RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 EID1Q9Y6B2 187 aa18.4■□□□□ 0.54
TCOF1-207ENST00000504761 WASHC2AQ641Q2 1341 aa18.4■□□□□ 0.54
TCOF1-207ENST00000504761 CFAP70Q5T0N1 1121 aa18.39■□□□□ 0.53
TCOF1-207ENST00000504761 FTSJ3Q8IY81 847 aaKnown RBP18.39■□□□□ 0.53
TCOF1-207ENST00000504761 PPP4R2Q9NY27 417 aa18.39■□□□□ 0.53
TCOF1-207ENST00000504761 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.36■□□□□ 0.53
TCOF1-207ENST00000504761 UPF2Q9HAU5 1272 aaKnown RBP18.35■□□□□ 0.53
TCOF1-207ENST00000504761 TERF2IPQ9NYB0 399 aa18.35■□□□□ 0.53
TCOF1-207ENST00000504761 CCDC7Q96M83 1385 aa18.35■□□□□ 0.53
TCOF1-207ENST00000504761 ABCC5O15440 1437 aa18.35■□□□□ 0.53
TCOF1-207ENST00000504761 KIAA1107Q9UPP5 1409 aa18.33■□□□□ 0.53
TCOF1-207ENST00000504761 RGS3P49796 1198 aa18.33■□□□□ 0.53
TCOF1-207ENST00000504761 MYH16Q9H6N6 1097 aa18.31■□□□□ 0.52
TCOF1-207ENST00000504761 MAP3K1Q13233 1512 aa18.31■□□□□ 0.52
TCOF1-207ENST00000504761 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
TCOF1-207ENST00000504761 MYBBP1AQ9BQG0 1328 aaKnown RBP18.31■□□□□ 0.52
TCOF1-207ENST00000504761 MYT1Q01538 1121 aa18.31■□□□□ 0.52
TCOF1-207ENST00000504761 THOC2Q8NI27 1593 aaKnown RBP18.3■□□□□ 0.52
TCOF1-207ENST00000504761 NGDNQ8NEJ9 315 aaKnown RBP18.3■□□□□ 0.52
TCOF1-207ENST00000504761 RRP7AQ9Y3A4 280 aaKnown RBP18.3■□□□□ 0.52
TCOF1-207ENST00000504761 RCAN3Q9UKA8 241 aa18.29■□□□□ 0.52
TCOF1-207ENST00000504761 CAMSAP2Q08AD1 1489 aa18.29■□□□□ 0.52
TCOF1-207ENST00000504761 ARXQ96QS3 562 aa18.29■□□□□ 0.52
TCOF1-207ENST00000504761 HSP90AA1P07900 732 aaKnown RBP18.28■□□□□ 0.52
TCOF1-207ENST00000504761 PTPN23Q9H3S7 1636 aa18.28■□□□□ 0.52
TCOF1-207ENST00000504761 EVC2Q86UK5 1308 aa18.27■□□□□ 0.52
TCOF1-207ENST00000504761 PTPRKQ15262 1439 aa18.27■□□□□ 0.51
TCOF1-207ENST00000504761 CENPJQ9HC77 1338 aaPredicted RBP18.27■□□□□ 0.51
TCOF1-207ENST00000504761 WDR97A6NE52 1622 aa18.26■□□□□ 0.51
TCOF1-207ENST00000504761 PNNQ9H307 717 aaKnown RBP18.26■□□□□ 0.51
TCOF1-207ENST00000504761 ROCK1Q13464 1354 aa18.25■□□□□ 0.51
TCOF1-207ENST00000504761 PLEKHH2Q8IVE3 1493 aa18.25■□□□□ 0.51
TCOF1-207ENST00000504761 NCOA1Q15788 1441 aa18.25■□□□□ 0.51
TCOF1-207ENST00000504761 ATP10BO94823 1461 aa18.23■□□□□ 0.51
TCOF1-207ENST00000504761 NBR1Q14596 966 aa18.23■□□□□ 0.51
TCOF1-207ENST00000504761 CABP2Q9NPB3 220 aa18.23■□□□□ 0.51
TCOF1-207ENST00000504761 NUP153P49790 1475 aaKnown RBP18.23■□□□□ 0.51
TCOF1-207ENST00000504761 CCDC141Q6ZP82 1450 aa18.22■□□□□ 0.51
TCOF1-207ENST00000504761 LTV1Q96GA3 475 aaPredicted RBP18.22■□□□□ 0.51
TCOF1-207ENST00000504761 GOLGA2Q08379 1002 aa18.21■□□□□ 0.51
TCOF1-207ENST00000504761 CD109Q6YHK3 1445 aa18.21■□□□□ 0.51
TCOF1-207ENST00000504761 GPATCH8Q9UKJ3 1502 aaKnown RBP18.2■□□□□ 0.5
TCOF1-207ENST00000504761 ANKRD30BQ9BXX2 1392 aa18.2■□□□□ 0.5
TCOF1-207ENST00000504761 CGNL1Q0VF96 1302 aa18.19■□□□□ 0.5
TCOF1-207ENST00000504761 AKNAQ7Z591 1439 aa18.19■□□□□ 0.5
TCOF1-207ENST00000504761 APAF1O14727 1248 aa18.18■□□□□ 0.5
TCOF1-207ENST00000504761 CLUAP1Q96AJ1 413 aa18.18■□□□□ 0.5
TCOF1-207ENST00000504761 RTF1Q92541 710 aaKnown RBP18.18■□□□□ 0.5
TCOF1-207ENST00000504761 STAC3Q96MF2 364 aa18.17■□□□□ 0.5
TCOF1-207ENST00000504761 CNTLNQ9NXG0 1405 aa18.17■□□□□ 0.5
TCOF1-207ENST00000504761 C11orf95C9JLR9 678 aaPredicted RBP18.17■□□□□ 0.5
TCOF1-207ENST00000504761 ADAMTS12P58397 1594 aa18.17■□□□□ 0.5
TCOF1-207ENST00000504761 GGNBP2Q9H3C7 697 aa18.16■□□□□ 0.5
TCOF1-207ENST00000504761 KIF14Q15058 1648 aa18.16■□□□□ 0.5
TCOF1-207ENST00000504761 AMPHP49418 695 aa18.15■□□□□ 0.5
TCOF1-207ENST00000504761 PLIN1O60240 522 aa18.15■□□□□ 0.5
TCOF1-207ENST00000504761 CCDC184Q52MB2 194 aa18.15■□□□□ 0.5
TCOF1-207ENST00000504761 SLC12A5Q9H2X9 1139 aa18.14■□□□□ 0.5
TCOF1-207ENST00000504761 EIF4G3O43432 1585 aaKnown RBP18.14■□□□□ 0.49
TCOF1-207ENST00000504761 BCL2L13Q9BXK5 485 aa18.13■□□□□ 0.49
TCOF1-207ENST00000504761 ADGRL1O94910 1474 aa18.13■□□□□ 0.49
TCOF1-207ENST00000504761 CSB-PGBD3P0DP91 1061 aa18.13■□□□□ 0.49
TCOF1-207ENST00000504761 ELL2O00472 640 aaPredicted RBP18.12■□□□□ 0.49
TCOF1-207ENST00000504761 PRAM1Q96QH2 718 aa18.12■□□□□ 0.49
TCOF1-207ENST00000504761 COG3Q96JB2 828 aa18.12■□□□□ 0.49
TCOF1-207ENST00000504761 RAPGEF6Q8TEU7 1601 aa18.11■□□□□ 0.49
TCOF1-207ENST00000504761 ZBED9Q6R2W3 1325 aa18.11■□□□□ 0.49
TCOF1-207ENST00000504761 TXNDC2Q86VQ3 553 aa18.11■□□□□ 0.49
TCOF1-207ENST00000504761 UGGT2Q9NYU1 1516 aa18.1■□□□□ 0.49
TCOF1-207ENST00000504761 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.1■□□□□ 0.49
TCOF1-207ENST00000504761 WDR62O43379 1518 aa18.09■□□□□ 0.49
TCOF1-207ENST00000504761 CTTNBP2Q8WZ74 1663 aa18.09■□□□□ 0.49
TCOF1-207ENST00000504761 PDE3BQ13370 1112 aa18.09■□□□□ 0.49
TCOF1-207ENST00000504761 SLC52A1Q9NWF4 448 aa18.09■□□□□ 0.49
TCOF1-207ENST00000504761 SMC4Q9NTJ3 1288 aa18.08■□□□□ 0.49
TCOF1-207ENST00000504761 FBXO31Q5XUX0 539 aaPredicted RBP18.08■□□□□ 0.48
TCOF1-207ENST00000504761 MS4A1P11836 297 aa18.08■□□□□ 0.48
TCOF1-207ENST00000504761 SLC26A8Q96RN1 970 aa18.08■□□□□ 0.48
TCOF1-207ENST00000504761 ERBINQ96RT1 1412 aa18.08■□□□□ 0.48
TCOF1-207ENST00000504761 FANCAO15360 1455 aa18.07■□□□□ 0.48
TCOF1-207ENST00000504761 APBB1O00213 710 aa18.07■□□□□ 0.48
TCOF1-207ENST00000504761 ADAMTS8Q9UP79 889 aa18.07■□□□□ 0.48
TCOF1-207ENST00000504761 KIAA0556O60303 1618 aa18.07■□□□□ 0.48
TCOF1-207ENST00000504761 DISP1Q96F81 1524 aa18.06■□□□□ 0.48
TCOF1-207ENST00000504761 ITPRIPQ8IWB1 547 aa18.06■□□□□ 0.48
TCOF1-207ENST00000504761 NUTM2GQ5VZR2 741 aa18.05■□□□□ 0.48
TCOF1-207ENST00000504761 MTHFSP49914 203 aa18.04■□□□□ 0.48
TCOF1-207ENST00000504761 ABCA5Q8WWZ7 1642 aa18.03■□□□□ 0.48
TCOF1-207ENST00000504761 NUP160Q12769 1436 aa18.03■□□□□ 0.48
TCOF1-207ENST00000504761 IDI1Q13907 227 aa18.02■□□□□ 0.48
TCOF1-207ENST00000504761 IPO8O15397 1037 aaKnown RBP18.02■□□□□ 0.47
TCOF1-207ENST00000504761 DIAPH1O60610 1272 aaKnown RBP18.02■□□□□ 0.47
TCOF1-207ENST00000504761 ASXL2Q76L83 1435 aa18.02■□□□□ 0.47
TCOF1-207ENST00000504761 ADGRF5Q8IZF2 1346 aa18.02■□□□□ 0.47
TCOF1-207ENST00000504761 HMOX1P09601 288 aa18.02■□□□□ 0.47
TCOF1-207ENST00000504761 RBM19Q9Y4C8 960 aaKnown RBP18.01■□□□□ 0.47
TCOF1-207ENST00000504761 CALD1Q05682 793 aaKnown RBP18.01■□□□□ 0.47
TCOF1-207ENST00000504761 PPP2R1AP30153 589 aa18.01■□□□□ 0.47
TCOF1-207ENST00000504761 CDCA7LQ96GN5 454 aa18.01■□□□□ 0.47
TCOF1-207ENST00000504761 EXOC6Q8TAG9 804 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms