RNA–Protein interactions for RNA: ENST00000473961.5

BRCA1-212, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 958 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-212ENST00000473961 RYDENQ9NUL5 291 aaKnown RBP9.18□□□□□ -0.94
BRCA1-212ENST00000473961 NRG2O14511 850 aaPredicted RBP9.17□□□□□ -0.94
BRCA1-212ENST00000473961 ZNF787Q6DD87 383 aa9.17□□□□□ -0.94
BRCA1-212ENST00000473961 NBR1Q14596 966 aa9.16□□□□□ -0.94
BRCA1-212ENST00000473961 NYAP1Q6ZVC0 841 aa9.15□□□□□ -0.94
BRCA1-212ENST00000473961 SOWAHBA6NEL2 793 aa9.14□□□□□ -0.95
BRCA1-212ENST00000473961 UPF1Q92900 1129 aaKnown RBP eCLIP9.14□□□□□ -0.95
BRCA1-212ENST00000473961 ADAM33Q9BZ11 813 aa9.14□□□□□ -0.95
BRCA1-212ENST00000473961 JPH4Q96JJ6 628 aa9.12□□□□□ -0.95
BRCA1-212ENST00000473961 WBP1LQ9NX94 342 aa9.12□□□□□ -0.95
BRCA1-212ENST00000473961 RABGEF1Q9UJ41 708 aa9.12□□□□□ -0.95
BRCA1-212ENST00000473961 TPRNQ4KMQ1 711 aa9.11□□□□□ -0.95
BRCA1-212ENST00000473961 PROX2Q3B8N5 592 aa9.1□□□□□ -0.95
BRCA1-212ENST00000473961 ZDHHC16Q969W1 377 aa9.1□□□□□ -0.95
BRCA1-212ENST00000473961 PRKCSHP14314 528 aaPredicted RBP9.09□□□□□ -0.95
BRCA1-212ENST00000473961 PRKD2Q9BZL6 878 aa9.08□□□□□ -0.96
BRCA1-212ENST00000473961 PPP1R3GB7ZBB8 358 aa9.06□□□□□ -0.96
BRCA1-212ENST00000473961 LAPTM4BQ86VI4 370 aa9.06□□□□□ -0.96
BRCA1-212ENST00000473961 ZFRQ96KR1 1074 aaKnown RBP9.06□□□□□ -0.96
BRCA1-212ENST00000473961 ANO8Q9HCE9 1232 aaPredicted RBP9.06□□□□□ -0.96
BRCA1-212ENST00000473961 GTPBP6O43824 516 aaPredicted RBP9.04□□□□□ -0.96
BRCA1-212ENST00000473961 COL9A1P20849 921 aa9.03□□□□□ -0.96
BRCA1-212ENST00000473961 NKX1-1Q15270 411 aaPredicted RBP9.02□□□□□ -0.97
BRCA1-212ENST00000473961 V9GY48 417 aaPredicted RBP9.01□□□□□ -0.97
BRCA1-212ENST00000473961 EVI5O60447 810 aa9□□□□□ -0.97
BRCA1-212ENST00000473961 KIAA1468Q9P260 1216 aa8.98□□□□□ -0.97
BRCA1-212ENST00000473961 TSR3Q9UJK0 312 aaKnown RBP8.98□□□□□ -0.97
BRCA1-212ENST00000473961 PDZRN3Q9UPQ7 1066 aa8.98□□□□□ -0.97
BRCA1-212ENST00000473961 P3H3Q8IVL6 736 aa8.97□□□□□ -0.97
BRCA1-212ENST00000473961 SEPT9Q9UHD8 586 aaPredicted RBP8.97□□□□□ -0.97
BRCA1-212ENST00000473961 HPS5Q9UPZ3 1129 aa8.97□□□□□ -0.97
BRCA1-212ENST00000473961 PPP1R15BQ5SWA1 713 aa8.96□□□□□ -0.98
BRCA1-212ENST00000473961 TJAP1Q5JTD0 557 aa8.95□□□□□ -0.98
BRCA1-212ENST00000473961 CRISPLD2Q9H0B8 497 aa8.95□□□□□ -0.98
BRCA1-212ENST00000473961 PPP1R18Q6NYC8 613 aa8.94□□□□□ -0.98
BRCA1-212ENST00000473961 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.94□□□□□ -0.98
BRCA1-212ENST00000473961 PCDHGA10Q9Y5H3 936 aa8.94□□□□□ -0.98
BRCA1-212ENST00000473961 ONECUT3O60422 494 aaPredicted RBP8.92□□□□□ -0.98
BRCA1-212ENST00000473961 LCE2AQ5TA79 106 aaPredicted RBP8.92□□□□□ -0.98
BRCA1-212ENST00000473961 LRCH3Q96II8 777 aa8.92□□□□□ -0.98
BRCA1-212ENST00000473961 FAM98CQ17RN3 349 aaKnown RBP8.91□□□□□ -0.98
BRCA1-212ENST00000473961 WDR70Q9NW82 654 aa8.91□□□□□ -0.98
BRCA1-212ENST00000473961 POTECB2RU33 542 aa8.9□□□□□ -0.98
BRCA1-212ENST00000473961 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.88□□□□□ -0.99
BRCA1-212ENST00000473961 TRIM6-TRIM34B2RNG4 842 aa8.86□□□□□ -0.99
BRCA1-212ENST00000473961 TREML4Q6UXN2 200 aa8.86□□□□□ -0.99
BRCA1-212ENST00000473961 MTRQ99707 1265 aa8.86□□□□□ -0.99
BRCA1-212ENST00000473961 TYW1BQ6NUM6 668 aa8.85□□□□□ -0.99
BRCA1-212ENST00000473961 FBXW7Q969H0 707 aa8.85□□□□□ -0.99
BRCA1-212ENST00000473961 IL21Q9HBE4 155 aa8.85□□□□□ -0.99
BRCA1-212ENST00000473961 NCKAP5LQ9HCH0 1330 aa8.84□□□□□ -0.99
BRCA1-212ENST00000473961 LOC100996750A0A140TA64 210 aa8.84□□□□□ -0.99
BRCA1-212ENST00000473961 TULP1O00294 542 aaPredicted RBP8.84□□□□□ -0.99
BRCA1-212ENST00000473961 MYT1Q01538 1121 aa8.84□□□□□ -0.99
BRCA1-212ENST00000473961 TRIM67Q6ZTA4 783 aa8.84□□□□□ -0.99
BRCA1-212ENST00000473961 KRTAP4-6Q9BYQ5 205 aa8.84□□□□□ -0.99
BRCA1-212ENST00000473961 PHF14O94880 888 aa8.82□□□□□ -1
BRCA1-212ENST00000473961 PPP4CP60510 307 aa8.82□□□□□ -1
BRCA1-212ENST00000473961 ZNF516Q92618 1163 aa8.82□□□□□ -1
BRCA1-212ENST00000473961 MAP3K9P80192 1104 aa8.81□□□□□ -1
BRCA1-212ENST00000473961 C6orf132Q5T0Z8 1188 aa8.79□□□□□ -1
BRCA1-212ENST00000473961 DGAT1O75907 488 aa8.77□□□□□ -1.01
BRCA1-212ENST00000473961 PKDCCQ504Y2 493 aa8.77□□□□□ -1.01
BRCA1-212ENST00000473961 NKX2-3Q8TAU0 364 aa8.77□□□□□ -1.01
BRCA1-212ENST00000473961 EMILIN3Q9NT22 766 aa8.77□□□□□ -1.01
BRCA1-212ENST00000473961 PDE4AP27815 886 aa8.76□□□□□ -1.01
BRCA1-212ENST00000473961 STK17AQ9UEE5 414 aa8.75□□□□□ -1.01
BRCA1-212ENST00000473961 SAMD7Q7Z3H4 446 aa8.74□□□□□ -1.01
BRCA1-212ENST00000473961 KCNV2Q8TDN2 545 aa8.73□□□□□ -1.01
BRCA1-212ENST00000473961 TSKSQ9UJT2 592 aa8.73□□□□□ -1.01
BRCA1-212ENST00000473961 EMID1Q96A84 441 aaPredicted RBP8.72□□□□□ -1.01
BRCA1-212ENST00000473961 EPAS1Q99814 870 aa8.72□□□□□ -1.01
BRCA1-212ENST00000473961 GGCXP38435 758 aa8.71□□□□□ -1.02
BRCA1-212ENST00000473961 DDX27Q96GQ7 796 aaKnown RBP8.71□□□□□ -1.02
BRCA1-212ENST00000473961 PRR20EP86478 221 aa8.7□□□□□ -1.02
BRCA1-212ENST00000473961 PRR20CP86479 221 aa8.7□□□□□ -1.02
BRCA1-212ENST00000473961 PRR20DP86480 221 aa8.7□□□□□ -1.02
BRCA1-212ENST00000473961 PRR20BP86481 221 aa8.7□□□□□ -1.02
BRCA1-212ENST00000473961 PRR20AP86496 221 aa8.7□□□□□ -1.02
BRCA1-212ENST00000473961 ERICH6Q7L0X2 663 aa8.7□□□□□ -1.02
BRCA1-212ENST00000473961 CADPS2Q86UW7 1296 aa8.7□□□□□ -1.02
BRCA1-212ENST00000473961 ARHGEF1Q92888 912 aaKnown RBP8.7□□□□□ -1.02
BRCA1-212ENST00000473961 APLP1P51693 650 aa8.69□□□□□ -1.02
BRCA1-212ENST00000473961 MFSD10Q14728 455 aa8.69□□□□□ -1.02
BRCA1-212ENST00000473961 LARP6Q9BRS8 491 aaKnown RBP8.69□□□□□ -1.02
BRCA1-212ENST00000473961 TMUB1Q9BVT8 246 aa8.69□□□□□ -1.02
BRCA1-212ENST00000473961 ST8SIA5O15466 376 aa8.68□□□□□ -1.02
BRCA1-212ENST00000473961 E2F4Q16254 413 aa8.68□□□□□ -1.02
BRCA1-212ENST00000473961 LMOD2Q6P5Q4 547 aa8.68□□□□□ -1.02
BRCA1-212ENST00000473961 PACS2Q86VP3 889 aa8.68□□□□□ -1.02
BRCA1-212ENST00000473961 FAM187AA6NFU0 413 aa8.67□□□□□ -1.02
BRCA1-212ENST00000473961 SMAPO00193 183 aa8.67□□□□□ -1.02
BRCA1-212ENST00000473961 WFS1O76024 890 aa8.67□□□□□ -1.02
BRCA1-212ENST00000473961 SLC19A1P41440 591 aa8.67□□□□□ -1.02
BRCA1-212ENST00000473961 RBM33Q96EV2 1170 aaKnown RBP8.67□□□□□ -1.02
BRCA1-212ENST00000473961 WIPF1O43516 503 aa8.65□□□□□ -1.02
BRCA1-212ENST00000473961 SPRYD7Q5W111 196 aa8.65□□□□□ -1.02
BRCA1-212ENST00000473961 AAASQ9NRG9 546 aa8.65□□□□□ -1.02
BRCA1-212ENST00000473961 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.64□□□□□ -1.03
BRCA1-212ENST00000473961 C3orf80F5H4A9 247 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms