RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MAGI1Q96QZ7 1491 aaPredicted RBP14.16□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 CCDC146Q8IYE0 955 aa14.16□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 C14orf37Q86TY3 774 aa14.15□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 MIA2Q96PC5 1412 aa14.15□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 EIF4G3O43432 1585 aaKnown RBP14.15□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 CFAP70Q5T0N1 1121 aa14.15□□□□□ -0.14
MSH5-SAPCD1-207ENST00000493662 MAGI3Q5TCQ9 1506 aa14.14□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 CAMSAP2Q08AD1 1489 aa14.14□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 ATP10BO94823 1461 aa14.14□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 CCDC7Q96M83 1385 aa14.13□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 U2SURPO15042 1029 aaKnown RBP14.12□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 ADAMTS12P58397 1594 aa14.12□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 DISP1Q96F81 1524 aa14.12□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 NCOA1Q15788 1441 aa14.12□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 GPATCH8Q9UKJ3 1502 aaKnown RBP14.11□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 ABCA5Q8WWZ7 1642 aa14.11□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 CTTNBP2Q8WZ74 1663 aa14.11□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 MAP3K1Q13233 1512 aa14.1□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 ANKRD30BQ9BXX2 1392 aa14.1□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 TARBP1Q13395 1621 aaKnown RBP14.09□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 ARXQ96QS3 562 aa14.09□□□□□ -0.15
MSH5-SAPCD1-207ENST00000493662 MSH5O43196 834 aa14.08□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 RRP7AQ9Y3A4 280 aaKnown RBP14.08□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 KIAA1107Q9UPP5 1409 aa14.07□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.07□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 PLIN1O60240 522 aa14.07□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 UGGT2Q9NYU1 1516 aa14.06□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 FRAT1Q92837 279 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 MINK1Q8N4C8 1332 aaPredicted RBP14.06□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 MORC1Q86VD1 984 aa14.06□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 KTN1Q86UP2 1357 aaKnown RBP14.05□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 LMOD2Q6P5Q4 547 aa14.05□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 PLEKHH2Q8IVE3 1493 aa14.05□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 CDCA8Q53HL2 280 aa14.05□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.05□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 IL27Q8NEV9 243 aa14.05□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 KIAA0556O60303 1618 aa14.04□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 WDR62O43379 1518 aa14.03□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 AKNAQ7Z591 1439 aa14.03□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 RAPGEF6Q8TEU7 1601 aa14.03□□□□□ -0.16
MSH5-SAPCD1-207ENST00000493662 PBRM1Q86U86 1689 aa14.02□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 IPO9Q96P70 1041 aaKnown RBP14.01□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 NAP1L5Q96NT1 182 aaPredicted RBP14.01□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 CEP170Q5SW79 1584 aa14.01□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 CDCA7LQ96GN5 454 aa13.99□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 CABP2Q9NPB3 220 aa13.99□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 NLRP13Q86W25 1043 aa13.99□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 U2AF1L5P0DN76 240 aaPredicted RBP13.98□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 U2AF1Q01081 240 aaKnown RBP eCLIP13.98□□□□□ -0.172e-10■■■□□ 15.8
MSH5-SAPCD1-207ENST00000493662 ROCK1Q13464 1354 aa13.98□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 RGS3P49796 1198 aa13.98□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 FBXO31Q5XUX0 539 aaPredicted RBP13.98□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 BCL2L13Q9BXK5 485 aa13.97□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 SLC12A5Q9H2X9 1139 aa13.97□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 CNTLNQ9NXG0 1405 aa13.97□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 CFAP43Q8NDM7 1665 aa13.97□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 DDRGK1Q96HY6 314 aa13.97□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 KIF14Q15058 1648 aa13.96□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 CCDC141Q6ZP82 1450 aa13.96□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 VSIG10Q8N0Z9 540 aa13.96□□□□□ -0.17
MSH5-SAPCD1-207ENST00000493662 PKNOX2Q96KN3 472 aa13.96□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 TRAPPC8Q9Y2L5 1435 aa13.95□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 RALBP1Q15311 655 aa13.95□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 NUP160Q12769 1436 aa13.95□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 KDM6BO15054 1643 aa13.95□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 SAMD9Q5K651 1589 aa13.95□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 APAF1O14727 1248 aa13.94□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 CLUAP1Q96AJ1 413 aa13.94□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 ADGRF5Q8IZF2 1346 aa13.94□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 MYBBP1AQ9BQG0 1328 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 CFAP53Q96M91 514 aa13.93□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 RCAN3Q9UKA8 241 aa13.93□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 GGNBP2Q9H3C7 697 aa13.93□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 SYCP2Q9BX26 1530 aa13.93□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 ADAMTS8Q9UP79 889 aa13.92□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 CD109Q6YHK3 1445 aa13.91□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 RPRD2Q5VT52 1461 aaKnown RBP13.91□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 NUDCQ9Y266 331 aa13.91□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 ERCC6L2Q5T890 1561 aa13.91□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 PAK3O75914 559 aaPredicted RBP13.9□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 UBE2Q2Q8WVN8 375 aa13.9□□□□□ -0.18
MSH5-SAPCD1-207ENST00000493662 RSPH6AQ9H0K4 717 aa13.9□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 CEBPAP49715 358 aaPredicted RBP13.89□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 ELL2O00472 640 aaPredicted RBP13.89□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 VGFO15240 615 aaPredicted RBP13.89□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 RBM33Q96EV2 1170 aaKnown RBP13.89□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 ADGRL1O94910 1474 aa13.89□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 EXOC6Q8TAG9 804 aa13.89□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 CENPJQ9HC77 1338 aaPredicted RBP13.88□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 MAPK8IP3Q9UPT6 1336 aa13.88□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 FANCAO15360 1455 aa13.88□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 TCERG1O14776 1098 aaKnown RBP13.88□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 FBLN1P23142 703 aa13.87□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 USP35Q9P2H5 1018 aa13.87□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 ASXL2Q76L83 1435 aa13.86□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 A0A0G2JS52 829 aa13.86□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 IDI1Q13907 227 aa13.86□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 SLC26A8Q96RN1 970 aa13.86□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 TXNDC2Q86VQ3 553 aa13.86□□□□□ -0.19
MSH5-SAPCD1-207ENST00000493662 PNISRQ8TF01 805 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms