RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ANO8Q9HCE9 1232 aaPredicted RBP8.48□□□□□ -1.05
VTI1B-202ENST00000553619 JPH4Q96JJ6 628 aa8.47□□□□□ -1.05
VTI1B-202ENST00000553619 KCNH8Q96L42 1107 aa8.47□□□□□ -1.05
VTI1B-202ENST00000553619 VPS9D1Q9Y2B5 631 aa8.46□□□□□ -1.06
VTI1B-202ENST00000553619 MAP3K9P80192 1104 aa8.45□□□□□ -1.06
VTI1B-202ENST00000553619 HCSTQ9UBK5 93 aa8.45□□□□□ -1.06
VTI1B-202ENST00000553619 KCTD12Q96CX2 325 aaKnown RBP8.44□□□□□ -1.06
VTI1B-202ENST00000553619 ADAM33Q9BZ11 813 aa8.44□□□□□ -1.06
VTI1B-202ENST00000553619 PTPREP23469 700 aa8.43□□□□□ -1.06
VTI1B-202ENST00000553619 ZDHHC16Q969W1 377 aa8.43□□□□□ -1.06
VTI1B-202ENST00000553619 RTN4Q9NQC3 1192 aaKnown RBP8.43□□□□□ -1.06
VTI1B-202ENST00000553619 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.43□□□□□ -1.06
VTI1B-202ENST00000553619 BBXQ8WY36 941 aaPredicted RBP8.41□□□□□ -1.06
VTI1B-202ENST00000553619 STAC3Q96MF2 364 aa8.41□□□□□ -1.06
VTI1B-202ENST00000553619 ZBED2Q9BTP6 218 aa8.41□□□□□ -1.06
VTI1B-202ENST00000553619 SLC4A5Q9BY07 1137 aa8.41□□□□□ -1.06
VTI1B-202ENST00000553619 PLA2G2EQ9NZK7 142 aa8.4□□□□□ -1.06
VTI1B-202ENST00000553619 PCDHGA10Q9Y5H3 936 aa8.4□□□□□ -1.06
VTI1B-202ENST00000553619 CADPSQ9ULU8 1353 aa8.39□□□□□ -1.07
VTI1B-202ENST00000553619 BHMG1C9JSJ3 638 aaPredicted RBP8.38□□□□□ -1.07
VTI1B-202ENST00000553619 CAMK2BQ13554 666 aa8.38□□□□□ -1.07
VTI1B-202ENST00000553619 DPYSL4O14531 572 aa8.37□□□□□ -1.07
VTI1B-202ENST00000553619 CFTRP13569 1480 aa8.37□□□□□ -1.07
VTI1B-202ENST00000553619 PPP1R3GB7ZBB8 358 aa8.35□□□□□ -1.07
VTI1B-202ENST00000553619 COL9A1P20849 921 aa8.35□□□□□ -1.07
VTI1B-202ENST00000553619 TYW1BQ6NUM6 668 aa8.35□□□□□ -1.07
VTI1B-202ENST00000553619 PHF14O94880 888 aa8.34□□□□□ -1.07
VTI1B-202ENST00000553619 PTPN5P54829 565 aa8.34□□□□□ -1.07
VTI1B-202ENST00000553619 PROX2Q3B8N5 592 aa8.34□□□□□ -1.07
VTI1B-202ENST00000553619 LAMC3Q9Y6N6 1575 aa8.34□□□□□ -1.07
VTI1B-202ENST00000553619 THSD4Q6ZMP0 1018 aa8.33□□□□□ -1.08
VTI1B-202ENST00000553619 MRPL50Q8N5N7 158 aaKnown RBP8.33□□□□□ -1.08
VTI1B-202ENST00000553619 SPRYD3Q8NCJ5 442 aa8.33□□□□□ -1.08
VTI1B-202ENST00000553619 PRDM2Q13029 1718 aa8.32□□□□□ -1.08
VTI1B-202ENST00000553619 PDS5BQ9NTI5 1447 aa8.32□□□□□ -1.08
VTI1B-202ENST00000553619 FBXW7Q969H0 707 aa8.32□□□□□ -1.08
VTI1B-202ENST00000553619 GOLGA8CPA6NN73 597 aa8.31□□□□□ -1.08
VTI1B-202ENST00000553619 WNT2BQ93097 391 aa8.31□□□□□ -1.08
VTI1B-202ENST00000553619 NBPF3Q9H094 633 aa8.31□□□□□ -1.08
VTI1B-202ENST00000553619 DDX12PQ92771 950 aa8.3□□□□□ -1.08
VTI1B-202ENST00000553619 CFAP44Q96MT7 982 aa8.29□□□□□ -1.08
VTI1B-202ENST00000553619 EPAS1Q99814 870 aa8.29□□□□□ -1.08
VTI1B-202ENST00000553619 RBM33Q96EV2 1170 aaKnown RBP8.28□□□□□ -1.08
VTI1B-202ENST00000553619 RABGEF1Q9UJ41 708 aa8.28□□□□□ -1.08
VTI1B-202ENST00000553619 C6orf132Q5T0Z8 1188 aa8.27□□□□□ -1.09
VTI1B-202ENST00000553619 PAXIP1Q6ZW49 1069 aaPredicted RBP8.27□□□□□ -1.09
VTI1B-202ENST00000553619 WRNQ14191 1432 aaPredicted RBP eCLIP8.27□□□□□ -1.09
VTI1B-202ENST00000553619 FANCD2Q9BXW9 1451 aa8.26□□□□□ -1.09
VTI1B-202ENST00000553619 NESP48681 1621 aa8.26□□□□□ -1.09
VTI1B-202ENST00000553619 PDIA6Q15084 440 aa8.26□□□□□ -1.09
VTI1B-202ENST00000553619 KIAA1468Q9P260 1216 aa8.25□□□□□ -1.09
VTI1B-202ENST00000553619 ABCC8Q09428 1581 aa8.25□□□□□ -1.09
VTI1B-202ENST00000553619 NBR1Q14596 966 aa8.24□□□□□ -1.09
VTI1B-202ENST00000553619 CEP164Q9UPV0 1460 aa8.24□□□□□ -1.09
VTI1B-202ENST00000553619 BCAMP50895 628 aa8.23□□□□□ -1.09
VTI1B-202ENST00000553619 TSR1Q2NL82 804 aaKnown RBP8.23□□□□□ -1.09
VTI1B-202ENST00000553619 ANKK1Q8NFD2 765 aa8.23□□□□□ -1.09
VTI1B-202ENST00000553619 SEPT9Q9UHD8 586 aaPredicted RBP8.23□□□□□ -1.09
VTI1B-202ENST00000553619 TRIM6-TRIM34B2RNG4 842 aa8.22□□□□□ -1.09
VTI1B-202ENST00000553619 EN1Q05925 392 aaPredicted RBP8.22□□□□□ -1.09
VTI1B-202ENST00000553619 E2F4Q16254 413 aa8.22□□□□□ -1.09
VTI1B-202ENST00000553619 MAP3K7O43318 606 aa8.21□□□□□ -1.1
VTI1B-202ENST00000553619 LAPTM4BQ86VI4 370 aa8.21□□□□□ -1.1
VTI1B-202ENST00000553619 WDR70Q9NW82 654 aa8.21□□□□□ -1.1
VTI1B-202ENST00000553619 ERCC6Q03468 1493 aa8.2□□□□□ -1.1
VTI1B-202ENST00000553619 SPDYE16A6NNV3 312 aaPredicted RBP8.2□□□□□ -1.1
VTI1B-202ENST00000553619 ONECUT3O60422 494 aaPredicted RBP8.2□□□□□ -1.1
VTI1B-202ENST00000553619 PRIM1P49642 420 aaKnown RBP8.2□□□□□ -1.1
VTI1B-202ENST00000553619 ZFRQ96KR1 1074 aaKnown RBP8.2□□□□□ -1.1
VTI1B-202ENST00000553619 TOP2BQ02880 1626 aa8.19□□□□□ -1.1
VTI1B-202ENST00000553619 SOWAHBA6NEL2 793 aa8.19□□□□□ -1.1
VTI1B-202ENST00000553619 KIF21AQ7Z4S6 1674 aa8.18□□□□□ -1.1
VTI1B-202ENST00000553619 IFFO2Q5TF58 517 aa8.18□□□□□ -1.1
VTI1B-202ENST00000553619 TSKSQ9UJT2 592 aa8.18□□□□□ -1.1
VTI1B-202ENST00000553619 ARIH1Q9Y4X5 557 aaPredicted RBP8.18□□□□□ -1.1
VTI1B-202ENST00000553619 BIVM-ERCC5R4GMW8 1640 aa8.18□□□□□ -1.1
VTI1B-202ENST00000553619 DNMBPQ6XZF7 1577 aa8.17□□□□□ -1.1
VTI1B-202ENST00000553619 GRXCR2A6NFK2 248 aa8.16□□□□□ -1.1
VTI1B-202ENST00000553619 CUX1P39880 1505 aa8.16□□□□□ -1.1
VTI1B-202ENST00000553619 FAM98CQ17RN3 349 aaKnown RBP8.16□□□□□ -1.1
VTI1B-202ENST00000553619 MRC2Q9UBG0 1479 aa8.16□□□□□ -1.1
VTI1B-202ENST00000553619 SYNJ1O43426 1573 aa8.15□□□□□ -1.1
VTI1B-202ENST00000553619 TOPBP1Q92547 1522 aa8.15□□□□□ -1.1
VTI1B-202ENST00000553619 EEA1Q15075 1411 aa8.15□□□□□ -1.1
VTI1B-202ENST00000553619 A0A0G2JS52 829 aa8.15□□□□□ -1.1
VTI1B-202ENST00000553619 WBP1LQ9NX94 342 aa8.15□□□□□ -1.1
VTI1B-202ENST00000553619 FAM198AQ9UFP1 575 aa8.14□□□□□ -1.11
VTI1B-202ENST00000553619 ITGBL1O95965 494 aaPredicted RBP8.13□□□□□ -1.11
VTI1B-202ENST00000553619 CDCA7LQ96GN5 454 aa8.13□□□□□ -1.11
VTI1B-202ENST00000553619 CDHR5Q9HBB8 845 aa8.13□□□□□ -1.11
VTI1B-202ENST00000553619 URB2Q14146 1524 aaKnown RBP8.13□□□□□ -1.11
VTI1B-202ENST00000553619 SOGA1O94964 1423 aa8.12□□□□□ -1.11
VTI1B-202ENST00000553619 C3orf80F5H4A9 247 aa8.12□□□□□ -1.11
VTI1B-202ENST00000553619 SMAPO00193 183 aa8.12□□□□□ -1.11
VTI1B-202ENST00000553619 OSBPP22059 807 aa8.12□□□□□ -1.11
VTI1B-202ENST00000553619 PACS2Q86VP3 889 aa8.12□□□□□ -1.11
VTI1B-202ENST00000553619 LRCH3Q96II8 777 aa8.12□□□□□ -1.11
VTI1B-202ENST00000553619 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.12□□□□□ -1.11
VTI1B-202ENST00000553619 FGD5Q6ZNL6 1462 aa8.12□□□□□ -1.11
VTI1B-202ENST00000553619 PRSS12P56730 875 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms