RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 PNISRQ8TF01 805 aaKnown RBP15.63■□□□□ 0.09
SYNE1-234ENST00000536990 CHD1O14646 1710 aa15.63■□□□□ 0.09
SYNE1-234ENST00000536990 DCAF11Q8TEB1 546 aa15.62■□□□□ 0.09
SYNE1-234ENST00000536990 CNGB1Q14028 1251 aaPredicted RBP15.62■□□□□ 0.09
SYNE1-234ENST00000536990 FAM135AQ9P2D6 1515 aa15.6■□□□□ 0.09
SYNE1-234ENST00000536990 ARHGAP5Q13017 1502 aa15.59■□□□□ 0.09
SYNE1-234ENST00000536990 LRPPRCP42704 1394 aaKnown RBP15.59■□□□□ 0.09
SYNE1-234ENST00000536990 SYCP2Q9BX26 1530 aa15.58■□□□□ 0.09
SYNE1-234ENST00000536990 ST20-MTHFSA0A0A6YYL1 179 aa15.58■□□□□ 0.09
SYNE1-234ENST00000536990 E9PCH4 1651 aa15.57■□□□□ 0.08
SYNE1-234ENST00000536990 SHROOM2Q13796 1616 aa15.57■□□□□ 0.08
SYNE1-234ENST00000536990 TMC1Q8TDI8 760 aa15.57■□□□□ 0.08
SYNE1-234ENST00000536990 TTC37Q6PGP7 1564 aa15.57■□□□□ 0.08
SYNE1-234ENST00000536990 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.57■□□□□ 0.08
SYNE1-234ENST00000536990 MAST1Q9Y2H9 1570 aa15.56■□□□□ 0.08
SYNE1-234ENST00000536990 CCDC144AA2RUR9 1427 aa15.56■□□□□ 0.08
SYNE1-234ENST00000536990 CCDC136Q96JN2 1154 aa15.55■□□□□ 0.08
SYNE1-234ENST00000536990 BRD4O60885 1362 aaPredicted RBP15.55■□□□□ 0.08
SYNE1-234ENST00000536990 KTN1Q86UP2 1357 aaKnown RBP15.55■□□□□ 0.08
SYNE1-234ENST00000536990 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.54■□□□□ 0.08
SYNE1-234ENST00000536990 ABCC2Q92887 1545 aa15.54■□□□□ 0.08
SYNE1-234ENST00000536990 MYO5CQ9NQX4 1742 aa15.53■□□□□ 0.08
SYNE1-234ENST00000536990 PLEKHH2Q8IVE3 1493 aa15.53■□□□□ 0.08
SYNE1-234ENST00000536990 MYBBP1AQ9BQG0 1328 aaKnown RBP15.53■□□□□ 0.08
SYNE1-234ENST00000536990 UNC13BO14795 1591 aa15.53■□□□□ 0.08
SYNE1-234ENST00000536990 SENP3-EIF4A1A0A087X0R7 540 aa15.53■□□□□ 0.08
SYNE1-234ENST00000536990 RALBP1Q15311 655 aa15.52■□□□□ 0.08
SYNE1-234ENST00000536990 RGL3Q3MIN7 710 aa15.52■□□□□ 0.08
SYNE1-234ENST00000536990 ERCC6L2Q5T890 1561 aa15.51■□□□□ 0.07
SYNE1-234ENST00000536990 MYT1LQ9UL68 1186 aa15.51■□□□□ 0.07
SYNE1-234ENST00000536990 NOP58Q9Y2X3 529 aaKnown RBP15.51■□□□□ 0.07
SYNE1-234ENST00000536990 PRAG1Q86YV5 1406 aa15.51■□□□□ 0.07
SYNE1-234ENST00000536990 PLXNC1O60486 1568 aa15.5■□□□□ 0.07
SYNE1-234ENST00000536990 TRPM1Q7Z4N2 1603 aa15.5■□□□□ 0.07
SYNE1-234ENST00000536990 PLA2R1Q13018 1463 aa15.49■□□□□ 0.07
SYNE1-234ENST00000536990 PAK3O75914 559 aaPredicted RBP15.49■□□□□ 0.07
SYNE1-234ENST00000536990 IQGAP3Q86VI3 1631 aa15.48■□□□□ 0.07
SYNE1-234ENST00000536990 DUOX2Q9NRD8 1548 aa15.47■□□□□ 0.07
SYNE1-234ENST00000536990 NBPF1Q3BBV0 1214 aa15.47■□□□□ 0.07
SYNE1-234ENST00000536990 PARD3Q8TEW0 1356 aa15.47■□□□□ 0.07
SYNE1-234ENST00000536990 EFCAB2Q5VUJ9 269 aa15.46■□□□□ 0.07
SYNE1-234ENST00000536990 A2MP01023 1474 aa15.46■□□□□ 0.07
SYNE1-234ENST00000536990 PLCH2O75038 1416 aa15.46■□□□□ 0.07
SYNE1-234ENST00000536990 RRP1P56182 461 aaKnown RBP15.45■□□□□ 0.06
SYNE1-234ENST00000536990 GPRASP1Q5JY77 1395 aa15.45■□□□□ 0.06
SYNE1-234ENST00000536990 ERBINQ96RT1 1412 aa15.44■□□□□ 0.06
SYNE1-234ENST00000536990 NLRP13Q86W25 1043 aa15.44■□□□□ 0.06
SYNE1-234ENST00000536990 ZCCHC11Q5TAX3 1644 aaKnown RBP15.43■□□□□ 0.06
SYNE1-234ENST00000536990 IPO9Q96P70 1041 aaKnown RBP15.43■□□□□ 0.06
SYNE1-234ENST00000536990 PER1O15534 1290 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-234ENST00000536990 ATP10AO60312 1499 aa15.42■□□□□ 0.06
SYNE1-234ENST00000536990 MAGI2Q86UL8 1455 aa15.42■□□□□ 0.06
SYNE1-234ENST00000536990 ANP32AP39687 249 aaKnown RBP15.42■□□□□ 0.06
SYNE1-234ENST00000536990 RCAN3Q9UKA8 241 aa15.41■□□□□ 0.06
SYNE1-234ENST00000536990 LAMC1P11047 1609 aa15.41■□□□□ 0.06
SYNE1-234ENST00000536990 EXOC6Q8TAG9 804 aa15.41■□□□□ 0.06
SYNE1-234ENST00000536990 UHRF1BP1LA0JNW5 1464 aa15.41■□□□□ 0.06
SYNE1-234ENST00000536990 DEKP35659 375 aaKnown RBP15.41■□□□□ 0.06
SYNE1-234ENST00000536990 PDE3BQ13370 1112 aa15.4■□□□□ 0.06
SYNE1-234ENST00000536990 EIF2AK4Q9P2K8 1649 aaKnown RBP15.4■□□□□ 0.06
SYNE1-234ENST00000536990 COL17A1Q9UMD9 1497 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-234ENST00000536990 PRDM15P57071 1507 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-234ENST00000536990 ABCC1P33527 1531 aa15.39■□□□□ 0.05
SYNE1-234ENST00000536990 TRAPPC8Q9Y2L5 1435 aa15.39■□□□□ 0.05
SYNE1-234ENST00000536990 TESK2Q96S53 571 aa15.38■□□□□ 0.05
SYNE1-234ENST00000536990 CLASP1Q7Z460 1538 aa15.38■□□□□ 0.05
SYNE1-234ENST00000536990 INSRP06213 1382 aa15.38■□□□□ 0.05
SYNE1-234ENST00000536990 SPAG9O60271 1321 aaKnown RBP15.37■□□□□ 0.05
SYNE1-234ENST00000536990 WASHC2CQ9Y4E1 1318 aa15.37■□□□□ 0.05
SYNE1-234ENST00000536990 ZMYM4Q5VZL5 1548 aa15.36■□□□□ 0.05
SYNE1-234ENST00000536990 DISP3Q9P2K9 1392 aa15.36■□□□□ 0.05
SYNE1-234ENST00000536990 TMF1P82094 1093 aa15.36■□□□□ 0.05
SYNE1-234ENST00000536990 NBR1Q14596 966 aa15.36■□□□□ 0.05
SYNE1-234ENST00000536990 SALL2Q9Y467 1007 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-234ENST00000536990 BLMP54132 1417 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-234ENST00000536990 TCERG1O14776 1098 aaKnown RBP15.35■□□□□ 0.05
SYNE1-234ENST00000536990 ZBTB47Q9UFB7 747 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-234ENST00000536990 CDCA7LQ96GN5 454 aa15.34■□□□□ 0.05
SYNE1-234ENST00000536990 AFAP1Q8N556 730 aa15.34■□□□□ 0.05
SYNE1-234ENST00000536990 RTEL1-TNFRSF6BF6WH68 1400 aa15.33■□□□□ 0.05
SYNE1-234ENST00000536990 PANK3Q9H999 370 aa15.33■□□□□ 0.05
SYNE1-234ENST00000536990 CC2D1BQ5T0F9 858 aaKnown RBP15.33■□□□□ 0.04
SYNE1-234ENST00000536990 ARAP3Q8WWN8 1544 aa15.31■□□□□ 0.04
SYNE1-234ENST00000536990 RNF17Q9BXT8 1623 aaKnown RBP15.31■□□□□ 0.04
SYNE1-234ENST00000536990 MS4A1P11836 297 aa15.3■□□□□ 0.04
SYNE1-234ENST00000536990 PDE4AP27815 886 aa15.3■□□□□ 0.04
SYNE1-234ENST00000536990 ZFYVE16Q7Z3T8 1539 aa15.29■□□□□ 0.04
SYNE1-234ENST00000536990 BACH2Q9BYV9 841 aa15.29■□□□□ 0.04
SYNE1-234ENST00000536990 TRPM2O94759 1503 aa15.28■□□□□ 0.04
SYNE1-234ENST00000536990 STAC3Q96MF2 364 aa15.28■□□□□ 0.04
SYNE1-234ENST00000536990 MADDQ8WXG6 1647 aa15.27■□□□□ 0.04
SYNE1-234ENST00000536990 SPHKAPQ2M3C7 1700 aa15.27■□□□□ 0.04
SYNE1-234ENST00000536990 PLIN1O60240 522 aa15.27■□□□□ 0.03
SYNE1-234ENST00000536990 PTPRTO14522 1441 aa15.26■□□□□ 0.03
SYNE1-234ENST00000536990 CEP152O94986 1710 aa15.26■□□□□ 0.03
SYNE1-234ENST00000536990 KANK1Q14678 1352 aa15.26■□□□□ 0.03
SYNE1-234ENST00000536990 WDR7Q9Y4E6 1490 aa15.26■□□□□ 0.03
SYNE1-234ENST00000536990 DEPDC5O75140 1603 aa15.25■□□□□ 0.03
SYNE1-234ENST00000536990 FANCAO15360 1455 aa15.25■□□□□ 0.03
SYNE1-234ENST00000536990 NPM2Q86SE8 214 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms