RNA–Protein interactions for RNA: ENST00000492386.5

SEMA4D-220, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 2,396 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-220ENST00000492386 PNISRQ8TF01 805 aaKnown RBP21.92■■□□□ 1.1
SEMA4D-220ENST00000492386 CHD1O14646 1710 aa21.92■■□□□ 1.1
SEMA4D-220ENST00000492386 SYCP2Q9BX26 1530 aa21.92■■□□□ 1.1
SEMA4D-220ENST00000492386 TTC37Q6PGP7 1564 aa21.92■■□□□ 1.1
SEMA4D-220ENST00000492386 TRPM1Q7Z4N2 1603 aa21.92■■□□□ 1.1
SEMA4D-220ENST00000492386 FANCIQ9NVI1 1328 aa21.9■■□□□ 1.1
SEMA4D-220ENST00000492386 B4GALNT3Q6L9W6 998 aa21.89■■□□□ 1.1
SEMA4D-220ENST00000492386 SHROOM2Q13796 1616 aa21.89■■□□□ 1.09
SEMA4D-220ENST00000492386 NUDCQ9Y266 331 aa21.89■■□□□ 1.09
SEMA4D-220ENST00000492386 MSH5O43196 834 aa21.88■■□□□ 1.09
SEMA4D-220ENST00000492386 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.88■■□□□ 1.09
SEMA4D-220ENST00000492386 PRAG1Q86YV5 1406 aa21.88■■□□□ 1.09
SEMA4D-220ENST00000492386 ARHGAP5Q13017 1502 aa21.87■■□□□ 1.09
SEMA4D-220ENST00000492386 RNF123Q5XPI4 1314 aa21.87■■□□□ 1.09
SEMA4D-220ENST00000492386 CCDC144AA2RUR9 1427 aa21.86■■□□□ 1.09
SEMA4D-220ENST00000492386 KTN1Q86UP2 1357 aaKnown RBP21.86■■□□□ 1.09
SEMA4D-220ENST00000492386 PLA2R1Q13018 1463 aa21.86■■□□□ 1.09
SEMA4D-220ENST00000492386 TMC1Q8TDI8 760 aa21.85■■□□□ 1.09
SEMA4D-220ENST00000492386 LRPPRCP42704 1394 aaKnown RBP21.85■■□□□ 1.09
SEMA4D-220ENST00000492386 PLXNC1O60486 1568 aa21.85■■□□□ 1.09
SEMA4D-220ENST00000492386 MYO5CQ9NQX4 1742 aa21.84■■□□□ 1.09
SEMA4D-220ENST00000492386 IQGAP3Q86VI3 1631 aa21.84■■□□□ 1.09
SEMA4D-220ENST00000492386 BRD4O60885 1362 aaPredicted RBP21.83■■□□□ 1.09
SEMA4D-220ENST00000492386 MYBBP1AQ9BQG0 1328 aaKnown RBP21.83■■□□□ 1.08
SEMA4D-220ENST00000492386 RALBP1Q15311 655 aa21.82■■□□□ 1.08
SEMA4D-220ENST00000492386 A2MP01023 1474 aa21.81■■□□□ 1.08
SEMA4D-220ENST00000492386 LAMC1P11047 1609 aa21.81■■□□□ 1.08
SEMA4D-220ENST00000492386 GPRASP1Q5JY77 1395 aa21.8■■□□□ 1.08
SEMA4D-220ENST00000492386 ABCC2Q92887 1545 aa21.8■■□□□ 1.08
SEMA4D-220ENST00000492386 PLEKHH2Q8IVE3 1493 aa21.79■■□□□ 1.08
SEMA4D-220ENST00000492386 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
SEMA4D-220ENST00000492386 NBPF1Q3BBV0 1214 aa21.77■■□□□ 1.08
SEMA4D-220ENST00000492386 PRDM15P57071 1507 aaPredicted RBP21.77■■□□□ 1.08
SEMA4D-220ENST00000492386 MAGI2Q86UL8 1455 aa21.76■■□□□ 1.07
SEMA4D-220ENST00000492386 SENP3-EIF4A1A0A087X0R7 540 aa21.76■■□□□ 1.07
SEMA4D-220ENST00000492386 RGL3Q3MIN7 710 aa21.76■■□□□ 1.07
SEMA4D-220ENST00000492386 DUOX2Q9NRD8 1548 aa21.76■■□□□ 1.07
SEMA4D-220ENST00000492386 PARD3Q8TEW0 1356 aa21.75■■□□□ 1.07
SEMA4D-220ENST00000492386 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.75■■□□□ 1.07
SEMA4D-220ENST00000492386 ATP10AO60312 1499 aa21.75■■□□□ 1.07
SEMA4D-220ENST00000492386 COL17A1Q9UMD9 1497 aaPredicted RBP21.74■■□□□ 1.07
SEMA4D-220ENST00000492386 EIF2AK4Q9P2K8 1649 aaKnown RBP21.73■■□□□ 1.07
SEMA4D-220ENST00000492386 ERBINQ96RT1 1412 aa21.72■■□□□ 1.07
SEMA4D-220ENST00000492386 PER1O15534 1290 aaPredicted RBP21.72■■□□□ 1.07
SEMA4D-220ENST00000492386 NLRP13Q86W25 1043 aa21.7■■□□□ 1.06
SEMA4D-220ENST00000492386 TESK2Q96S53 571 aa21.7■■□□□ 1.06
SEMA4D-220ENST00000492386 DISP3Q9P2K9 1392 aa21.68■■□□□ 1.06
SEMA4D-220ENST00000492386 PLCH2O75038 1416 aa21.68■■□□□ 1.06
SEMA4D-220ENST00000492386 ZCCHC11Q5TAX3 1644 aaKnown RBP21.68■■□□□ 1.06
SEMA4D-220ENST00000492386 RNF17Q9BXT8 1623 aaKnown RBP21.67■■□□□ 1.06
SEMA4D-220ENST00000492386 CCDC136Q96JN2 1154 aa21.66■■□□□ 1.06
SEMA4D-220ENST00000492386 ABCC1P33527 1531 aa21.66■■□□□ 1.06
SEMA4D-220ENST00000492386 WASHC2CQ9Y4E1 1318 aa21.64■■□□□ 1.05
SEMA4D-220ENST00000492386 TRAPPC8Q9Y2L5 1435 aa21.61■■□□□ 1.05
SEMA4D-220ENST00000492386 EFCAB2Q5VUJ9 269 aa21.61■■□□□ 1.05
SEMA4D-220ENST00000492386 UHRF1BP1LA0JNW5 1464 aa21.61■■□□□ 1.05
SEMA4D-220ENST00000492386 RRP1P56182 461 aaKnown RBP21.59■■□□□ 1.05
SEMA4D-220ENST00000492386 PANK3Q9H999 370 aa21.59■■□□□ 1.05
SEMA4D-220ENST00000492386 MADDQ8WXG6 1647 aa21.58■■□□□ 1.05
SEMA4D-220ENST00000492386 PDE3BQ13370 1112 aa21.58■■□□□ 1.05
SEMA4D-220ENST00000492386 ZMYM4Q5VZL5 1548 aa21.58■■□□□ 1.05
SEMA4D-220ENST00000492386 TMF1P82094 1093 aa21.58■■□□□ 1.04
SEMA4D-220ENST00000492386 ERICH6Q7L0X2 663 aa21.58■■□□□ 1.04
SEMA4D-220ENST00000492386 CLASP1Q7Z460 1538 aa21.58■■□□□ 1.04
SEMA4D-220ENST00000492386 INSRP06213 1382 aa21.57■■□□□ 1.04
SEMA4D-220ENST00000492386 BLMP54132 1417 aaPredicted RBP21.57■■□□□ 1.04
SEMA4D-220ENST00000492386 CC2D1BQ5T0F9 858 aaKnown RBP21.56■■□□□ 1.04
SEMA4D-220ENST00000492386 IQGAP1P46940 1657 aa21.56■■□□□ 1.04
SEMA4D-220ENST00000492386 RCAN3Q9UKA8 241 aa21.56■■□□□ 1.04
SEMA4D-220ENST00000492386 TRPM2O94759 1503 aa21.54■■□□□ 1.04
SEMA4D-220ENST00000492386 SALL2Q9Y467 1007 aaPredicted RBP21.54■■□□□ 1.04
SEMA4D-220ENST00000492386 CEP152O94986 1710 aa21.54■■□□□ 1.04
SEMA4D-220ENST00000492386 SPHKAPQ2M3C7 1700 aa21.54■■□□□ 1.04
SEMA4D-220ENST00000492386 ZFYVE16Q7Z3T8 1539 aa21.54■■□□□ 1.04
SEMA4D-220ENST00000492386 ARAP3Q8WWN8 1544 aa21.52■■□□□ 1.04
SEMA4D-220ENST00000492386 DEPDC5O75140 1603 aa21.52■■□□□ 1.04
SEMA4D-220ENST00000492386 RTEL1-TNFRSF6BF6WH68 1400 aa21.52■■□□□ 1.04
SEMA4D-220ENST00000492386 WDR7Q9Y4E6 1490 aa21.51■■□□□ 1.03
SEMA4D-220ENST00000492386 EXOC6Q8TAG9 804 aa21.5■■□□□ 1.03
SEMA4D-220ENST00000492386 SPAG9O60271 1321 aaKnown RBP21.5■■□□□ 1.03
SEMA4D-220ENST00000492386 CDCA7LQ96GN5 454 aa21.5■■□□□ 1.03
SEMA4D-220ENST00000492386 PTPRTO14522 1441 aa21.49■■□□□ 1.03
SEMA4D-220ENST00000492386 CLTCL1P53675 1640 aa21.49■■□□□ 1.03
SEMA4D-220ENST00000492386 TET3O43151 1660 aa21.47■■□□□ 1.03
SEMA4D-220ENST00000492386 AFAP1Q8N556 730 aa21.47■■□□□ 1.03
SEMA4D-220ENST00000492386 SCAPERQ9BY12 1400 aa21.46■■□□□ 1.03
SEMA4D-220ENST00000492386 SCAF11Q99590 1463 aaKnown RBP21.44■■□□□ 1.02
SEMA4D-220ENST00000492386 SYNMO15061 1565 aa21.44■■□□□ 1.02
SEMA4D-220ENST00000492386 VWDEQ8N2E2 1590 aa21.44■■□□□ 1.02
SEMA4D-220ENST00000492386 INO80Q9ULG1 1556 aaPredicted RBP21.43■■□□□ 1.02
SEMA4D-220ENST00000492386 NOP58Q9Y2X3 529 aaKnown RBP21.43■■□□□ 1.02
SEMA4D-220ENST00000492386 STAC3Q96MF2 364 aa21.43■■□□□ 1.02
SEMA4D-220ENST00000492386 ABCA9Q8IUA7 1624 aa21.42■■□□□ 1.02
SEMA4D-220ENST00000492386 ATP7AQ04656 1500 aa21.41■■□□□ 1.02
SEMA4D-220ENST00000492386 MYOM1P52179 1685 aa21.41■■□□□ 1.02
SEMA4D-220ENST00000492386 KIAA1210Q9ULL0 1709 aa21.41■■□□□ 1.02
SEMA4D-220ENST00000492386 AMER1Q5JTC6 1135 aaPredicted RBP21.39■■□□□ 1.02
SEMA4D-220ENST00000492386 ADAMTS8Q9UP79 889 aa21.39■■□□□ 1.02
SEMA4D-220ENST00000492386 KNSTRNQ9Y448 316 aa21.39■■□□□ 1.02
SEMA4D-220ENST00000492386 PPP2R1AP30153 589 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms