RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CCDC136Q96JN2 1154 aa21.33■■□□□ 1
LDLR-204ENST00000545707 ARHGEF12Q9NZN5 1544 aa21.32■■□□□ 1
LDLR-204ENST00000545707 RNF123Q5XPI4 1314 aa21.31■■□□□ 1
LDLR-204ENST00000545707 MYBBP1AQ9BQG0 1328 aaKnown RBP21.3■■□□□ 1
LDLR-204ENST00000545707 KDM5DQ9BY66 1539 aa21.3■■□□□ 1
LDLR-204ENST00000545707 FAM135AQ9P2D6 1515 aa21.27■■□□□ 1
LDLR-204ENST00000545707 RALBP1Q15311 655 aa21.26■□□□□ 0.99
LDLR-204ENST00000545707 CCDC141Q6ZP82 1450 aa21.26■□□□□ 0.99
LDLR-204ENST00000545707 SAMD9LQ8IVG5 1584 aa21.26■□□□□ 0.99
LDLR-204ENST00000545707 LRPPRCP42704 1394 aaKnown RBP21.26■□□□□ 0.99
LDLR-204ENST00000545707 CCDC144AA2RUR9 1427 aa21.25■□□□□ 0.99
LDLR-204ENST00000545707 BRD4O60885 1362 aaPredicted RBP21.25■□□□□ 0.99
LDLR-204ENST00000545707 ARHGEF5Q12774 1597 aa21.23■□□□□ 0.99
LDLR-204ENST00000545707 PRAG1Q86YV5 1406 aa21.23■□□□□ 0.99
LDLR-204ENST00000545707 PLA2R1Q13018 1463 aa21.22■□□□□ 0.99
LDLR-204ENST00000545707 CC2D1BQ5T0F9 858 aaKnown RBP21.21■□□□□ 0.99
LDLR-204ENST00000545707 CDC42BPBQ9Y5S2 1711 aa21.21■□□□□ 0.99
LDLR-204ENST00000545707 PER1O15534 1290 aaPredicted RBP21.2■□□□□ 0.98
LDLR-204ENST00000545707 SYCP2Q9BX26 1530 aa21.2■□□□□ 0.98
LDLR-204ENST00000545707 RSPH4AQ5TD94 716 aa21.19■□□□□ 0.98
LDLR-204ENST00000545707 NLRP13Q86W25 1043 aa21.18■□□□□ 0.98
LDLR-204ENST00000545707 KTN1Q86UP2 1357 aaKnown RBP21.18■□□□□ 0.98
LDLR-204ENST00000545707 EXOC6Q8TAG9 804 aa21.17■□□□□ 0.98
LDLR-204ENST00000545707 ARHGAP5Q13017 1502 aa21.17■□□□□ 0.98
LDLR-204ENST00000545707 PLEKHH2Q8IVE3 1493 aa21.17■□□□□ 0.98
LDLR-204ENST00000545707 DISP3Q9P2K9 1392 aa21.16■□□□□ 0.98
LDLR-204ENST00000545707 CDCA7LQ96GN5 454 aa21.16■□□□□ 0.98
LDLR-204ENST00000545707 A2MP01023 1474 aa21.16■□□□□ 0.98
LDLR-204ENST00000545707 PAK3O75914 559 aaPredicted RBP21.16■□□□□ 0.98
LDLR-204ENST00000545707 RRP1P56182 461 aaKnown RBP21.16■□□□□ 0.98
LDLR-204ENST00000545707 TESK2Q96S53 571 aa21.16■□□□□ 0.98
LDLR-204ENST00000545707 PARD3Q8TEW0 1356 aa21.15■□□□□ 0.98
LDLR-204ENST00000545707 PREX2Q70Z35 1606 aa21.15■□□□□ 0.98
LDLR-204ENST00000545707 BCL11AQ9H165 835 aa21.15■□□□□ 0.98
LDLR-204ENST00000545707 PANK3Q9H999 370 aa21.15■□□□□ 0.98
LDLR-204ENST00000545707 RCAN3Q9UKA8 241 aa21.14■□□□□ 0.97
LDLR-204ENST00000545707 TRPM1Q7Z4N2 1603 aa21.14■□□□□ 0.97
LDLR-204ENST00000545707 E9PCH4 1651 aa21.14■□□□□ 0.97
LDLR-204ENST00000545707 TTC37Q6PGP7 1564 aa21.13■□□□□ 0.97
LDLR-204ENST00000545707 NOP58Q9Y2X3 529 aaKnown RBP21.11■□□□□ 0.97
LDLR-204ENST00000545707 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.1■□□□□ 0.975e-12■□□□□ 9.5
LDLR-204ENST00000545707 GPRASP1Q5JY77 1395 aa21.09■□□□□ 0.97
LDLR-204ENST00000545707 PLIN1O60240 522 aa21.08■□□□□ 0.96
LDLR-204ENST00000545707 COL17A1Q9UMD9 1497 aaPredicted RBP21.07■□□□□ 0.96
LDLR-204ENST00000545707 NBR1Q14596 966 aa21.06■□□□□ 0.96
LDLR-204ENST00000545707 ERBINQ96RT1 1412 aa21.06■□□□□ 0.96
LDLR-204ENST00000545707 ERCC6L2Q5T890 1561 aa21.06■□□□□ 0.96
LDLR-204ENST00000545707 TMF1P82094 1093 aa21.05■□□□□ 0.96
LDLR-204ENST00000545707 UNC13BO14795 1591 aa21.04■□□□□ 0.96
LDLR-204ENST00000545707 ANP32AP39687 249 aaKnown RBP21.03■□□□□ 0.96
LDLR-204ENST00000545707 PRDM15P57071 1507 aaPredicted RBP21.02■□□□□ 0.96
LDLR-204ENST00000545707 PDE3BQ13370 1112 aa21.02■□□□□ 0.96
LDLR-204ENST00000545707 MAST1Q9Y2H9 1570 aa21■□□□□ 0.95
LDLR-204ENST00000545707 IPO9Q96P70 1041 aaKnown RBP21■□□□□ 0.95
LDLR-204ENST00000545707 NPM2Q86SE8 214 aaKnown RBP20.99■□□□□ 0.95
LDLR-204ENST00000545707 SKAP1Q86WV1 359 aa20.99■□□□□ 0.95
LDLR-204ENST00000545707 ADAMTS8Q9UP79 889 aa20.99■□□□□ 0.95
LDLR-204ENST00000545707 IQGAP3Q86VI3 1631 aa20.99■□□□□ 0.95
LDLR-204ENST00000545707 CHD1O14646 1710 aa20.99■□□□□ 0.95
LDLR-204ENST00000545707 WASHC2CQ9Y4E1 1318 aa20.98■□□□□ 0.95
LDLR-204ENST00000545707 EFCAB2Q5VUJ9 269 aa20.97■□□□□ 0.95
LDLR-204ENST00000545707 AFAP1Q8N556 730 aa20.97■□□□□ 0.95
LDLR-204ENST00000545707 DUOX2Q9NRD8 1548 aa20.97■□□□□ 0.95
LDLR-204ENST00000545707 TRAPPC8Q9Y2L5 1435 aa20.97■□□□□ 0.95
LDLR-204ENST00000545707 MYO5CQ9NQX4 1742 aa20.97■□□□□ 0.95
LDLR-204ENST00000545707 ABCC2Q92887 1545 aa20.95■□□□□ 0.94
LDLR-204ENST00000545707 PLXNC1O60486 1568 aa20.95■□□□□ 0.94
LDLR-204ENST00000545707 CRBNQ96SW2 442 aa20.94■□□□□ 0.94
LDLR-204ENST00000545707 ZBTB47Q9UFB7 747 aaPredicted RBP20.94■□□□□ 0.94
LDLR-204ENST00000545707 PLCH2O75038 1416 aa20.93■□□□□ 0.94
LDLR-204ENST00000545707 KNSTRNQ9Y448 316 aa20.93■□□□□ 0.94
LDLR-204ENST00000545707 BLMP54132 1417 aaPredicted RBP20.93■□□□□ 0.94
LDLR-204ENST00000545707 MAGI2Q86UL8 1455 aa20.93■□□□□ 0.94
LDLR-204ENST00000545707 DEKP35659 375 aaKnown RBP20.93■□□□□ 0.94
LDLR-204ENST00000545707 C20orf194Q5TEA3 1177 aa20.93■□□□□ 0.94
LDLR-204ENST00000545707 ATP10AO60312 1499 aa20.92■□□□□ 0.94
LDLR-204ENST00000545707 PDE4AP27815 886 aa20.92■□□□□ 0.94
LDLR-204ENST00000545707 PPP2R1AP30153 589 aa20.91■□□□□ 0.94
LDLR-204ENST00000545707 LAMC1P11047 1609 aa20.91■□□□□ 0.94
LDLR-204ENST00000545707 TCERG1O14776 1098 aaKnown RBP20.9■□□□□ 0.94
LDLR-204ENST00000545707 SPAG9O60271 1321 aaKnown RBP20.9■□□□□ 0.94
LDLR-204ENST00000545707 EIF2AK4Q9P2K8 1649 aaKnown RBP20.9■□□□□ 0.94
LDLR-204ENST00000545707 WDR7Q9Y4E6 1490 aa20.89■□□□□ 0.94
LDLR-204ENST00000545707 SHROOM2Q13796 1616 aa20.89■□□□□ 0.93
LDLR-204ENST00000545707 AMER1Q5JTC6 1135 aaPredicted RBP20.88■□□□□ 0.93
LDLR-204ENST00000545707 WDR43Q15061 677 aaKnown RBP eCLIP20.87■□□□□ 0.93
LDLR-204ENST00000545707 PLEKHH1Q9ULM0 1364 aa20.86■□□□□ 0.93
LDLR-204ENST00000545707 BACH2Q9BYV9 841 aa20.85■□□□□ 0.93
LDLR-204ENST00000545707 MYT1LQ9UL68 1186 aa20.85■□□□□ 0.93
LDLR-204ENST00000545707 CCDC146Q8IYE0 955 aa20.83■□□□□ 0.93
LDLR-204ENST00000545707 ABCC1P33527 1531 aa20.83■□□□□ 0.92
LDLR-204ENST00000545707 ZMYM4Q5VZL5 1548 aa20.83■□□□□ 0.92
LDLR-204ENST00000545707 RNF17Q9BXT8 1623 aaKnown RBP20.82■□□□□ 0.92
LDLR-204ENST00000545707 ZCCHC11Q5TAX3 1644 aaKnown RBP20.82■□□□□ 0.92
LDLR-204ENST00000545707 DUSP27Q5VZP5 1158 aa20.82■□□□□ 0.92
LDLR-204ENST00000545707 INSRP06213 1382 aa20.81■□□□□ 0.92
LDLR-204ENST00000545707 MADDQ8WXG6 1647 aa20.81■□□□□ 0.92
LDLR-204ENST00000545707 KIF3BO15066 747 aa20.8■□□□□ 0.92
LDLR-204ENST00000545707 CFAP70Q5T0N1 1121 aa20.79■□□□□ 0.92
LDLR-204ENST00000545707 MS4A1P11836 297 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 311.4 ms