RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 HSCBQ8IWL3 235 aa10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 PMFBP1Q8TBY8 1022 aa10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 ANKRD30BQ9BXX2 1392 aa10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 U2AF1L5P0DN76 240 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 U2AF1Q01081 240 aaKnown RBP eCLIP10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 GSE1Q14687 1217 aa10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 HSP90AB1P08238 724 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-216ENST00000512820 POGKQ9P215 609 aa10.73□□□□□ -0.69
LIMCH1-216ENST00000512820 PTPRKQ15262 1439 aa10.73□□□□□ -0.69
LIMCH1-216ENST00000512820 APAF1O14727 1248 aa10.73□□□□□ -0.69
LIMCH1-216ENST00000512820 NCLP19338 710 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-216ENST00000512820 CLUAP1Q96AJ1 413 aa10.73□□□□□ -0.69
LIMCH1-216ENST00000512820 NAP1L5Q96NT1 182 aaPredicted RBP10.72□□□□□ -0.69
LIMCH1-216ENST00000512820 NCOA1Q15788 1441 aa10.72□□□□□ -0.69
LIMCH1-216ENST00000512820 SAFB2Q14151 953 aaKnown RBP eCLIP10.72□□□□□ -0.69
LIMCH1-216ENST00000512820 PTPN23Q9H3S7 1636 aa10.72□□□□□ -0.69
LIMCH1-216ENST00000512820 E9PSI1 815 aa10.72□□□□□ -0.69
LIMCH1-216ENST00000512820 KIF3BO15066 747 aa10.72□□□□□ -0.69
LIMCH1-216ENST00000512820 ROCK1Q13464 1354 aa10.71□□□□□ -0.69
LIMCH1-216ENST00000512820 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.71□□□□□ -0.69
LIMCH1-216ENST00000512820 EPRSP07814 1512 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-216ENST00000512820 SPAG9O60271 1321 aaKnown RBP10.71□□□□□ -0.7
LIMCH1-216ENST00000512820 ADAMTS8Q9UP79 889 aa10.71□□□□□ -0.7
LIMCH1-216ENST00000512820 PRDM2Q13029 1718 aa10.71□□□□□ -0.7
LIMCH1-216ENST00000512820 SRPK2P78362 688 aaKnown RBP10.71□□□□□ -0.7
LIMCH1-216ENST00000512820 CHMP4BQ9H444 224 aaKnown RBP10.71□□□□□ -0.7
LIMCH1-216ENST00000512820 NBPF1Q3BBV0 1214 aa10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 PTPRGP23470 1445 aa10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 GRIN2BQ13224 1484 aa10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 CDK13Q14004 1512 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 HECW1Q76N89 1606 aa10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 PNNQ9H307 717 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 RRP7AQ9Y3A4 280 aaKnown RBP10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 PRG4Q92954 1404 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-216ENST00000512820 ITPRIPQ8IWB1 547 aa10.69□□□□□ -0.7
LIMCH1-216ENST00000512820 GZF1Q9H116 711 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-216ENST00000512820 GGT6Q6P531 493 aa10.69□□□□□ -0.7
LIMCH1-216ENST00000512820 COG6Q9Y2V7 657 aa10.69□□□□□ -0.7
LIMCH1-216ENST00000512820 BACH2Q9BYV9 841 aa10.69□□□□□ -0.7
LIMCH1-216ENST00000512820 CGNL1Q0VF96 1302 aa10.69□□□□□ -0.7
LIMCH1-216ENST00000512820 MFAP1P55081 439 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-216ENST00000512820 IPO8O15397 1037 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-216ENST00000512820 CASC1Q6TDU7 716 aa10.68□□□□□ -0.7
LIMCH1-216ENST00000512820 SMC4Q9NTJ3 1288 aa10.67□□□□□ -0.7
LIMCH1-216ENST00000512820 TROQ12816 1431 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-216ENST00000512820 BCL2L13Q9BXK5 485 aa10.67□□□□□ -0.7
LIMCH1-216ENST00000512820 WASHC2CQ9Y4E1 1318 aa10.67□□□□□ -0.7
LIMCH1-216ENST00000512820 ABCC5O15440 1437 aa10.67□□□□□ -0.7
LIMCH1-216ENST00000512820 NFKBIBQ15653 356 aa10.67□□□□□ -0.7
LIMCH1-216ENST00000512820 STK26Q9P289 416 aa10.67□□□□□ -0.7
LIMCH1-216ENST00000512820 CC2D2AQ9P2K1 1620 aa10.66□□□□□ -0.7
LIMCH1-216ENST00000512820 CUL7Q14999 1698 aa10.66□□□□□ -0.7
LIMCH1-216ENST00000512820 TRAK1Q9UPV9 953 aa10.66□□□□□ -0.7
LIMCH1-216ENST00000512820 RPRD2Q5VT52 1461 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-216ENST00000512820 C9orf84Q5VXU9 1444 aa10.65□□□□□ -0.7
LIMCH1-216ENST00000512820 PPP2R1AP30153 589 aa10.64□□□□□ -0.71
LIMCH1-216ENST00000512820 GOLGA6L3A6NEY3 463 aa10.64□□□□□ -0.71
LIMCH1-216ENST00000512820 NGEFQ8N5V2 710 aa10.64□□□□□ -0.71
LIMCH1-216ENST00000512820 GBP4Q96PP9 640 aa10.62□□□□□ -0.71
LIMCH1-216ENST00000512820 PLPPR3Q6T4P5 718 aa10.62□□□□□ -0.71
LIMCH1-216ENST00000512820 HDGFL2Q7Z4V5 671 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-216ENST00000512820 NUTM2DQ5VT03 806 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-216ENST00000512820 ZKSCAN2Q63HK3 967 aa10.61□□□□□ -0.71
LIMCH1-216ENST00000512820 PANK1Q8TE04 598 aa10.61□□□□□ -0.71
LIMCH1-216ENST00000512820 PTMAP06454 111 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-216ENST00000512820 IQGAP2Q13576 1575 aa10.6□□□□□ -0.71
LIMCH1-216ENST00000512820 STAC3Q96MF2 364 aa10.6□□□□□ -0.71
LIMCH1-216ENST00000512820 IL27Q8NEV9 243 aa10.6□□□□□ -0.71
LIMCH1-216ENST00000512820 UGGT2Q9NYU1 1516 aa10.59□□□□□ -0.71
LIMCH1-216ENST00000512820 RUNDC1Q96C34 613 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 KIAA0586Q9BVV6 1533 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 TERF2IPQ9NYB0 399 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 ERBINQ96RT1 1412 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 CAMSAP2Q08AD1 1489 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 CFAP43Q8NDM7 1665 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 BCAR3O75815 825 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 CALD1Q05682 793 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 TPRNQ4KMQ1 711 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 SKAP1Q86WV1 359 aa10.58□□□□□ -0.72
LIMCH1-216ENST00000512820 APBB1O00213 710 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 FRAT2O75474 233 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 CFAP44Q96MT7 982 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 URB2Q14146 1524 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 SNAPC4Q5SXM2 1469 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 MRC2Q9UBG0 1479 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 PTMSP20962 102 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 FOXD4L1Q9NU39 408 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 BRPF3Q9ULD4 1205 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 IFT140Q96RY7 1462 aa10.57□□□□□ -0.72
LIMCH1-216ENST00000512820 DZIP1LQ8IYY4 767 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-216ENST00000512820 C20orf194Q5TEA3 1177 aa10.56□□□□□ -0.72
LIMCH1-216ENST00000512820 MSNP26038 577 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 CFAP70Q5T0N1 1121 aa10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 SYNJ2O15056 1496 aa10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 HAP1P54257 671 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 DNTTIP2Q5QJE6 756 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 THOC2Q8NI27 1593 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 DDX11L8A8MPP1 907 aa10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 PDE3AQ14432 1141 aa10.55□□□□□ -0.72
LIMCH1-216ENST00000512820 RSPH6AQ9H0K4 717 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms