RNA–Protein interactions for RNA: ENST00000473961.5

BRCA1-212, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 958 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-212ENST00000473961 AEBP2Q6ZN18 517 aaPredicted RBP24.2■■□□□ 1.46
BRCA1-212ENST00000473961 CHIC1Q5VXU3 224 aa22.52■■□□□ 1.2
BRCA1-212ENST00000473961 SENP3Q9H4L4 574 aaPredicted RBP20.68■□□□□ 0.9
BRCA1-212ENST00000473961 PHF23Q9BUL5 403 aaPredicted RBP20.32■□□□□ 0.84
BRCA1-212ENST00000473961 FOXD1Q16676 465 aa19.41■□□□□ 0.7
BRCA1-212ENST00000473961 POTEDQ86YR6 584 aa19.27■□□□□ 0.68
BRCA1-212ENST00000473961 MSH5O43196 834 aa18.4■□□□□ 0.54
BRCA1-212ENST00000473961 PIAS4Q8N2W9 510 aaPredicted RBP17.93■□□□□ 0.46
BRCA1-212ENST00000473961 PPP6R1Q9UPN7 881 aa17.59■□□□□ 0.41
BRCA1-212ENST00000473961 ADRA2BP18089 450 aa17.47■□□□□ 0.39
BRCA1-212ENST00000473961 PLPPR3Q6T4P5 718 aa17.38■□□□□ 0.37
BRCA1-212ENST00000473961 DMRT2Q9Y5R5 561 aa16.31■□□□□ 0.2
BRCA1-212ENST00000473961 MAPK8IP2Q13387 824 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-212ENST00000473961 CACNB1Q02641 598 aaPredicted RBP16.23■□□□□ 0.19
BRCA1-212ENST00000473961 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
BRCA1-212ENST00000473961 RNF39Q9H2S5 420 aa15.66■□□□□ 0.1
BRCA1-212ENST00000473961 DCAF8L1A6NGE4 600 aa15.63■□□□□ 0.09
BRCA1-212ENST00000473961 HOXD11P31277 338 aaPredicted RBP15.43■□□□□ 0.06
BRCA1-212ENST00000473961 C1QBPQ07021 282 aaKnown RBP15.35■□□□□ 0.05
BRCA1-212ENST00000473961 PPP4R3CPQ6ZMV5 832 aa15.16■□□□□ 0.02
BRCA1-212ENST00000473961 RNF216Q9NWF9 866 aaPredicted RBP15.09■□□□□ 0.01
BRCA1-212ENST00000473961 CNKSR2Q8WXI2 1034 aa15.03■□□□□ -0
BRCA1-212ENST00000473961 DNAJC5BQ9UF47 199 aa15.01□□□□□ -0.01
BRCA1-212ENST00000473961 POTEHQ6S545 545 aa14.93□□□□□ -0.02
BRCA1-212ENST00000473961 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.64□□□□□ -0.077e-7■■□□□ 12.5
BRCA1-212ENST00000473961 DSG3P32926 999 aa14.42□□□□□ -0.1
BRCA1-212ENST00000473961 SPINK5Q9NQ38 1064 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-212ENST00000473961 U3KPZ7 1027 aaPredicted RBP14.33□□□□□ -0.12
BRCA1-212ENST00000473961 CAPN15O75808 1086 aa14.29□□□□□ -0.12
BRCA1-212ENST00000473961 NCBP3Q53F19 620 aaKnown RBP14.29□□□□□ -0.12
BRCA1-212ENST00000473961 NPM3O75607 178 aaKnown RBP14.16□□□□□ -0.14
BRCA1-212ENST00000473961 ABCB7O75027 752 aa13.93□□□□□ -0.18
BRCA1-212ENST00000473961 TRHP20396 242 aaPredicted RBP13.89□□□□□ -0.19
BRCA1-212ENST00000473961 ZNF219Q9P2Y4 722 aaPredicted RBP13.83□□□□□ -0.2
BRCA1-212ENST00000473961 CHRDL2Q6WN34 429 aa13.75□□□□□ -0.21
BRCA1-212ENST00000473961 SLC4A2P04920 1241 aa13.74□□□□□ -0.21
BRCA1-212ENST00000473961 APLP2Q06481 763 aa13.73□□□□□ -0.21
BRCA1-212ENST00000473961 RBM42Q9BTD8 480 aaKnown RBP13.73□□□□□ -0.21
BRCA1-212ENST00000473961 SP7Q8TDD2 431 aaPredicted RBP13.65□□□□□ -0.22
BRCA1-212ENST00000473961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.56□□□□□ -0.24
BRCA1-212ENST00000473961 HNRNPUL2Q1KMD3 747 aaKnown RBP13.56□□□□□ -0.24
BRCA1-212ENST00000473961 SAMD1Q6SPF0 538 aaPredicted RBP13.47□□□□□ -0.25
BRCA1-212ENST00000473961 POLA2Q14181 598 aa13.34□□□□□ -0.27
BRCA1-212ENST00000473961 PIP4P2Q8N4L2 257 aa13.29□□□□□ -0.28
BRCA1-212ENST00000473961 AKT1S1Q96B36 256 aa13.27□□□□□ -0.29
BRCA1-212ENST00000473961 KCNA4P22459 653 aa13.24□□□□□ -0.29
BRCA1-212ENST00000473961 HAX1O00165 279 aa13.2□□□□□ -0.3
BRCA1-212ENST00000473961 REM2Q8IYK8 340 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-212ENST00000473961 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
BRCA1-212ENST00000473961 FXR2P51116 673 aaKnown RBP eCLIP13.09□□□□□ -0.31
BRCA1-212ENST00000473961 PITPNM1O00562 1244 aa13.06□□□□□ -0.32
BRCA1-212ENST00000473961 EVX2Q03828 476 aa13.05□□□□□ -0.32
BRCA1-212ENST00000473961 OSCARQ8IYS5 282 aa12.99□□□□□ -0.33
BRCA1-212ENST00000473961 ZBTB12Q9Y330 459 aaPredicted RBP12.98□□□□□ -0.33
BRCA1-212ENST00000473961 ATF5Q9Y2D1 282 aaPredicted RBP12.9□□□□□ -0.34
BRCA1-212ENST00000473961 LHX8Q68G74 356 aa12.77□□□□□ -0.37
BRCA1-212ENST00000473961 C19orf67A6NJJ6 358 aa12.7□□□□□ -0.38
BRCA1-212ENST00000473961 GABBR2O75899 941 aa12.68□□□□□ -0.38
BRCA1-212ENST00000473961 PRKAR2AP13861 404 aaKnown RBP12.68□□□□□ -0.38
BRCA1-212ENST00000473961 PLSCR2Q9NRY7 297 aa12.57□□□□□ -0.4
BRCA1-212ENST00000473961 SPDYE2BA6NHP3 402 aa12.56□□□□□ -0.4
BRCA1-212ENST00000473961 SPDYE6P0CI01 402 aa12.56□□□□□ -0.4
BRCA1-212ENST00000473961 SPDYE2Q495Y8 402 aa12.56□□□□□ -0.4
BRCA1-212ENST00000473961 FOXD4L1Q9NU39 408 aa12.56□□□□□ -0.4
BRCA1-212ENST00000473961 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.41
BRCA1-212ENST00000473961 SPDYE1Q8NFV5 336 aaPredicted RBP12.5□□□□□ -0.41
BRCA1-212ENST00000473961 POTEIP0CG38 1075 aa12.45□□□□□ -0.42
BRCA1-212ENST00000473961 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
BRCA1-212ENST00000473961 FBLN2P98095 1184 aa12.35□□□□□ -0.43
BRCA1-212ENST00000473961 SSUH2Q9Y2M2 353 aa12.34□□□□□ -0.43
BRCA1-212ENST00000473961 SLC4A1APQ9BWU0 796 aaKnown RBP12.31□□□□□ -0.44
BRCA1-212ENST00000473961 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
BRCA1-212ENST00000473961 ZNF692Q9BU19 519 aaPredicted RBP12.26□□□□□ -0.45
BRCA1-212ENST00000473961 CD44P16070 742 aaKnown RBP12.24□□□□□ -0.45
BRCA1-212ENST00000473961 ATXN8OSP0DMR3 200 aa12.21□□□□□ -0.45
BRCA1-212ENST00000473961 PRR29P0C7W0 189 aa12.2□□□□□ -0.46
BRCA1-212ENST00000473961 ZBTB22O15209 634 aa12.19□□□□□ -0.46
BRCA1-212ENST00000473961 CLCN6P51797 869 aa12.15□□□□□ -0.46
BRCA1-212ENST00000473961 DCBLD2Q96PD2 775 aa12.13□□□□□ -0.47
BRCA1-212ENST00000473961 FARP1Q9Y4F1 1045 aaPredicted RBP12.13□□□□□ -0.47
BRCA1-212ENST00000473961 EHMT2Q96KQ7 1210 aa12.12□□□□□ -0.47
BRCA1-212ENST00000473961 OTUD5Q96G74 571 aa12.1□□□□□ -0.47
BRCA1-212ENST00000473961 PABPN1Q86U42 306 aaKnown RBP eCLIP12.09□□□□□ -0.47
BRCA1-212ENST00000473961 POTEMA6NI47 508 aa12.08□□□□□ -0.48
BRCA1-212ENST00000473961 POTEB2H3BUK9 544 aa12.03□□□□□ -0.48
BRCA1-212ENST00000473961 ZNF579Q8NAF0 562 aaKnown RBP12.03□□□□□ -0.48
BRCA1-212ENST00000473961 POTEGQ6S5H5 508 aa12.02□□□□□ -0.49
BRCA1-212ENST00000473961 GALR2O43603 387 aaPredicted RBP11.95□□□□□ -0.5
BRCA1-212ENST00000473961 ZRANB1Q9UGI0 708 aa11.94□□□□□ -0.5
BRCA1-212ENST00000473961 PCDH10Q9P2E7 1040 aa11.86□□□□□ -0.51
BRCA1-212ENST00000473961 PELP1Q8IZL8 1130 aaKnown RBP11.8□□□□□ -0.52
BRCA1-212ENST00000473961 CREBZFQ9NS37 354 aa11.78□□□□□ -0.52
BRCA1-212ENST00000473961 LCE2DQ5TA82 110 aaPredicted RBP11.77□□□□□ -0.53
BRCA1-212ENST00000473961 PHF12Q96QT6 1004 aa11.75□□□□□ -0.53
BRCA1-212ENST00000473961 POTEJP0CG39 1038 aa11.73□□□□□ -0.53
BRCA1-212ENST00000473961 CSRNP3Q8WYN3 585 aa11.69□□□□□ -0.54
BRCA1-212ENST00000473961 METRNQ9UJH8 293 aa11.68□□□□□ -0.54
BRCA1-212ENST00000473961 PAK3O75914 559 aaPredicted RBP11.64□□□□□ -0.55
BRCA1-212ENST00000473961 ASTLQ6HA08 431 aaPredicted RBP11.64□□□□□ -0.55
BRCA1-212ENST00000473961 MAMSTRQ6ZN01 415 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms