RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	BRD4	O60885	1362 aa	Predicted RBP	11.37	□□□□□ -0.59
CSTF3-208	ENST00000528865	CDC42BPB	Q9Y5S2	1711 aa		11.36	□□□□□ -0.59
CSTF3-208	ENST00000528865	ST20-MTHFS	A0A0A6YYL1	179 aa		11.36	□□□□□ -0.59
CSTF3-208	ENST00000528865	ZNF326	Q5BKZ1	582 aa	Known RBP	11.36	□□□□□ -0.59
CSTF3-208	ENST00000528865	DCAF11	Q8TEB1	546 aa		11.36	□□□□□ -0.59
CSTF3-208	ENST00000528865	PRAG1	Q86YV5	1406 aa		11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	MSH5	O43196	834 aa		11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	ATP10A	O60312	1499 aa		11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	PLA2R1	Q13018	1463 aa		11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	PLEKHH2	Q8IVE3	1493 aa		11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	UNC13B	O14795	1591 aa		11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	SHROOM2	Q13796	1616 aa		11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.35	□□□□□ -0.59
CSTF3-208	ENST00000528865	INSR	P06213	1382 aa		11.34	□□□□□ -0.59
CSTF3-208	ENST00000528865	WASHC2C	Q9Y4E1	1318 aa		11.34	□□□□□ -0.59
CSTF3-208	ENST00000528865	TMC1	Q8TDI8	760 aa		11.33	□□□□□ -0.6
CSTF3-208	ENST00000528865	KDM2A	Q9Y2K7	1162 aa		11.33	□□□□□ -0.6
CSTF3-208	ENST00000528865		E9PCH4	1651 aa		11.33	□□□□□ -0.6
CSTF3-208	ENST00000528865	LAMC1	P11047	1609 aa		11.32	□□□□□ -0.6
CSTF3-208	ENST00000528865	PER1	O15534	1290 aa	Predicted RBP	11.32	□□□□□ -0.6
CSTF3-208	ENST00000528865	PARD3	Q8TEW0	1356 aa		11.31	□□□□□ -0.6
CSTF3-208	ENST00000528865	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
CSTF3-208	ENST00000528865	B4GALNT3	Q6L9W6	998 aa		11.31	□□□□□ -0.6
CSTF3-208	ENST00000528865	CCDC144A	A2RUR9	1427 aa		11.31	□□□□□ -0.6
CSTF3-208	ENST00000528865	PLXNC1	O60486	1568 aa		11.31	□□□□□ -0.6
CSTF3-208	ENST00000528865	MAGI2	Q86UL8	1455 aa		11.31	□□□□□ -0.6
CSTF3-208	ENST00000528865	TRPM1	Q7Z4N2	1603 aa		11.31	□□□□□ -0.6
CSTF3-208	ENST00000528865	POLR3GL	Q9BT43	218 aa		11.3	□□□□□ -0.6
CSTF3-208	ENST00000528865	IQGAP3	Q86VI3	1631 aa		11.3	□□□□□ -0.6
CSTF3-208	ENST00000528865	ABCC2	Q92887	1545 aa		11.3	□□□□□ -0.6
CSTF3-208	ENST00000528865	PDE3B	Q13370	1112 aa		11.29	□□□□□ -0.6
CSTF3-208	ENST00000528865	A2M	P01023	1474 aa		11.29	□□□□□ -0.6
CSTF3-208	ENST00000528865	SYCP2	Q9BX26	1530 aa		11.29	□□□□□ -0.6
CSTF3-208	ENST00000528865	DUOX2	Q9NRD8	1548 aa		11.29	□□□□□ -0.6
CSTF3-208	ENST00000528865	PLCH2	O75038	1416 aa		11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	ERBIN	Q96RT1	1412 aa		11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	NLRP13	Q86W25	1043 aa		11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	TESK2	Q96S53	571 aa		11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	PRDM15	P57071	1507 aa	Predicted RBP	11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	ARHGAP5	Q13017	1502 aa		11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	ZMYM4	Q5VZL5	1548 aa		11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	TTC37	Q6PGP7	1564 aa		11.28	□□□□□ -0.6
CSTF3-208	ENST00000528865	UHRF1BP1L	A0JNW5	1464 aa		11.27	□□□□□ -0.6
CSTF3-208	ENST00000528865	NBPF1	Q3BBV0	1214 aa		11.27	□□□□□ -0.61
CSTF3-208	ENST00000528865	STAC3	Q96MF2	364 aa		11.27	□□□□□ -0.61
CSTF3-208	ENST00000528865	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.26	□□□□□ -0.61
CSTF3-208	ENST00000528865	EFCAB2	Q5VUJ9	269 aa		11.26	□□□□□ -0.61
CSTF3-208	ENST00000528865	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.24	□□□□□ -0.61
CSTF3-208	ENST00000528865	CHD1	O14646	1710 aa		11.24	□□□□□ -0.61
CSTF3-208	ENST00000528865	MYO5C	Q9NQX4	1742 aa		11.24	□□□□□ -0.61
CSTF3-208	ENST00000528865	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.24	□□□□□ -0.61
CSTF3-208	ENST00000528865	TMF1	P82094	1093 aa		11.22	□□□□□ -0.61
CSTF3-208	ENST00000528865	RGL3	Q3MIN7	710 aa		11.22	□□□□□ -0.61
CSTF3-208	ENST00000528865	ARAP3	Q8WWN8	1544 aa		11.22	□□□□□ -0.61
CSTF3-208	ENST00000528865	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.22	□□□□□ -0.61	6e-8	■□□□□ 10.4
CSTF3-208	ENST00000528865	PTPRT	O14522	1441 aa		11.21	□□□□□ -0.61
CSTF3-208	ENST00000528865	DISP3	Q9P2K9	1392 aa		11.21	□□□□□ -0.61
CSTF3-208	ENST00000528865	RRP1	P56182	461 aa	Known RBP	11.21	□□□□□ -0.61
CSTF3-208	ENST00000528865	CCDC136	Q96JN2	1154 aa		11.21	□□□□□ -0.61
CSTF3-208	ENST00000528865	ERCC6L2	Q5T890	1561 aa		11.2	□□□□□ -0.62
CSTF3-208	ENST00000528865	BLM	P54132	1417 aa	Predicted RBP	11.2	□□□□□ -0.62
CSTF3-208	ENST00000528865	CNGB1	Q14028	1251 aa	Predicted RBP	11.2	□□□□□ -0.62
CSTF3-208	ENST00000528865	PANK3	Q9H999	370 aa		11.2	□□□□□ -0.62
CSTF3-208	ENST00000528865	ABCC1	P33527	1531 aa		11.19	□□□□□ -0.62
CSTF3-208	ENST00000528865	SCAPER	Q9BY12	1400 aa		11.19	□□□□□ -0.62
CSTF3-208	ENST00000528865	TRAPPC8	Q9Y2L5	1435 aa		11.19	□□□□□ -0.62
CSTF3-208	ENST00000528865	RCAN3	Q9UKA8	241 aa		11.19	□□□□□ -0.62
CSTF3-208	ENST00000528865	RNF17	Q9BXT8	1623 aa	Known RBP	11.19	□□□□□ -0.62
CSTF3-208	ENST00000528865	CLASP1	Q7Z460	1538 aa		11.18	□□□□□ -0.62
CSTF3-208	ENST00000528865	NEURL4	Q96JN8	1562 aa		11.17	□□□□□ -0.62
CSTF3-208	ENST00000528865	POTED	Q86YR6	584 aa		11.17	□□□□□ -0.62
CSTF3-208	ENST00000528865	MYT1L	Q9UL68	1186 aa		11.17	□□□□□ -0.62
CSTF3-208	ENST00000528865	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.17	□□□□□ -0.62
CSTF3-208	ENST00000528865	WDR7	Q9Y4E6	1490 aa		11.16	□□□□□ -0.62
CSTF3-208	ENST00000528865	NPC1L1	Q9UHC9	1359 aa		11.16	□□□□□ -0.62
CSTF3-208	ENST00000528865	TRPM2	O94759	1503 aa		11.15	□□□□□ -0.62
CSTF3-208	ENST00000528865	SPAG9	O60271	1321 aa	Known RBP	11.15	□□□□□ -0.62
CSTF3-208	ENST00000528865	CDCA8	Q53HL2	280 aa		11.15	□□□□□ -0.62
CSTF3-208	ENST00000528865	MADD	Q8WXG6	1647 aa		11.14	□□□□□ -0.63
CSTF3-208	ENST00000528865	TCERG1	O14776	1098 aa	Known RBP	11.14	□□□□□ -0.63
CSTF3-208	ENST00000528865	ERICH6	Q7L0X2	663 aa		11.14	□□□□□ -0.63
CSTF3-208	ENST00000528865	EXOC6	Q8TAG9	804 aa		11.14	□□□□□ -0.63
CSTF3-208	ENST00000528865	VWDE	Q8N2E2	1590 aa		11.14	□□□□□ -0.63
CSTF3-208	ENST00000528865	SCAF11	Q99590	1463 aa	Known RBP	11.13	□□□□□ -0.63
CSTF3-208	ENST00000528865	SLC24A1	O60721	1099 aa		11.13	□□□□□ -0.63
CSTF3-208	ENST00000528865	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.13	□□□□□ -0.63
CSTF3-208	ENST00000528865	CC2D1B	Q5T0F9	858 aa	Known RBP	11.13	□□□□□ -0.63
CSTF3-208	ENST00000528865	IQGAP1	P46940	1657 aa		11.13	□□□□□ -0.63
CSTF3-208	ENST00000528865	DEPDC5	O75140	1603 aa		11.13	□□□□□ -0.63
CSTF3-208	ENST00000528865	MS4A1	P11836	297 aa		11.12	□□□□□ -0.63
CSTF3-208	ENST00000528865	PPP2R1A	P30153	589 aa		11.12	□□□□□ -0.63
CSTF3-208	ENST00000528865	CDCA7L	Q96GN5	454 aa		11.12	□□□□□ -0.63
CSTF3-208	ENST00000528865	NOP58	Q9Y2X3	529 aa	Known RBP	11.12	□□□□□ -0.63
CSTF3-208	ENST00000528865	ZFYVE16	Q7Z3T8	1539 aa		11.11	□□□□□ -0.63
CSTF3-208	ENST00000528865	AFAP1	Q8N556	730 aa		11.11	□□□□□ -0.63
CSTF3-208	ENST00000528865	IPO9	Q96P70	1041 aa	Known RBP	11.11	□□□□□ -0.63
CSTF3-208	ENST00000528865	KIAA1210	Q9ULL0	1709 aa		11.11	□□□□□ -0.63
CSTF3-208	ENST00000528865	SPHKAP	Q2M3C7	1700 aa		11.1	□□□□□ -0.63
CSTF3-208	ENST00000528865	SENP3-EIF4A1	A0A087X0R7	540 aa		11.1	□□□□□ -0.63
CSTF3-208	ENST00000528865	KNSTRN	Q9Y448	316 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms