RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 LAMC1P11047 1609 aa8.12□□□□□ -1.11
HERC4-209ENST00000473533 E9PCH4 1651 aa8.12□□□□□ -1.11
HERC4-209ENST00000473533 NUP155O75694 1391 aa8.12□□□□□ -1.11
HERC4-209ENST00000473533 C9orf84Q5VXU9 1444 aa8.11□□□□□ -1.11
HERC4-209ENST00000473533 ZNF326Q5BKZ1 582 aaKnown RBP8.11□□□□□ -1.11
HERC4-209ENST00000473533 EIF2AK4Q9P2K8 1649 aaKnown RBP8.11□□□□□ -1.11
HERC4-209ENST00000473533 PLEKHD1A6NEE1 506 aa8.11□□□□□ -1.11
HERC4-209ENST00000473533 RCAN3Q9UKA8 241 aa8.11□□□□□ -1.11
HERC4-209ENST00000473533 PTPRGP23470 1445 aa8.11□□□□□ -1.11
HERC4-209ENST00000473533 PRG4Q92954 1404 aaPredicted RBP8.11□□□□□ -1.11
HERC4-209ENST00000473533 ZNF644Q9H582 1327 aaPredicted RBP8.1□□□□□ -1.11
HERC4-209ENST00000473533 SYNJ2O15056 1496 aa8.09□□□□□ -1.11
HERC4-209ENST00000473533 PARD3Q8TEW0 1356 aa8.09□□□□□ -1.11
HERC4-209ENST00000473533 CNGB1Q14028 1251 aaPredicted RBP8.09□□□□□ -1.11
HERC4-209ENST00000473533 NUP160Q12769 1436 aa8.09□□□□□ -1.11
HERC4-209ENST00000473533 ZNF777Q9ULD5 760 aaPredicted RBP8.08□□□□□ -1.12
HERC4-209ENST00000473533 CDC42BPAQ5VT25 1732 aa8.08□□□□□ -1.12
HERC4-209ENST00000473533 NBR1Q14596 966 aa8.08□□□□□ -1.12
HERC4-209ENST00000473533 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.08□□□□□ -1.12
HERC4-209ENST00000473533 CCDC144AA2RUR9 1427 aa8.08□□□□□ -1.12
HERC4-209ENST00000473533 GPRASP1Q5JY77 1395 aa8.07□□□□□ -1.12
HERC4-209ENST00000473533 EIF4G3O43432 1585 aaKnown RBP8.07□□□□□ -1.12
HERC4-209ENST00000473533 CCDC141Q6ZP82 1450 aa8.07□□□□□ -1.12
HERC4-209ENST00000473533 ARID3CA6NKF2 412 aa8.07□□□□□ -1.12
HERC4-209ENST00000473533 ABCC10Q5T3U5 1492 aa8.07□□□□□ -1.12
HERC4-209ENST00000473533 DAXXQ9UER7 740 aaPredicted RBP8.07□□□□□ -1.12
HERC4-209ENST00000473533 SLC24A1O60721 1099 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 STAC3Q96MF2 364 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 TRPM1Q7Z4N2 1603 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 ABCA8O94911 1581 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 ST20-MTHFSA0A0A6YYL1 179 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 BLMP54132 1417 aaPredicted RBP8.06□□□□□ -1.12
HERC4-209ENST00000473533 PDE4AP27815 886 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 CDCA8Q53HL2 280 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 CHMP7Q8WUX9 453 aaPredicted RBP8.06□□□□□ -1.12
HERC4-209ENST00000473533 MAST1Q9Y2H9 1570 aa8.06□□□□□ -1.12
HERC4-209ENST00000473533 PRAG1Q86YV5 1406 aa8.05□□□□□ -1.12
HERC4-209ENST00000473533 DCAF11Q8TEB1 546 aa8.05□□□□□ -1.12
HERC4-209ENST00000473533 COL17A1Q9UMD9 1497 aaPredicted RBP8.05□□□□□ -1.12
HERC4-209ENST00000473533 PAK3O75914 559 aaPredicted RBP8.05□□□□□ -1.12
HERC4-209ENST00000473533 BACH2Q9BYV9 841 aa8.05□□□□□ -1.12
HERC4-209ENST00000473533 EIF3AQ14152 1382 aaKnown RBP8.05□□□□□ -1.12
HERC4-209ENST00000473533 PLB1Q6P1J6 1458 aa8.05□□□□□ -1.12
HERC4-209ENST00000473533 TMF1P82094 1093 aa8.05□□□□□ -1.12
HERC4-209ENST00000473533 FAM135AQ9P2D6 1515 aa8.04□□□□□ -1.12
HERC4-209ENST00000473533 NGEFQ8N5V2 710 aa8.04□□□□□ -1.12
HERC4-209ENST00000473533 UNC13BO14795 1591 aa8.04□□□□□ -1.12
HERC4-209ENST00000473533 PRDM15P57071 1507 aaPredicted RBP8.04□□□□□ -1.12
HERC4-209ENST00000473533 ZNF608Q9ULD9 1512 aaPredicted RBP8.04□□□□□ -1.12
HERC4-209ENST00000473533 EXOC6Q8TAG9 804 aa8.03□□□□□ -1.12
HERC4-209ENST00000473533 CENPQQ7L2Z9 268 aaPredicted RBP8.02□□□□□ -1.12
HERC4-209ENST00000473533 PREX2Q70Z35 1606 aa8.02□□□□□ -1.13
HERC4-209ENST00000473533 KDM2AQ9Y2K7 1162 aa8.02□□□□□ -1.13
HERC4-209ENST00000473533 ATP10AO60312 1499 aa8.02□□□□□ -1.13
HERC4-209ENST00000473533 JPH4Q96JJ6 628 aa8.02□□□□□ -1.13
HERC4-209ENST00000473533 PLXNC1O60486 1568 aa8.01□□□□□ -1.13
HERC4-209ENST00000473533 NEFMP07197 916 aa8.01□□□□□ -1.13
HERC4-209ENST00000473533 ERBINQ96RT1 1412 aa8.01□□□□□ -1.13
HERC4-209ENST00000473533 ATP10BO94823 1461 aa8.01□□□□□ -1.13
HERC4-209ENST00000473533 IQGAP3Q86VI3 1631 aa8.01□□□□□ -1.13
HERC4-209ENST00000473533 NPM2Q86SE8 214 aaKnown RBP8.01□□□□□ -1.13
HERC4-209ENST00000473533 CLASP1Q7Z460 1538 aa8.01□□□□□ -1.13
HERC4-209ENST00000473533 WDR43Q15061 677 aaKnown RBP eCLIP8□□□□□ -1.13
HERC4-209ENST00000473533 NINLQ9Y2I6 1382 aa8□□□□□ -1.13
HERC4-209ENST00000473533 DUOX2Q9NRD8 1548 aa7.99□□□□□ -1.13
HERC4-209ENST00000473533 SENP3-EIF4A1A0A087X0R7 540 aa7.99□□□□□ -1.13
HERC4-209ENST00000473533 PER1O15534 1290 aaPredicted RBP7.99□□□□□ -1.13
HERC4-209ENST00000473533 NPC1L1Q9UHC9 1359 aa7.99□□□□□ -1.13
HERC4-209ENST00000473533 AAMPQ13685 434 aa7.98□□□□□ -1.13
HERC4-209ENST00000473533 RNF17Q9BXT8 1623 aaKnown RBP7.98□□□□□ -1.13
HERC4-209ENST00000473533 KNSTRNQ9Y448 316 aa7.98□□□□□ -1.13
HERC4-209ENST00000473533 SCAPERQ9BY12 1400 aa7.98□□□□□ -1.13
HERC4-209ENST00000473533 SAMD9LQ8IVG5 1584 aa7.98□□□□□ -1.13
HERC4-209ENST00000473533 A2MP01023 1474 aa7.98□□□□□ -1.13
HERC4-209ENST00000473533 FAM161AQ3B820 660 aa7.97□□□□□ -1.13
HERC4-209ENST00000473533 SYNMO15061 1565 aa7.97□□□□□ -1.13
HERC4-209ENST00000473533 ERCC6Q03468 1493 aa7.97□□□□□ -1.13
HERC4-209ENST00000473533 PIK3C2GO75747 1445 aa7.97□□□□□ -1.13
HERC4-209ENST00000473533 MAGI2Q86UL8 1455 aa7.97□□□□□ -1.13
HERC4-209ENST00000473533 GOLGA2Q08379 1002 aa7.96□□□□□ -1.13
HERC4-209ENST00000473533 MYO5CQ9NQX4 1742 aa7.96□□□□□ -1.13
HERC4-209ENST00000473533 CRBNQ96SW2 442 aa7.96□□□□□ -1.14
HERC4-209ENST00000473533 PANK3Q9H999 370 aa7.96□□□□□ -1.14
HERC4-209ENST00000473533 HNRNPMP52272 730 aaKnown RBP eCLIP7.96□□□□□ -1.148e-8■■■■■ 31.1
HERC4-209ENST00000473533 ARHGAP5Q13017 1502 aa7.96□□□□□ -1.14
HERC4-209ENST00000473533 CDC42BPBQ9Y5S2 1711 aa7.95□□□□□ -1.14
HERC4-209ENST00000473533 TESK2Q96S53 571 aa7.95□□□□□ -1.14
HERC4-209ENST00000473533 ABCC2Q92887 1545 aa7.95□□□□□ -1.14
HERC4-209ENST00000473533 GSE1Q14687 1217 aa7.95□□□□□ -1.14
HERC4-209ENST00000473533 CC2D1BQ5T0F9 858 aaKnown RBP7.95□□□□□ -1.14
HERC4-209ENST00000473533 ASXL1Q8IXJ9 1541 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 KDM2BQ8NHM5 1336 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 LAS1LQ9Y4W2 734 aaKnown RBP7.94□□□□□ -1.14
HERC4-209ENST00000473533 SYCP2Q9BX26 1530 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 ZMYM3Q14202 1370 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 DISP3Q9P2K9 1392 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 NEURL4Q96JN8 1562 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 FBLN2P98095 1184 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 BECN1Q14457 450 aa7.94□□□□□ -1.14
HERC4-209ENST00000473533 SCAF11Q99590 1463 aaKnown RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms