RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 GRIN2BQ13224 1484 aa15.16■□□□□ 0.02
PRPF3-206ENST00000493553 HOXB1P14653 301 aaPredicted RBP15.16■□□□□ 0.02
PRPF3-206ENST00000493553 RANGAP1P46060 587 aaPredicted RBP15.15■□□□□ 0.02
PRPF3-206ENST00000493553 PPARGC1BQ86YN6 1023 aaKnown RBP15.15■□□□□ 0.02
PRPF3-206ENST00000493553 MARVELD3Q96A59 401 aa15.15■□□□□ 0.02
PRPF3-206ENST00000493553 FOXK1P85037 733 aa15.13■□□□□ 0.01
PRPF3-206ENST00000493553 CRISPLD2Q9H0B8 497 aa15.13■□□□□ 0.01
PRPF3-206ENST00000493553 EMP3P54852 163 aa15.12■□□□□ 0.01
PRPF3-206ENST00000493553 SPRYD3Q8NCJ5 442 aa15.12■□□□□ 0.01
PRPF3-206ENST00000493553 PCDH10Q9P2E7 1040 aa15.12■□□□□ 0.01
PRPF3-206ENST00000493553 SLC34A2O95436 690 aa15.11■□□□□ 0.01
PRPF3-206ENST00000493553 AQRO60306 1485 aaKnown RBP eCLIP15.11■□□□□ 0.015e-6■□□□□ 10.8
PRPF3-206ENST00000493553 FMN1Q68DA7 1419 aa15.1■□□□□ 0.01
PRPF3-206ENST00000493553 GPR153Q6NV75 609 aa15.09■□□□□ 0.01
PRPF3-206ENST00000493553 DSG2Q14126 1118 aa15.08■□□□□ 0
PRPF3-206ENST00000493553 NCKAP5LQ9HCH0 1330 aa15.08■□□□□ 0
PRPF3-206ENST00000493553 CTTNBP2Q8WZ74 1663 aa15.07■□□□□ 0
PRPF3-206ENST00000493553 PDE4AP27815 886 aa15.07■□□□□ 0
PRPF3-206ENST00000493553 PLPP6Q8IY26 295 aa15.06■□□□□ 0
PRPF3-206ENST00000493553 FYCO1Q9BQS8 1478 aa15.06■□□□□ 0
PRPF3-206ENST00000493553 CASKIN1Q8WXD9 1431 aa15.04■□□□□ -0
PRPF3-206ENST00000493553 ADAMTS12P58397 1594 aa15.03■□□□□ -0
PRPF3-206ENST00000493553 ARSIQ5FYB1 569 aa15.03■□□□□ -0
PRPF3-206ENST00000493553 MAGI1Q96QZ7 1491 aaPredicted RBP15.02■□□□□ -0
PRPF3-206ENST00000493553 PAXIP1Q6ZW49 1069 aaPredicted RBP15.02■□□□□ -0
PRPF3-206ENST00000493553 CADPS2Q86UW7 1296 aa15.02■□□□□ -0
PRPF3-206ENST00000493553 PBRM1Q86U86 1689 aa15.02□□□□□ -0.01
PRPF3-206ENST00000493553 THOC2Q8NI27 1593 aaKnown RBP15.02□□□□□ -0.01
PRPF3-206ENST00000493553 CCER1Q8TC90 406 aaPredicted RBP15.01□□□□□ -0.01
PRPF3-206ENST00000493553 TTBK1Q5TCY1 1321 aaPredicted RBP15□□□□□ -0.01
PRPF3-206ENST00000493553 FAM205CA6NFA0 338 aa15□□□□□ -0.01
PRPF3-206ENST00000493553 PPP1R15BQ5SWA1 713 aa15□□□□□ -0.01
PRPF3-206ENST00000493553 CDAN1Q8IWY9 1227 aa15□□□□□ -0.01
PRPF3-206ENST00000493553 PCDHGA4Q9Y5G9 962 aa15□□□□□ -0.01
PRPF3-206ENST00000493553 TIAM1Q13009 1591 aa14.99□□□□□ -0.01
PRPF3-206ENST00000493553 PTCD2Q8WV60 388 aaKnown RBP14.99□□□□□ -0.01
PRPF3-206ENST00000493553 CFAP44Q96MT7 982 aa14.99□□□□□ -0.01
PRPF3-206ENST00000493553 HS3ST6Q96QI5 342 aa14.99□□□□□ -0.01
PRPF3-206ENST00000493553 SAMD9Q5K651 1589 aa14.98□□□□□ -0.01
PRPF3-206ENST00000493553 MFSD10Q14728 455 aa14.98□□□□□ -0.01
PRPF3-206ENST00000493553 LARP6Q9BRS8 491 aaKnown RBP14.98□□□□□ -0.01
PRPF3-206ENST00000493553 RRBP1Q9P2E9 1410 aaKnown RBP14.98□□□□□ -0.01
PRPF3-206ENST00000493553 KIAA0586Q9BVV6 1533 aa14.97□□□□□ -0.01
PRPF3-206ENST00000493553 ERBB3P21860 1342 aa14.96□□□□□ -0.01
PRPF3-206ENST00000493553 POTEB3A0JP26 581 aa14.96□□□□□ -0.01
PRPF3-206ENST00000493553 IQGAP2Q13576 1575 aa14.96□□□□□ -0.01
PRPF3-206ENST00000493553 FHOD3Q2V2M9 1422 aa14.96□□□□□ -0.01
PRPF3-206ENST00000493553 POTEBQ6S5H4 581 aa14.96□□□□□ -0.01
PRPF3-206ENST00000493553 KHSRPQ92945 711 aaKnown RBP eCLIP14.96□□□□□ -0.01
PRPF3-206ENST00000493553 DDX27Q96GQ7 796 aaKnown RBP14.96□□□□□ -0.01
PRPF3-206ENST00000493553 LRRC9Q6ZRR7 1453 aa14.95□□□□□ -0.02
PRPF3-206ENST00000493553 ZNF608Q9ULD9 1512 aaPredicted RBP14.95□□□□□ -0.02
PRPF3-206ENST00000493553 KANK4Q5T7N3 995 aaPredicted RBP14.94□□□□□ -0.02
PRPF3-206ENST00000493553 CCNB3Q8WWL7 1395 aa14.94□□□□□ -0.02
PRPF3-206ENST00000493553 UGGT2Q9NYU1 1516 aa14.93□□□□□ -0.02
PRPF3-206ENST00000493553 SYNJ2O15056 1496 aa14.93□□□□□ -0.02
PRPF3-206ENST00000493553 EIF4G3O43432 1585 aaKnown RBP14.93□□□□□ -0.02
PRPF3-206ENST00000493553 GRIN2AQ12879 1464 aa14.92□□□□□ -0.02
PRPF3-206ENST00000493553 SNAPC4Q5SXM2 1469 aa14.92□□□□□ -0.02
PRPF3-206ENST00000493553 CFAP43Q8NDM7 1665 aa14.91□□□□□ -0.02
PRPF3-206ENST00000493553 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.91□□□□□ -0.02
PRPF3-206ENST00000493553 P3H3Q8IVL6 736 aa14.91□□□□□ -0.02
PRPF3-206ENST00000493553 CHMP7Q8WUX9 453 aaPredicted RBP14.91□□□□□ -0.02
PRPF3-206ENST00000493553 CLSPNQ9HAW4 1339 aa14.91□□□□□ -0.02
PRPF3-206ENST00000493553 PCF11O94913 1555 aaKnown RBP14.9□□□□□ -0.02
PRPF3-206ENST00000493553 CCDC18Q5T9S5 1454 aa14.9□□□□□ -0.02
PRPF3-206ENST00000493553 NUDT7P0C024 238 aa14.9□□□□□ -0.02
PRPF3-206ENST00000493553 VARS2Q5ST30 1063 aaKnown RBP14.9□□□□□ -0.02
PRPF3-206ENST00000493553 TBC1D12O60347 775 aa14.89□□□□□ -0.03
PRPF3-206ENST00000493553 OXER1Q8TDS5 423 aa14.89□□□□□ -0.03
PRPF3-206ENST00000493553 KDM4FA0A1W2PPD8 638 aa14.88□□□□□ -0.03
PRPF3-206ENST00000493553 ZNF316A6NFI3 1004 aaPredicted RBP14.88□□□□□ -0.03
PRPF3-206ENST00000493553 ATP1B4Q9UN42 357 aaPredicted RBP14.88□□□□□ -0.03
PRPF3-206ENST00000493553 MTUS2Q5JR59 1369 aa14.85□□□□□ -0.03
PRPF3-206ENST00000493553 CARMIL2Q6F5E8 1435 aa14.84□□□□□ -0.03
PRPF3-206ENST00000493553 NUP160Q12769 1436 aa14.83□□□□□ -0.04
PRPF3-206ENST00000493553 HECW1Q76N89 1606 aa14.82□□□□□ -0.04
PRPF3-206ENST00000493553 UPF1Q92900 1129 aaKnown RBP eCLIP14.82□□□□□ -0.04
PRPF3-206ENST00000493553 LHX6Q9UPM6 363 aa14.82□□□□□ -0.04
PRPF3-206ENST00000493553 ZNF687Q8N1G0 1237 aa14.81□□□□□ -0.04
PRPF3-206ENST00000493553 CDK11AQ9UQ88 783 aaPredicted RBP14.81□□□□□ -0.04
PRPF3-206ENST00000493553 EHBP1L1Q8N3D4 1523 aa14.8□□□□□ -0.04
PRPF3-206ENST00000493553 KRTAP3-3Q9BYR6 98 aa14.79□□□□□ -0.04
PRPF3-206ENST00000493553 KRTAP3-2Q9BYR7 98 aa14.79□□□□□ -0.04
PRPF3-206ENST00000493553 ACIN1Q9UKV3 1341 aaKnown RBP14.78□□□□□ -0.04
PRPF3-206ENST00000493553 CAMK2BQ13554 666 aa14.78□□□□□ -0.04
PRPF3-206ENST00000493553 PHLDB1Q86UU1 1377 aa14.77□□□□□ -0.04
PRPF3-206ENST00000493553 PSDA5PKW4 1024 aaPredicted RBP14.77□□□□□ -0.05
PRPF3-206ENST00000493553 EMILIN3Q9NT22 766 aa14.77□□□□□ -0.05
PRPF3-206ENST00000493553 KIAA0556O60303 1618 aa14.76□□□□□ -0.05
PRPF3-206ENST00000493553 DISP1Q96F81 1524 aa14.76□□□□□ -0.05
PRPF3-206ENST00000493553 JPH4Q96JJ6 628 aa14.74□□□□□ -0.05
PRPF3-206ENST00000493553 EPRSP07814 1512 aaKnown RBP14.74□□□□□ -0.05
PRPF3-206ENST00000493553 MYOM3Q5VTT5 1437 aa14.73□□□□□ -0.05
PRPF3-206ENST00000493553 FGD6Q6ZV73 1430 aa14.73□□□□□ -0.05
PRPF3-206ENST00000493553 SUPT6HQ7KZ85 1726 aaKnown RBP14.72□□□□□ -0.05
PRPF3-206ENST00000493553 FAM50AQ14320 339 aaKnown RBP14.72□□□□□ -0.05
PRPF3-206ENST00000493553 NCOA2Q15596 1464 aa14.71□□□□□ -0.05
PRPF3-206ENST00000493553 MAP3K9P80192 1104 aa14.71□□□□□ -0.05
PRPF3-206ENST00000493553 PLSCR2Q9NRY7 297 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms