57071 1507 aaPredicted RBP19.53■□□□□ 0.72
ACTN1-211ENST00000553882 ZCCHC11Q5TAX3 1644 aaKnown RBP19.53■□□□□ 0.72
ACTN1-211ENST00000553882 PRKCSHP14314 528 aaPredicted RBP19.53■□□□□ 0.72
ACTN1-211ENST00000553882 TMF1P82094 1093 aa19.51■□□□□ 0.71
ACTN1-211ENST00000553882 MAGI2Q86UL8 1455 aa19.51■□□□□ 0.71
ACTN1-211ENST00000553882 SPAG9O60271 1321 aaKnown RBP19.5■□□□□ 0.71
ACTN1-211ENST00000553882 ERICH6Q7L0X2 663 aa19.5■□□□□ 0.71
ACTN1-211ENST00000553882 ABCC1P33527 1531 aa19.5■□□□□ 0.71
ACTN1-211ENST00000553882 ATP10AO60312 1499 aa19.49■□□□□ 0.71
ACTN1-211ENST00000553882 EIF2AK4Q9P2K8 1649 aaKnown RBP19.48■□□□□ 0.71
ACTN1-211ENST00000553882 CDCA7LQ96GN5 454 aa19.47■□□□□ 0.71
ACTN1-211ENST00000553882 LAMC1P11047 1609 aa19.46■□□□□ 0.71
ACTN1-211ENST00000553882 RRP1P56182 461 aaKnown RBP19.46■□□□□ 0.71
ACTN1-211ENST00000553882 RCAN3Q9UKA8 241 aa19.46■□□□□ 0.71
ACTN1-211ENST00000553882 MYT1LQ9UL68 1186 aa19.45■□□□□ 0.7
ACTN1-211ENST00000553882 EXOC6Q8TAG9 804 aa19.43■□□□□ 0.7
ACTN1-211ENST00000553882 WASHC2CQ9Y4E1 1318 aa19.42■□□□□ 0.7
ACTN1-211ENST00000553882 CLASP1Q7Z460 1538 aa19.42■□□□□ 0.7
ACTN1-211ENST00000553882 UHRF1BP1LA0JNW5 1464 aa19.41■□□□□ 0.7
ACTN1-211ENST00000553882 ZFYVE16Q7Z3T8 1539 aa19.39■□□□□ 0.7
ACTN1-211ENST00000553882 RNF17Q9BXT8 1623 aaKnown RBP19.39■□□□□ 0.7
ACTN1-211ENST00000553882 PDE3BQ13370 1112 aa19.39■□□□□ 0.69
ACTN1-211ENST00000553882 KIF3BO15066 747 aa19.38■□□□□ 0.69
ACTN1-211ENST00000553882 KNSTRNQ9Y448 316 aa19.38■□□□□ 0.69
ACTN1-211ENST00000553882 MADDQ8WXG6 1647 aa19.38■□□□□ 0.69
ACTN1-211ENST00000553882 PLIN1O60240 522 aa19.37■□□□□ 0.69
ACTN1-211ENST00000553882 WDR7Q9Y4E6 1490 aa19.36■□□□□ 0.69
ACTN1-211ENST00000553882 ADAMTS8Q9UP79 889 aa19.36■□□□□ 0.69
ACTN1-211ENST00000553882 TRPM2O94759 1503 aa19.36■□□□□ 0.69
ACTN1-211ENST00000553882 RTEL1-TNFRSF6BF6WH68 1400 aa19.35■□□□□ 0.69
ACTN1-211ENST00000553882 CLTCL1P53675 1640 aa19.35■□□□□ 0.69
ACTN1-211ENST00000553882 BLMP54132 1417 aaPredicted RBP19.34■□□□□ 0.69
ACTN1-211ENST00000553882 FANCAO15360 1455 aa19.34■□□□□ 0.69
ACTN1-211ENST00000553882 SCAPERQ9BY12 1400 aa19.34■□□□□ 0.69
ACTN1-211ENST00000553882 SPHKAPQ2M3C7 1700 aa19.33■□□□□ 0.69
ACTN1-211ENST00000553882 PTPRTO14522 1441 aa19.32■□□□□ 0.68
ACTN1-211ENST00000553882 PPP2R1AP30153 589 aa19.32■□□□□ 0.68
ACTN1-211ENST00000553882 SCAF11Q99590 1463 aaKnown RBP19.32■□□□□ 0.68
ACTN1-211ENST00000553882 AMER1Q5JTC6 1135 aaPredicted RBP19.32■□□□□ 0.68
ACTN1-211ENST00000553882 IQGAP1P46940 1657 aa19.31■□□□□ 0.68
ACTN1-211ENST00000553882 KANK1Q14678 1352 aa19.31■□□□□ 0.68
ACTN1-211ENST00000553882 ATP7AQ04656 1500 aa19.31■□□□□ 0.68
ACTN1-211ENST00000553882 CEP152O94986 1710 aa19.31■□□□□ 0.68
ACTN1-211ENST00000553882 PAK3O75914 559 aaPredicted RBP19.29■□□□□ 0.68
ACTN1-211ENST00000553882 WDR43Q15061 677 aaKnown RBP eCLIP19.29■□□□□ 0.68
ACTN1-211ENST00000553882 UGGT1Q9NYU2 1555 aa19.29■□□□□ 0.68
ACTN1-211ENST00000553882 CDCA8Q53HL2 280 aa19.29■□□□□ 0.68
ACTN1-211ENST00000553882 CFAP70Q5T0N1 1121 aa19.29■□□□□ 0.68
ACTN1-211ENST00000553882 ARAP3Q8WWN8 1544 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms