RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 LRCH3Q96II8 777 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 JPH4Q96JJ6 628 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 KCNK17Q96T54 332 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 KRTAP9-9Q9BYP9 154 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 KRTAP9-4Q9BYQ2 154 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 DNAJC5Q9H3Z4 198 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 BCL2L12Q9HB09 334 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 LHX6Q9UPM6 363 aa1.24□□□□□ -2.21
RNU4-54P-201ENST00000516428 FAM181BA6NEQ2 426 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 EVI5O60447 810 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 PHF14O94880 888 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 PTPN5P54829 565 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 PPP4CP60510 307 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 KCNC4Q03721 635 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 GRIPAP1Q4V328 841 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 XP32Q5T750 250 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 LCE3BQ5TA77 95 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 SLF2Q8IX21 1173 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 FBXO22Q8NEZ5 403 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 BBXQ8WY36 941 aaPredicted RBP1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 LARP6Q9BRS8 491 aaKnown RBP1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 MFRPQ9BY79 579 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 KRTAP4-7Q9BYR0 210 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 CDKN2AIPQ9NXV6 580 aaPredicted RBP1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 RABGEF1Q9UJ41 708 aa1.23□□□□□ -2.21
RNU4-54P-201ENST00000516428 KIF3CO14782 793 aa1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 MAP3K7O43318 606 aa1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 FAM98CQ17RN3 349 aaKnown RBP1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 KMT5BQ4FZB7 885 aa1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 TREML4Q6UXN2 200 aa1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 UPF1Q92900 1129 aaKnown RBP eCLIP1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 PSMG3-AS1Q96PY0 264 aa1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 KRTAP4-12Q9BQ66 201 aa1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 TMUB1Q9BVT8 246 aa1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 TSR3Q9UJK0 312 aaKnown RBP1.22□□□□□ -2.21
RNU4-54P-201ENST00000516428 SOWAHBA6NEL2 793 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 RGL2O15211 777 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 ZBTB24O43167 697 aaPredicted RBP1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 RNF40O75150 1001 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 FOSBP53539 338 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 PKD2Q13563 968 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 DSG2Q14126 1118 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 E2F4Q16254 413 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 THSD4Q6ZMP0 1018 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 RBM46Q8TBY0 533 aaKnown RBP1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 OXER1Q8TDS5 423 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 RNF25Q96BH1 459 aaPredicted RBP1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 MS4A4AQ96JQ5 239 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 IL21Q9HBE4 155 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 ANO8Q9HCE9 1232 aaPredicted RBP1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 RBM27Q9P2N5 1060 aaKnown RBP1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 VPS9D1Q9Y2B5 631 aa1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 V9GY48 417 aaPredicted RBP1.21□□□□□ -2.22
RNU4-54P-201ENST00000516428 TRIM6-TRIM34B2RNG4 842 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 WIPF1O43516 503 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 CD2BP2O95400 341 aaKnown RBP1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 OATP04181 439 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 PSEN2P49810 448 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 LMOD2Q6P5Q4 547 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 SULF1Q8IWU6 871 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 KRI1Q8N9T8 703 aaKnown RBP1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 ZFRQ96KR1 1074 aaKnown RBP1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 ZBED2Q9BTP6 218 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 CRISPLD2Q9H0B8 497 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 RTN4Q9NQC3 1192 aaKnown RBP1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 AXIN2Q9Y2T1 843 aa1.2□□□□□ -2.22
RNU4-54P-201ENST00000516428 NRG2O14511 850 aaPredicted RBP1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 HRO43593 1189 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 NR1I2O75469 434 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 ITGBL1O95965 494 aaPredicted RBP1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 NBR1Q14596 966 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 MFSD10Q14728 455 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 PKDCCQ504Y2 493 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 C6orf132Q5T0Z8 1188 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 KRTAP5-3Q6L8H2 238 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 CFAP44Q96MT7 982 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 KRTAP4-2Q9BYR5 136 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 KIAA1468Q9P260 1216 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 DAXXQ9UER7 740 aaPredicted RBP1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 HPS5Q9UPZ3 1129 aa1.19□□□□□ -2.22
RNU4-54P-201ENST00000516428 BTBD11A6QL63 1104 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 BHMG1C9JSJ3 638 aaPredicted RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 GFRA3O60609 400 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 DGAT1O75907 488 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 DNAJB2P25686 324 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 PRSS12P56730 875 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 INSM1Q01101 510 aaPredicted RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 EN1Q05925 392 aaPredicted RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 DIXDC1Q155Q3 683 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 Q3C1V9 767 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 POTEEQ6S8J3 1075 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 TMEM92Q6UXU6 159 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 PNMA1Q8ND90 353 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 SLC16A10Q8TF71 515 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 ARHGEF1Q92888 912 aaKnown RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 KHSRPQ92945 711 aaKnown RBP eCLIP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 RBM33Q96EV2 1170 aaKnown RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 REPIN1Q9BWE0 567 aaKnown RBP1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 KRTAP9-8Q9BYQ0 159 aa1.18□□□□□ -2.22
RNU4-54P-201ENST00000516428 SENP2Q9HC62 589 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms