RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 NOP58Q9Y2X3 529 aaKnown RBP13□□□□□ -0.33
CDH13-204ENST00000539548 ARHGEF5Q12774 1597 aa13□□□□□ -0.33
CDH13-204ENST00000539548 NUP160Q12769 1436 aa13□□□□□ -0.33
CDH13-204ENST00000539548 ST20-MTHFSA0A0A6YYL1 179 aa13□□□□□ -0.33
CDH13-204ENST00000539548 TSPY4P0CV99 314 aa12.99□□□□□ -0.33
CDH13-204ENST00000539548 TSPY10P0CW01 314 aa12.99□□□□□ -0.33
CDH13-204ENST00000539548 ATP10BO94823 1461 aa12.99□□□□□ -0.33
CDH13-204ENST00000539548 DCAF11Q8TEB1 546 aa12.97□□□□□ -0.33
CDH13-204ENST00000539548 RIMBP3CA6NJZ7 1639 aa12.97□□□□□ -0.33
CDH13-204ENST00000539548 RIMBP3BA6NNM3 1639 aa12.97□□□□□ -0.33
CDH13-204ENST00000539548 RIMBP3Q9UFD9 1639 aa12.97□□□□□ -0.33
CDH13-204ENST00000539548 KDM2AQ9Y2K7 1162 aa12.97□□□□□ -0.33
CDH13-204ENST00000539548 TRPM1Q7Z4N2 1603 aa12.95□□□□□ -0.34
CDH13-204ENST00000539548 PDE3BQ13370 1112 aa12.94□□□□□ -0.34
CDH13-204ENST00000539548 IPO9Q96P70 1041 aaKnown RBP12.94□□□□□ -0.34
CDH13-204ENST00000539548 PAK3O75914 559 aaPredicted RBP12.94□□□□□ -0.34
CDH13-204ENST00000539548 ANP32AP39687 249 aaKnown RBP12.94□□□□□ -0.34
CDH13-204ENST00000539548 RRP1P56182 461 aaKnown RBP12.94□□□□□ -0.34
CDH13-204ENST00000539548 PARD3Q8TEW0 1356 aa12.94□□□□□ -0.34
CDH13-204ENST00000539548 HNRNPMP52272 730 aaKnown RBP eCLIP12.93□□□□□ -0.34
CDH13-204ENST00000539548 NLRP13Q86W25 1043 aa12.93□□□□□ -0.34
CDH13-204ENST00000539548 FAM135AQ9P2D6 1515 aa12.93□□□□□ -0.34
CDH13-204ENST00000539548 FBLN2P98095 1184 aa12.93□□□□□ -0.34
CDH13-204ENST00000539548 RSPH4AQ5TD94 716 aa12.93□□□□□ -0.34
CDH13-204ENST00000539548 PRAG1Q86YV5 1406 aa12.92□□□□□ -0.34
CDH13-204ENST00000539548 SENP3-EIF4A1A0A087X0R7 540 aa12.91□□□□□ -0.34
CDH13-204ENST00000539548 DEKP35659 375 aaKnown RBP12.91□□□□□ -0.34
CDH13-204ENST00000539548 RCAN3Q9UKA8 241 aa12.91□□□□□ -0.34
CDH13-204ENST00000539548 WASHC2CQ9Y4E1 1318 aa12.91□□□□□ -0.34
CDH13-204ENST00000539548 CCDC141Q6ZP82 1450 aa12.91□□□□□ -0.34
CDH13-204ENST00000539548 LAMC1P11047 1609 aa12.91□□□□□ -0.34
CDH13-204ENST00000539548 INSRP06213 1382 aa12.91□□□□□ -0.34
CDH13-204ENST00000539548 PER1O15534 1290 aaPredicted RBP12.91□□□□□ -0.34
CDH13-204ENST00000539548 CDC42BPBQ9Y5S2 1711 aa12.91□□□□□ -0.34
CDH13-204ENST00000539548 GPRASP1Q5JY77 1395 aa12.9□□□□□ -0.34
CDH13-204ENST00000539548 SAMD9LQ8IVG5 1584 aa12.9□□□□□ -0.34
CDH13-204ENST00000539548 PREX2Q70Z35 1606 aa12.9□□□□□ -0.34
CDH13-204ENST00000539548 TCERG1O14776 1098 aaKnown RBP12.89□□□□□ -0.35
CDH13-204ENST00000539548 EXOC6Q8TAG9 804 aa12.89□□□□□ -0.35
CDH13-204ENST00000539548 ZBTB47Q9UFB7 747 aaPredicted RBP12.89□□□□□ -0.35
CDH13-204ENST00000539548 ZMYM4Q5VZL5 1548 aa12.89□□□□□ -0.35
CDH13-204ENST00000539548 CCDC144AA2RUR9 1427 aa12.89□□□□□ -0.35
CDH13-204ENST00000539548 UNC13BO14795 1591 aa12.88□□□□□ -0.35
CDH13-204ENST00000539548 MAST1Q9Y2H9 1570 aa12.88□□□□□ -0.35
CDH13-204ENST00000539548 COL17A1Q9UMD9 1497 aaPredicted RBP12.87□□□□□ -0.35
CDH13-204ENST00000539548 PRDM15P57071 1507 aaPredicted RBP12.87□□□□□ -0.35
CDH13-204ENST00000539548 PLA2R1Q13018 1463 aa12.87□□□□□ -0.35
CDH13-204ENST00000539548 NBPF1Q3BBV0 1214 aa12.86□□□□□ -0.35
CDH13-204ENST00000539548 A2MP01023 1474 aa12.85□□□□□ -0.35
CDH13-204ENST00000539548 MS4A1P11836 297 aa12.85□□□□□ -0.35
CDH13-204ENST00000539548 TESK2Q96S53 571 aa12.85□□□□□ -0.35
CDH13-204ENST00000539548 BLMP54132 1417 aaPredicted RBP12.85□□□□□ -0.35
CDH13-204ENST00000539548 NBR1Q14596 966 aa12.84□□□□□ -0.35
CDH13-204ENST00000539548 MYO5CQ9NQX4 1742 aa12.84□□□□□ -0.35
CDH13-204ENST00000539548 IQGAP3Q86VI3 1631 aa12.84□□□□□ -0.35
CDH13-204ENST00000539548 EIF2AK4Q9P2K8 1649 aaKnown RBP12.84□□□□□ -0.35
CDH13-204ENST00000539548 CYB5RLQ6IPT4 315 aa12.83□□□□□ -0.36
CDH13-204ENST00000539548 RGL3Q3MIN7 710 aa12.83□□□□□ -0.36
CDH13-204ENST00000539548 SALL2Q9Y467 1007 aaPredicted RBP12.83□□□□□ -0.36
CDH13-204ENST00000539548 ATP10AO60312 1499 aa12.83□□□□□ -0.36
CDH13-204ENST00000539548 ERBINQ96RT1 1412 aa12.82□□□□□ -0.36
CDH13-204ENST00000539548 DISP3Q9P2K9 1392 aa12.82□□□□□ -0.36
CDH13-204ENST00000539548 PDE4AP27815 886 aa12.82□□□□□ -0.36
CDH13-204ENST00000539548 CDCA7LQ96GN5 454 aa12.82□□□□□ -0.36
CDH13-204ENST00000539548 PLXNC1O60486 1568 aa12.82□□□□□ -0.36
CDH13-204ENST00000539548 PLEKHH2Q8IVE3 1493 aa12.82□□□□□ -0.36
CDH13-204ENST00000539548 BACH2Q9BYV9 841 aa12.81□□□□□ -0.36
CDH13-204ENST00000539548 CHD1O14646 1710 aa12.81□□□□□ -0.36
CDH13-204ENST00000539548 SYCP2Q9BX26 1530 aa12.81□□□□□ -0.36
CDH13-204ENST00000539548 PANK3Q9H999 370 aa12.81□□□□□ -0.36
CDH13-204ENST00000539548 TMF1P82094 1093 aa12.8□□□□□ -0.36
CDH13-204ENST00000539548 CC2D1BQ5T0F9 858 aaKnown RBP12.79□□□□□ -0.36
CDH13-204ENST00000539548 RTL5Q5HYW3 569 aaPredicted RBP12.79□□□□□ -0.36
CDH13-204ENST00000539548 ARHGAP5Q13017 1502 aa12.78□□□□□ -0.36
CDH13-204ENST00000539548 RNF17Q9BXT8 1623 aaKnown RBP12.78□□□□□ -0.36
CDH13-204ENST00000539548 TTC37Q6PGP7 1564 aa12.78□□□□□ -0.36
CDH13-204ENST00000539548 MAGI2Q86UL8 1455 aa12.78□□□□□ -0.36
CDH13-204ENST00000539548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.78□□□□□ -0.36
CDH13-204ENST00000539548 DUOX2Q9NRD8 1548 aa12.78□□□□□ -0.36
CDH13-204ENST00000539548 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.77□□□□□ -0.36
CDH13-204ENST00000539548 PLIN1O60240 522 aa12.75□□□□□ -0.37
CDH13-204ENST00000539548 TRHP20396 242 aaPredicted RBP12.75□□□□□ -0.37
CDH13-204ENST00000539548 NPM2Q86SE8 214 aaKnown RBP12.75□□□□□ -0.37
CDH13-204ENST00000539548 CRBNQ96SW2 442 aa12.75□□□□□ -0.37
CDH13-204ENST00000539548 WDR7Q9Y4E6 1490 aa12.73□□□□□ -0.37
CDH13-204ENST00000539548 ADAMTS8Q9UP79 889 aa12.73□□□□□ -0.37
CDH13-204ENST00000539548 IQGAP1P46940 1657 aa12.73□□□□□ -0.37
CDH13-204ENST00000539548 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
CDH13-204ENST00000539548 SHROOM2Q13796 1616 aa12.71□□□□□ -0.37
CDH13-204ENST00000539548 PPP2R1AP30153 589 aa12.71□□□□□ -0.37
CDH13-204ENST00000539548 STAC3Q96MF2 364 aa12.71□□□□□ -0.37
CDH13-204ENST00000539548 MADDQ8WXG6 1647 aa12.71□□□□□ -0.38
CDH13-204ENST00000539548 PPM1GO15355 546 aaPredicted RBP12.7□□□□□ -0.38
CDH13-204ENST00000539548 KNSTRNQ9Y448 316 aa12.7□□□□□ -0.38
CDH13-204ENST00000539548 KDM2BQ8NHM5 1336 aa12.7□□□□□ -0.38
CDH13-204ENST00000539548 DDRGK1Q96HY6 314 aa12.7□□□□□ -0.38
CDH13-204ENST00000539548 SYNMO15061 1565 aa12.69□□□□□ -0.38
CDH13-204ENST00000539548 CLASP1Q7Z460 1538 aa12.69□□□□□ -0.38
CDH13-204ENST00000539548 ZNF521Q96K83 1311 aa12.69□□□□□ -0.38
CDH13-204ENST00000539548 CDCA8Q53HL2 280 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms