RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 HMMRO75330 724 aa12.9□□□□□ -0.35
PCDH9-204ENST00000544246 TOMM22Q9NS69 142 aa12.9□□□□□ -0.35
PCDH9-204ENST00000544246 STK31Q9BXU1 1019 aa12.89□□□□□ -0.35
PCDH9-204ENST00000544246 FOXD4L1Q9NU39 408 aa12.89□□□□□ -0.35
PCDH9-204ENST00000544246 WWC1Q8IX03 1113 aa12.88□□□□□ -0.35
PCDH9-204ENST00000544246 RSPH6AQ9H0K4 717 aa12.88□□□□□ -0.35
PCDH9-204ENST00000544246 GOLGA6L19H0YKK7 550 aa12.87□□□□□ -0.35
PCDH9-204ENST00000544246 ST18O60284 1047 aa12.87□□□□□ -0.35
PCDH9-204ENST00000544246 KTN1Q86UP2 1357 aaKnown RBP12.87□□□□□ -0.35
PCDH9-204ENST00000544246 DDX11L8A8MPP1 907 aa12.87□□□□□ -0.35
PCDH9-204ENST00000544246 H3BQV1 296 aa12.87□□□□□ -0.35
PCDH9-204ENST00000544246 TEX35Q5T0J7 233 aa12.87□□□□□ -0.35
PCDH9-204ENST00000544246 IFFO2Q5TF58 517 aa12.87□□□□□ -0.35
PCDH9-204ENST00000544246 SPAG9O60271 1321 aaKnown RBP12.86□□□□□ -0.35
PCDH9-204ENST00000544246 FAM69CQ0P6D2 419 aa12.86□□□□□ -0.35
PCDH9-204ENST00000544246 DCAF11Q8TEB1 546 aa12.85□□□□□ -0.35
PCDH9-204ENST00000544246 RCAN3Q9UKA8 241 aa12.85□□□□□ -0.35
PCDH9-204ENST00000544246 CHMP4CQ96CF2 233 aa12.85□□□□□ -0.35
PCDH9-204ENST00000544246 PAK3O75914 559 aaPredicted RBP12.84□□□□□ -0.35
PCDH9-204ENST00000544246 CCER2I3L3R5 266 aa12.84□□□□□ -0.35
PCDH9-204ENST00000544246 TCEAL9Q9UHQ7 104 aa12.84□□□□□ -0.35
PCDH9-204ENST00000544246 BECN2A8MW95 431 aa12.84□□□□□ -0.35
PCDH9-204ENST00000544246 SAFB2Q14151 953 aaKnown RBP eCLIP12.84□□□□□ -0.35
PCDH9-204ENST00000544246 PCMTD1Q96MG8 357 aaPredicted RBP12.84□□□□□ -0.35
PCDH9-204ENST00000544246 FRAT2O75474 233 aaPredicted RBP12.83□□□□□ -0.35
PCDH9-204ENST00000544246 FOXD4L5Q5VV16 416 aaPredicted RBP12.83□□□□□ -0.35
PCDH9-204ENST00000544246 FOXD4L4Q8WXT5 416 aaPredicted RBP12.83□□□□□ -0.35
PCDH9-204ENST00000544246 BICRAQ9NZM4 1560 aa12.83□□□□□ -0.36
PCDH9-204ENST00000544246 EEA1Q15075 1411 aa12.83□□□□□ -0.36
PCDH9-204ENST00000544246 AKAP17AQ02040 695 aaKnown RBP12.83□□□□□ -0.36
PCDH9-204ENST00000544246 CDR1P51861 262 aa12.83□□□□□ -0.36
PCDH9-204ENST00000544246 SIN3AQ96ST3 1273 aa12.83□□□□□ -0.36
PCDH9-204ENST00000544246 U2AF1L5P0DN76 240 aaPredicted RBP12.82□□□□□ -0.36
PCDH9-204ENST00000544246 U2AF1Q01081 240 aaKnown RBP eCLIP12.82□□□□□ -0.36
PCDH9-204ENST00000544246 IPO9Q96P70 1041 aaKnown RBP12.82□□□□□ -0.36
PCDH9-204ENST00000544246 FAM184AQ8NB25 1140 aa12.82□□□□□ -0.36
PCDH9-204ENST00000544246 IPO7O95373 1038 aaKnown RBP12.82□□□□□ -0.36
PCDH9-204ENST00000544246 ZNF592Q92610 1267 aa12.82□□□□□ -0.36
PCDH9-204ENST00000544246 VSIG10Q8N0Z9 540 aa12.82□□□□□ -0.36
PCDH9-204ENST00000544246 NOM1Q5C9Z4 860 aaKnown RBP12.81□□□□□ -0.36
PCDH9-204ENST00000544246 GOLGA3Q08378 1498 aa12.81□□□□□ -0.36
PCDH9-204ENST00000544246 CNKSR2Q8WXI2 1034 aa12.81□□□□□ -0.36
PCDH9-204ENST00000544246 CCDC47Q96A33 483 aaKnown RBP12.81□□□□□ -0.36
PCDH9-204ENST00000544246 AK7Q96M32 723 aa12.81□□□□□ -0.36
PCDH9-204ENST00000544246 SMC4Q9NTJ3 1288 aa12.81□□□□□ -0.36
PCDH9-204ENST00000544246 ATP6V1DQ9Y5K8 247 aa12.81□□□□□ -0.36
PCDH9-204ENST00000544246 CCDC9Q9Y3X0 531 aaKnown RBP12.8□□□□□ -0.36
PCDH9-204ENST00000544246 SKOR2Q2VWA4 1001 aaPredicted RBP12.8□□□□□ -0.36
PCDH9-204ENST00000544246 ANKRD20A12PQ8NF67 263 aa12.8□□□□□ -0.36
PCDH9-204ENST00000544246 RUFY1Q96T51 708 aa12.8□□□□□ -0.36
PCDH9-204ENST00000544246 SLC4A10Q6U841 1118 aa12.79□□□□□ -0.36
PCDH9-204ENST00000544246 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.78□□□□□ -0.368e-7■■■■■ 145.9
PCDH9-204ENST00000544246 SYNE3Q6ZMZ3 975 aa12.78□□□□□ -0.36
PCDH9-204ENST00000544246 CTDP1Q9Y5B0 961 aaPredicted RBP12.78□□□□□ -0.36
PCDH9-204ENST00000544246 AQRO60306 1485 aaKnown RBP eCLIP12.78□□□□□ -0.36
PCDH9-204ENST00000544246 STK26Q9P289 416 aa12.78□□□□□ -0.36
PCDH9-204ENST00000544246 HMGXB3Q12766 1538 aa12.78□□□□□ -0.36
PCDH9-204ENST00000544246 ACBD3Q9H3P7 528 aa12.77□□□□□ -0.36
PCDH9-204ENST00000544246 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.76□□□□□ -0.37
PCDH9-204ENST00000544246 DDX49Q9Y6V7 483 aaKnown RBP12.76□□□□□ -0.37
PCDH9-204ENST00000544246 PTPRGP23470 1445 aa12.76□□□□□ -0.37
PCDH9-204ENST00000544246 GAPVD1Q14C86 1478 aa12.76□□□□□ -0.37
PCDH9-204ENST00000544246 RALBP1Q15311 655 aa12.76□□□□□ -0.37
PCDH9-204ENST00000544246 GTF2E1P29083 439 aaPredicted RBP12.76□□□□□ -0.37
PCDH9-204ENST00000544246 AMOTL1Q8IY63 956 aa12.76□□□□□ -0.37
PCDH9-204ENST00000544246 TRIM34Q9BYJ4 488 aa12.76□□□□□ -0.37
PCDH9-204ENST00000544246 CEP162Q5TB80 1403 aa12.75□□□□□ -0.37
PCDH9-204ENST00000544246 TRIM29Q14134 588 aa12.75□□□□□ -0.37
PCDH9-204ENST00000544246 CCNB3Q8WWL7 1395 aa12.75□□□□□ -0.37
PCDH9-204ENST00000544246 HOMER1Q86YM7 354 aa12.75□□□□□ -0.37
PCDH9-204ENST00000544246 IFT140Q96RY7 1462 aa12.75□□□□□ -0.37
PCDH9-204ENST00000544246 MAP7D2Q96T17 732 aa12.75□□□□□ -0.37
PCDH9-204ENST00000544246 HOOK1Q9UJC3 728 aaKnown RBP12.75□□□□□ -0.37
PCDH9-204ENST00000544246 MCTP1Q6DN14 999 aa12.75□□□□□ -0.37
PCDH9-204ENST00000544246 LMOD3Q0VAK6 560 aa12.74□□□□□ -0.37
PCDH9-204ENST00000544246 CCDC191Q8NCU4 936 aa12.74□□□□□ -0.37
PCDH9-204ENST00000544246 EFCAB2Q5VUJ9 269 aa12.74□□□□□ -0.37
PCDH9-204ENST00000544246 NOL10Q9BSC4 688 aaKnown RBP12.73□□□□□ -0.37
PCDH9-204ENST00000544246 ARGLU1Q9NWB6 273 aaPredicted RBP12.73□□□□□ -0.37
PCDH9-204ENST00000544246 HSPA5P11021 654 aaKnown RBP12.73□□□□□ -0.37
PCDH9-204ENST00000544246 DCTN1Q14203 1278 aa12.73□□□□□ -0.37
PCDH9-204ENST00000544246 CT47A1Q5JQC4 288 aaPredicted RBP12.72□□□□□ -0.37
PCDH9-204ENST00000544246 GGT6Q6P531 493 aa12.72□□□□□ -0.37
PCDH9-204ENST00000544246 RILPL2Q969X0 211 aa12.72□□□□□ -0.37
PCDH9-204ENST00000544246 CENPJQ9HC77 1338 aaPredicted RBP12.72□□□□□ -0.37
PCDH9-204ENST00000544246 RAD54L2Q9Y4B4 1467 aa12.72□□□□□ -0.37
PCDH9-204ENST00000544246 NAP1L1P55209 391 aaKnown RBP12.72□□□□□ -0.37
PCDH9-204ENST00000544246 ODF2Q5BJF6 829 aa12.72□□□□□ -0.37
PCDH9-204ENST00000544246 RAD21O60216 631 aa12.72□□□□□ -0.37
PCDH9-204ENST00000544246 CPLX2Q6PUV4 134 aaKnown RBP12.72□□□□□ -0.37
PCDH9-204ENST00000544246 LAMC3Q9Y6N6 1575 aa12.71□□□□□ -0.37
PCDH9-204ENST00000544246 FGD5Q6ZNL6 1462 aa12.71□□□□□ -0.37
PCDH9-204ENST00000544246 EIF3AQ14152 1382 aaKnown RBP12.71□□□□□ -0.38
PCDH9-204ENST00000544246 LRRFIP1Q32MZ4 808 aaKnown RBP12.71□□□□□ -0.38
PCDH9-204ENST00000544246 FOXD4L6Q3SYB3 417 aaPredicted RBP12.7□□□□□ -0.38
PCDH9-204ENST00000544246 FOXD4L3Q6VB84 417 aaPredicted RBP12.7□□□□□ -0.38
PCDH9-204ENST00000544246 CCDC43Q96MW1 224 aaKnown RBP12.7□□□□□ -0.38
PCDH9-204ENST00000544246 HSP90B2PQ58FF3 399 aa12.69□□□□□ -0.38
PCDH9-204ENST00000544246 MNS1Q8NEH6 495 aa12.69□□□□□ -0.38
PCDH9-204ENST00000544246 ROCK2O75116 1388 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms