RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TOP2BQ02880 1626 aa14.9□□□□□ -0.02
SYNPO-204ENST00000519664 CENPJQ9HC77 1338 aaPredicted RBP14.9□□□□□ -0.02
SYNPO-204ENST00000519664 AFAP1Q8N556 730 aa14.9□□□□□ -0.02
SYNPO-204ENST00000519664 TAOK2Q9UL54 1235 aa14.9□□□□□ -0.02
SYNPO-204ENST00000519664 ANKRD50Q9ULJ7 1429 aa14.89□□□□□ -0.03
SYNPO-204ENST00000519664 FANCIQ9NVI1 1328 aa14.89□□□□□ -0.03
SYNPO-204ENST00000519664 MFAP1P55081 439 aaKnown RBP14.88□□□□□ -0.03
SYNPO-204ENST00000519664 C11orf95C9JLR9 678 aaPredicted RBP14.88□□□□□ -0.03
SYNPO-204ENST00000519664 CNTLNQ9NXG0 1405 aa14.88□□□□□ -0.03
SYNPO-204ENST00000519664 PNNQ9H307 717 aaKnown RBP14.87□□□□□ -0.03
SYNPO-204ENST00000519664 RWDD1Q9H446 243 aaPredicted RBP14.87□□□□□ -0.03
SYNPO-204ENST00000519664 CASC1Q6TDU7 716 aa14.87□□□□□ -0.03
SYNPO-204ENST00000519664 HSCBQ8IWL3 235 aa14.87□□□□□ -0.03
SYNPO-204ENST00000519664 ADAMTS8Q9UP79 889 aa14.86□□□□□ -0.03
SYNPO-204ENST00000519664 POLA1P09884 1462 aaPredicted RBP14.86□□□□□ -0.03
SYNPO-204ENST00000519664 PAK3O75914 559 aaPredicted RBP14.85□□□□□ -0.03
SYNPO-204ENST00000519664 OS9Q13438 667 aaPredicted RBP14.85□□□□□ -0.03
SYNPO-204ENST00000519664 IPO8O15397 1037 aaKnown RBP14.85□□□□□ -0.03
SYNPO-204ENST00000519664 PLCB2Q00722 1185 aa14.85□□□□□ -0.03
SYNPO-204ENST00000519664 TMEM132EQ6IEE7 984 aa14.85□□□□□ -0.03
SYNPO-204ENST00000519664 EIF3AQ14152 1382 aaKnown RBP14.85□□□□□ -0.03
SYNPO-204ENST00000519664 MINK1Q8N4C8 1332 aaPredicted RBP14.84□□□□□ -0.03
SYNPO-204ENST00000519664 HAP1P54257 671 aaPredicted RBP14.84□□□□□ -0.03
SYNPO-204ENST00000519664 FOXD4L1Q9NU39 408 aa14.83□□□□□ -0.03
SYNPO-204ENST00000519664 PRG4Q92954 1404 aaPredicted RBP14.83□□□□□ -0.03
SYNPO-204ENST00000519664 FYCO1Q9BQS8 1478 aa14.83□□□□□ -0.04
SYNPO-204ENST00000519664 TERF2IPQ9NYB0 399 aa14.83□□□□□ -0.04
SYNPO-204ENST00000519664 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
SYNPO-204ENST00000519664 PRDM2Q13029 1718 aa14.83□□□□□ -0.04
SYNPO-204ENST00000519664 RTF1Q92541 710 aaKnown RBP14.82□□□□□ -0.04
SYNPO-204ENST00000519664 ANO8Q9HCE9 1232 aaPredicted RBP14.82□□□□□ -0.04
SYNPO-204ENST00000519664 TIAM1Q13009 1591 aa14.82□□□□□ -0.04
SYNPO-204ENST00000519664 NAP1L5Q96NT1 182 aaPredicted RBP14.82□□□□□ -0.04
SYNPO-204ENST00000519664 TOPBP1Q92547 1522 aa14.81□□□□□ -0.04
SYNPO-204ENST00000519664 CFAP70Q5T0N1 1121 aa14.81□□□□□ -0.04
SYNPO-204ENST00000519664 PTMAP06454 111 aaKnown RBP14.81□□□□□ -0.04
SYNPO-204ENST00000519664 CHMP4BQ9H444 224 aaKnown RBP14.81□□□□□ -0.04
SYNPO-204ENST00000519664 HFM1A2PYH4 1435 aa14.81□□□□□ -0.04
SYNPO-204ENST00000519664 AKNAQ7Z591 1439 aa14.81□□□□□ -0.04
SYNPO-204ENST00000519664 SLC4A10Q6U841 1118 aa14.8□□□□□ -0.04
SYNPO-204ENST00000519664 CYB5RLQ6IPT4 315 aa14.8□□□□□ -0.04
SYNPO-204ENST00000519664 NAIPQ13075 1403 aa14.79□□□□□ -0.04
SYNPO-204ENST00000519664 PMFBP1Q8TBY8 1022 aa14.79□□□□□ -0.04
SYNPO-204ENST00000519664 LTV1Q96GA3 475 aaPredicted RBP14.79□□□□□ -0.04
SYNPO-204ENST00000519664 BICRAQ9NZM4 1560 aa14.79□□□□□ -0.04
SYNPO-204ENST00000519664 KCNJ4P48050 445 aa14.78□□□□□ -0.04
SYNPO-204ENST00000519664 CENPQQ7L2Z9 268 aaPredicted RBP14.78□□□□□ -0.04
SYNPO-204ENST00000519664 PNISRQ8TF01 805 aaKnown RBP14.78□□□□□ -0.04
SYNPO-204ENST00000519664 E9PSI1 815 aa14.77□□□□□ -0.04
SYNPO-204ENST00000519664 HDGFP51858 240 aaKnown RBP14.77□□□□□ -0.04
SYNPO-204ENST00000519664 PANK1Q8TE04 598 aa14.76□□□□□ -0.05
SYNPO-204ENST00000519664 FAM161AQ3B820 660 aa14.76□□□□□ -0.05
SYNPO-204ENST00000519664 GGNBP2Q9H3C7 697 aa14.75□□□□□ -0.05
SYNPO-204ENST00000519664 DNTTIP2Q5QJE6 756 aaKnown RBP14.75□□□□□ -0.05
SYNPO-204ENST00000519664 CGNL1Q0VF96 1302 aa14.75□□□□□ -0.05
SYNPO-204ENST00000519664 VGFO15240 615 aaPredicted RBP14.74□□□□□ -0.05
SYNPO-204ENST00000519664 GRIN2BQ13224 1484 aa14.74□□□□□ -0.05
SYNPO-204ENST00000519664 CDK13Q14004 1512 aaKnown RBP14.74□□□□□ -0.05
SYNPO-204ENST00000519664 NAP1L2Q9ULW6 460 aaPredicted RBP14.74□□□□□ -0.05
SYNPO-204ENST00000519664 NOL8Q76FK4 1167 aaKnown RBP14.73□□□□□ -0.05
SYNPO-204ENST00000519664 FGD1P98174 961 aa14.73□□□□□ -0.05
SYNPO-204ENST00000519664 RSPH6AQ9H0K4 717 aa14.73□□□□□ -0.05
SYNPO-204ENST00000519664 CABP2Q9NPB3 220 aa14.73□□□□□ -0.05
SYNPO-204ENST00000519664 NGDNQ8NEJ9 315 aaKnown RBP14.72□□□□□ -0.05
SYNPO-204ENST00000519664 SKAP1Q86WV1 359 aa14.72□□□□□ -0.05
SYNPO-204ENST00000519664 EVC2Q86UK5 1308 aa14.72□□□□□ -0.05
SYNPO-204ENST00000519664 MTHFSP49914 203 aa14.71□□□□□ -0.05
SYNPO-204ENST00000519664 ANKRD45Q5TZF3 282 aa14.71□□□□□ -0.05
SYNPO-204ENST00000519664 ZKSCAN2Q63HK3 967 aa14.71□□□□□ -0.05
SYNPO-204ENST00000519664 SLC12A5Q9H2X9 1139 aa14.71□□□□□ -0.05
SYNPO-204ENST00000519664 CC2D2AQ9P2K1 1620 aa14.71□□□□□ -0.05
SYNPO-204ENST00000519664 PPP2R1AP30153 589 aa14.7□□□□□ -0.06
SYNPO-204ENST00000519664 USP35Q9P2H5 1018 aa14.7□□□□□ -0.06
SYNPO-204ENST00000519664 HMOX1P09601 288 aa14.7□□□□□ -0.06
SYNPO-204ENST00000519664 RIPK4P57078 832 aa14.7□□□□□ -0.06
SYNPO-204ENST00000519664 CALD1Q05682 793 aaKnown RBP14.7□□□□□ -0.06
SYNPO-204ENST00000519664 FOXD4L5Q5VV16 416 aaPredicted RBP14.69□□□□□ -0.06
SYNPO-204ENST00000519664 FOXD4L4Q8WXT5 416 aaPredicted RBP14.69□□□□□ -0.06
SYNPO-204ENST00000519664 HMGXB3Q12766 1538 aa14.69□□□□□ -0.06
SYNPO-204ENST00000519664 BRD4O60885 1362 aaPredicted RBP14.69□□□□□ -0.06
SYNPO-204ENST00000519664 KIAA1107Q9UPP5 1409 aa14.68□□□□□ -0.06
SYNPO-204ENST00000519664 BCAR3O75815 825 aa14.68□□□□□ -0.06
SYNPO-204ENST00000519664 AMPHP49418 695 aa14.68□□□□□ -0.06
SYNPO-204ENST00000519664 TCP11L2Q8N4U5 519 aa14.68□□□□□ -0.06
SYNPO-204ENST00000519664 TRIM6-TRIM34B2RNG4 842 aa14.68□□□□□ -0.06
SYNPO-204ENST00000519664 STK31Q9BXU1 1019 aa14.68□□□□□ -0.06
SYNPO-204ENST00000519664 ZNF330Q9Y3S2 320 aaPredicted RBP14.67□□□□□ -0.06
SYNPO-204ENST00000519664 PCF11O94913 1555 aaKnown RBP14.67□□□□□ -0.06
SYNPO-204ENST00000519664 C9orf84Q5VXU9 1444 aa14.67□□□□□ -0.06
SYNPO-204ENST00000519664 NECTIN2Q92692 538 aa14.66□□□□□ -0.06
SYNPO-204ENST00000519664 DAPK1P53355 1430 aa14.66□□□□□ -0.06
SYNPO-204ENST00000519664 EFCAB5A4FU69 1503 aa14.66□□□□□ -0.06
SYNPO-204ENST00000519664 MIA2Q96PC5 1412 aa14.66□□□□□ -0.06
SYNPO-204ENST00000519664 DIAPH1O60610 1272 aaKnown RBP14.65□□□□□ -0.06
SYNPO-204ENST00000519664 TROQ12816 1431 aaPredicted RBP14.65□□□□□ -0.06
SYNPO-204ENST00000519664 RUNDC1Q96C34 613 aa14.65□□□□□ -0.06
SYNPO-204ENST00000519664 DZIP1LQ8IYY4 767 aaKnown RBP14.65□□□□□ -0.06
SYNPO-204ENST00000519664 L1TD1Q5T7N2 865 aaKnown RBP14.65□□□□□ -0.07
SYNPO-204ENST00000519664 LNPKQ9C0E8 428 aa14.65□□□□□ -0.07
SYNPO-204ENST00000519664 EPRSP07814 1512 aaKnown RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms