RNA–Protein interactions for RNA: ENST00000527733.5

USP47-207, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP47, Length 4,525 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-207ENST00000527733 NLRP13Q86W25 1043 aa19.67■□□□□ 0.74
USP47-207ENST00000527733 CCDC141Q6ZP82 1450 aa19.67■□□□□ 0.74
USP47-207ENST00000527733 UPF2Q9HAU5 1272 aaKnown RBP19.66■□□□□ 0.74
USP47-207ENST00000527733 EVC2Q86UK5 1308 aa19.66■□□□□ 0.74
USP47-207ENST00000527733 KIF14Q15058 1648 aa19.66■□□□□ 0.74
USP47-207ENST00000527733 PANK3Q9H999 370 aa19.65■□□□□ 0.74
USP47-207ENST00000527733 NGDNQ8NEJ9 315 aaKnown RBP19.65■□□□□ 0.74
USP47-207ENST00000527733 CAMSAP2Q08AD1 1489 aa19.64■□□□□ 0.74
USP47-207ENST00000527733 U2AF1L5P0DN76 240 aaPredicted RBP19.64■□□□□ 0.73
USP47-207ENST00000527733 U2AF1Q01081 240 aaKnown RBP eCLIP19.64■□□□□ 0.73
USP47-207ENST00000527733 ABCC5O15440 1437 aa19.62■□□□□ 0.73
USP47-207ENST00000527733 FTSJ3Q8IY81 847 aaKnown RBP19.62■□□□□ 0.73
USP47-207ENST00000527733 EIF4G3O43432 1585 aaKnown RBP19.61■□□□□ 0.73
USP47-207ENST00000527733 NUTM2FA1L443 756 aa19.61■□□□□ 0.73
USP47-207ENST00000527733 PTPN23Q9H3S7 1636 aa19.61■□□□□ 0.73
USP47-207ENST00000527733 UGGT2Q9NYU1 1516 aa19.61■□□□□ 0.73
USP47-207ENST00000527733 MINK1Q8N4C8 1332 aaPredicted RBP19.6■□□□□ 0.73
USP47-207ENST00000527733 CENPJQ9HC77 1338 aaPredicted RBP19.59■□□□□ 0.73
USP47-207ENST00000527733 THOC2Q8NI27 1593 aaKnown RBP19.59■□□□□ 0.73
USP47-207ENST00000527733 ATP10BO94823 1461 aa19.58■□□□□ 0.72
USP47-207ENST00000527733 FRAT1Q92837 279 aaPredicted RBP19.57■□□□□ 0.72
USP47-207ENST00000527733 SLC52A1Q9NWF4 448 aa19.57■□□□□ 0.72
USP47-207ENST00000527733 ADGRL1O94910 1474 aa19.57■□□□□ 0.72
USP47-207ENST00000527733 PRKRIP1Q9H875 184 aaPredicted RBP19.56■□□□□ 0.72
USP47-207ENST00000527733 RAPGEF6Q8TEU7 1601 aa19.56■□□□□ 0.72
USP47-207ENST00000527733 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.56■□□□□ 0.722e-6■■■□□ 18.9
USP47-207ENST00000527733 NUP153P49790 1475 aaKnown RBP19.55■□□□□ 0.72
USP47-207ENST00000527733 CTTNBP2Q8WZ74 1663 aa19.55■□□□□ 0.72
USP47-207ENST00000527733 AKNAQ7Z591 1439 aa19.55■□□□□ 0.72
USP47-207ENST00000527733 MYBBP1AQ9BQG0 1328 aaKnown RBP19.55■□□□□ 0.72
USP47-207ENST00000527733 MS4A1P11836 297 aa19.55■□□□□ 0.72
USP47-207ENST00000527733 CFAP70Q5T0N1 1121 aa19.54■□□□□ 0.72
USP47-207ENST00000527733 NUP160Q12769 1436 aa19.54■□□□□ 0.72
USP47-207ENST00000527733 NCOA1Q15788 1441 aa19.53■□□□□ 0.72
USP47-207ENST00000527733 CGNL1Q0VF96 1302 aa19.53■□□□□ 0.72
USP47-207ENST00000527733 RTF1Q92541 710 aaKnown RBP19.53■□□□□ 0.72
USP47-207ENST00000527733 MYT1Q01538 1121 aa19.52■□□□□ 0.72
USP47-207ENST00000527733 GPATCH8Q9UKJ3 1502 aaKnown RBP19.52■□□□□ 0.72
USP47-207ENST00000527733 TMEM132EQ6IEE7 984 aa19.52■□□□□ 0.72
USP47-207ENST00000527733 CCDC7Q96M83 1385 aa19.52■□□□□ 0.71
USP47-207ENST00000527733 KIF7Q2M1P5 1343 aa19.52■□□□□ 0.71
USP47-207ENST00000527733 KIAA0556O60303 1618 aa19.51■□□□□ 0.71
USP47-207ENST00000527733 PPP4R2Q9NY27 417 aa19.5■□□□□ 0.71
USP47-207ENST00000527733 ABCA5Q8WWZ7 1642 aa19.5■□□□□ 0.71
USP47-207ENST00000527733 CHMP4BQ9H444 224 aaKnown RBP19.5■□□□□ 0.71
USP47-207ENST00000527733 FANCAO15360 1455 aa19.49■□□□□ 0.71
USP47-207ENST00000527733 CALD1Q05682 793 aaKnown RBP19.49■□□□□ 0.71
USP47-207ENST00000527733 NBPF8Q3BBV2 869 aa19.48■□□□□ 0.71
USP47-207ENST00000527733 ARXQ96QS3 562 aa19.48■□□□□ 0.71
USP47-207ENST00000527733 CSB-PGBD3P0DP91 1061 aa19.47■□□□□ 0.71
USP47-207ENST00000527733 NBPF1Q3BBV0 1214 aa19.47■□□□□ 0.71
USP47-207ENST00000527733 HSP90AA1P07900 732 aaKnown RBP19.47■□□□□ 0.71
USP47-207ENST00000527733 AMPHP49418 695 aa19.47■□□□□ 0.71
USP47-207ENST00000527733 POGZQ7Z3K3 1410 aa19.46■□□□□ 0.71
USP47-207ENST00000527733 TXNDC2Q86VQ3 553 aa19.46■□□□□ 0.71
USP47-207ENST00000527733 COG3Q96JB2 828 aa19.46■□□□□ 0.71
USP47-207ENST00000527733 ASXL2Q76L83 1435 aa19.45■□□□□ 0.7
USP47-207ENST00000527733 PLCH2O75038 1416 aa19.44■□□□□ 0.7
USP47-207ENST00000527733 DENND4BO75064 1496 aaPredicted RBP19.44■□□□□ 0.7
USP47-207ENST00000527733 WDR97A6NE52 1622 aa19.44■□□□□ 0.7
USP47-207ENST00000527733 RPGRIP1LQ68CZ1 1315 aa19.44■□□□□ 0.7
USP47-207ENST00000527733 THEMISQ8N1K5 641 aaPredicted RBP19.43■□□□□ 0.7
USP47-207ENST00000527733 PBRM1Q86U86 1689 aa19.42■□□□□ 0.7
USP47-207ENST00000527733 ANKRD30BQ9BXX2 1392 aa19.42■□□□□ 0.7
USP47-207ENST00000527733 WASHC2AQ641Q2 1341 aa19.42■□□□□ 0.7
USP47-207ENST00000527733 GOLGA2Q08379 1002 aa19.41■□□□□ 0.7
USP47-207ENST00000527733 PDE3BQ13370 1112 aa19.41■□□□□ 0.7
USP47-207ENST00000527733 CCDC146Q8IYE0 955 aa19.41■□□□□ 0.7
USP47-207ENST00000527733 RCAN3Q9UKA8 241 aa19.41■□□□□ 0.7
USP47-207ENST00000527733 DISP1Q96F81 1524 aa19.4■□□□□ 0.7
USP47-207ENST00000527733 TARBP1Q13395 1621 aaKnown RBP19.39■□□□□ 0.7
USP47-207ENST00000527733 ERBINQ96RT1 1412 aa19.39■□□□□ 0.69
USP47-207ENST00000527733 WDR7Q9Y4E6 1490 aa19.37■□□□□ 0.69
USP47-207ENST00000527733 CNTLNQ9NXG0 1405 aa19.37■□□□□ 0.69
USP47-207ENST00000527733 CABP2Q9NPB3 220 aa19.37■□□□□ 0.69
USP47-207ENST00000527733 IPO8O15397 1037 aaKnown RBP19.37■□□□□ 0.69
USP47-207ENST00000527733 DHX29Q7Z478 1369 aaKnown RBP19.37■□□□□ 0.69
USP47-207ENST00000527733 LMOD3Q0VAK6 560 aa19.36■□□□□ 0.69
USP47-207ENST00000527733 LTV1Q96GA3 475 aaPredicted RBP19.36■□□□□ 0.69
USP47-207ENST00000527733 B4GALNT3Q6L9W6 998 aa19.35■□□□□ 0.69
USP47-207ENST00000527733 PRAM1Q96QH2 718 aa19.34■□□□□ 0.69
USP47-207ENST00000527733 CHMP4AQ9BY43 222 aa19.33■□□□□ 0.68
USP47-207ENST00000527733 PTPRKQ15262 1439 aa19.32■□□□□ 0.68
USP47-207ENST00000527733 PSME1Q06323 249 aa19.32■□□□□ 0.68
USP47-207ENST00000527733 ERICH6BQ5W0A0 696 aa19.31■□□□□ 0.68
USP47-207ENST00000527733 PPP6R1Q9UPN7 881 aa19.3■□□□□ 0.68
USP47-207ENST00000527733 ABCC2Q92887 1545 aa19.3■□□□□ 0.68
USP47-207ENST00000527733 RGS3P49796 1198 aa19.3■□□□□ 0.68
USP47-207ENST00000527733 ITSN2Q9NZM3 1697 aa19.3■□□□□ 0.68
USP47-207ENST00000527733 DIAPH1O60610 1272 aaKnown RBP19.29■□□□□ 0.68
USP47-207ENST00000527733 RRP7AQ9Y3A4 280 aaKnown RBP19.28■□□□□ 0.68
USP47-207ENST00000527733 ATF3P18847 181 aa19.28■□□□□ 0.68
USP47-207ENST00000527733 ANKLE2Q86XL3 938 aa19.28■□□□□ 0.68
USP47-207ENST00000527733 GGNBP2Q9H3C7 697 aa19.28■□□□□ 0.68
USP47-207ENST00000527733 CEP170Q5SW79 1584 aa19.26■□□□□ 0.67
USP47-207ENST00000527733 SLC26A8Q96RN1 970 aa19.26■□□□□ 0.67
USP47-207ENST00000527733 TCOF1Q13428 1488 aaKnown RBP19.26■□□□□ 0.67
USP47-207ENST00000527733 NGEFQ8N5V2 710 aa19.26■□□□□ 0.67
USP47-207ENST00000527733 CFAP43Q8NDM7 1665 aa19.26■□□□□ 0.67
USP47-207ENST00000527733 SYCP2Q9BX26 1530 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms