RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 PLIN1O60240 522 aa18.69■□□□□ 0.58
PTPRU-205ENST00000460170 L1TD1Q5T7N2 865 aaKnown RBP18.68■□□□□ 0.58
PTPRU-205ENST00000460170 SLKQ9H2G2 1235 aaPredicted RBP18.67■□□□□ 0.58
PTPRU-205ENST00000460170 GRIN2BQ13224 1484 aa18.67■□□□□ 0.58
PTPRU-205ENST00000460170 KCNJ4P48050 445 aa18.66■□□□□ 0.58
PTPRU-205ENST00000460170 TIAM1Q13009 1591 aa18.66■□□□□ 0.58
PTPRU-205ENST00000460170 CENPQQ7L2Z9 268 aaPredicted RBP18.66■□□□□ 0.58
PTPRU-205ENST00000460170 APBB1O00213 710 aa18.66■□□□□ 0.58
PTPRU-205ENST00000460170 RRP7AQ9Y3A4 280 aaKnown RBP18.66■□□□□ 0.58
PTPRU-205ENST00000460170 E9PSI1 815 aa18.66■□□□□ 0.58
PTPRU-205ENST00000460170 MCCP23508 829 aa18.66■□□□□ 0.58
PTPRU-205ENST00000460170 PDE4AP27815 886 aa18.65■□□□□ 0.58
PTPRU-205ENST00000460170 ZRSR1Q15695 479 aaKnown RBP18.64■□□□□ 0.58
PTPRU-205ENST00000460170 MIA2Q96PC5 1412 aa18.64■□□□□ 0.57
PTPRU-205ENST00000460170 VGFO15240 615 aaPredicted RBP18.64■□□□□ 0.57
PTPRU-205ENST00000460170 HFM1A2PYH4 1435 aa18.64■□□□□ 0.57
PTPRU-205ENST00000460170 CRBNQ96SW2 442 aa18.64■□□□□ 0.57
PTPRU-205ENST00000460170 PRDM2Q13029 1718 aa18.63■□□□□ 0.57
PTPRU-205ENST00000460170 TOPBP1Q92547 1522 aa18.63■□□□□ 0.57
PTPRU-205ENST00000460170 APAF1O14727 1248 aa18.63■□□□□ 0.57
PTPRU-205ENST00000460170 CGNL1Q0VF96 1302 aa18.63■□□□□ 0.57
PTPRU-205ENST00000460170 NESP48681 1621 aa18.63■□□□□ 0.57
PTPRU-205ENST00000460170 POLA1P09884 1462 aaPredicted RBP18.62■□□□□ 0.57
PTPRU-205ENST00000460170 STAC3Q96MF2 364 aa18.62■□□□□ 0.57
PTPRU-205ENST00000460170 FANCIQ9NVI1 1328 aa18.61■□□□□ 0.57
PTPRU-205ENST00000460170 MFAP1P55081 439 aaKnown RBP18.61■□□□□ 0.57
PTPRU-205ENST00000460170 EVC2Q86UK5 1308 aa18.61■□□□□ 0.57
PTPRU-205ENST00000460170 FGD1P98174 961 aa18.61■□□□□ 0.57
PTPRU-205ENST00000460170 DNTTIP2Q5QJE6 756 aaKnown RBP18.61■□□□□ 0.57
PTPRU-205ENST00000460170 NAP1L5Q96NT1 182 aaPredicted RBP18.61■□□□□ 0.57
PTPRU-205ENST00000460170 EHBP1L1Q8N3D4 1523 aa18.6■□□□□ 0.57
PTPRU-205ENST00000460170 LMOD3Q0VAK6 560 aa18.6■□□□□ 0.57
PTPRU-205ENST00000460170 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.6■□□□□ 0.57
PTPRU-205ENST00000460170 NGEFQ8N5V2 710 aa18.59■□□□□ 0.57
PTPRU-205ENST00000460170 GBP4Q96PP9 640 aa18.59■□□□□ 0.57
PTPRU-205ENST00000460170 FAM161AQ3B820 660 aa18.58■□□□□ 0.57
PTPRU-205ENST00000460170 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.58■□□□□ 0.569e-7■■■■■ 37.2
PTPRU-205ENST00000460170 PAK3O75914 559 aaPredicted RBP18.58■□□□□ 0.56
PTPRU-205ENST00000460170 PLCB2Q00722 1185 aa18.58■□□□□ 0.56
PTPRU-205ENST00000460170 BCL2L13Q9BXK5 485 aa18.57■□□□□ 0.56
PTPRU-205ENST00000460170 STK31Q9BXU1 1019 aa18.57■□□□□ 0.56
PTPRU-205ENST00000460170 BRD4O60885 1362 aaPredicted RBP18.56■□□□□ 0.56
PTPRU-205ENST00000460170 NBPF8Q3BBV2 869 aa18.55■□□□□ 0.56
PTPRU-205ENST00000460170 TRHP20396 242 aaPredicted RBP18.54■□□□□ 0.56
PTPRU-205ENST00000460170 COG6Q9Y2V7 657 aa18.54■□□□□ 0.56
PTPRU-205ENST00000460170 ZKSCAN2Q63HK3 967 aa18.54■□□□□ 0.56
PTPRU-205ENST00000460170 CHMP4AQ9BY43 222 aa18.54■□□□□ 0.56
PTPRU-205ENST00000460170 HMMRO75330 724 aa18.53■□□□□ 0.56
PTPRU-205ENST00000460170 PTMSP20962 102 aa18.53■□□□□ 0.56
PTPRU-205ENST00000460170 GZF1Q9H116 711 aaPredicted RBP18.53■□□□□ 0.56
PTPRU-205ENST00000460170 KIAA1211Q6ZU35 1233 aa18.52■□□□□ 0.56
PTPRU-205ENST00000460170 GOLGA6L4A6NEF3 574 aa18.52■□□□□ 0.56
PTPRU-205ENST00000460170 USP35Q9P2H5 1018 aa18.52■□□□□ 0.55
PTPRU-205ENST00000460170 EID1Q9Y6B2 187 aa18.51■□□□□ 0.55
PTPRU-205ENST00000460170 KIAA1107Q9UPP5 1409 aa18.51■□□□□ 0.55
PTPRU-205ENST00000460170 NGDNQ8NEJ9 315 aaKnown RBP18.51■□□□□ 0.55
PTPRU-205ENST00000460170 MINK1Q8N4C8 1332 aaPredicted RBP18.5■□□□□ 0.55
PTPRU-205ENST00000460170 WDR97A6NE52 1622 aa18.5■□□□□ 0.55
PTPRU-205ENST00000460170 DNMBPQ6XZF7 1577 aa18.5■□□□□ 0.55
PTPRU-205ENST00000460170 NAP1L2Q9ULW6 460 aaPredicted RBP18.5■□□□□ 0.55
PTPRU-205ENST00000460170 TROQ12816 1431 aaPredicted RBP18.49■□□□□ 0.55
PTPRU-205ENST00000460170 BICRAQ9NZM4 1560 aa18.49■□□□□ 0.55
PTPRU-205ENST00000460170 SYNJ2O15056 1496 aa18.49■□□□□ 0.55
PTPRU-205ENST00000460170 CC2D2AQ9P2K1 1620 aa18.49■□□□□ 0.55
PTPRU-205ENST00000460170 SLC4A10Q6U841 1118 aa18.49■□□□□ 0.55
PTPRU-205ENST00000460170 NAIPQ13075 1403 aa18.48■□□□□ 0.55
PTPRU-205ENST00000460170 PRG4Q92954 1404 aaPredicted RBP18.48■□□□□ 0.55
PTPRU-205ENST00000460170 AMPHP49418 695 aa18.48■□□□□ 0.55
PTPRU-205ENST00000460170 NUTM2FA1L443 756 aa18.47■□□□□ 0.55
PTPRU-205ENST00000460170 ELL2O00472 640 aaPredicted RBP18.47■□□□□ 0.55
PTPRU-205ENST00000460170 MRC2Q9UBG0 1479 aa18.47■□□□□ 0.55
PTPRU-205ENST00000460170 IFT140Q96RY7 1462 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 C9orf84Q5VXU9 1444 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 HECW1Q76N89 1606 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 RUNDC1Q96C34 613 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 COG3Q96JB2 828 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 MSNP26038 577 aaKnown RBP18.46■□□□□ 0.55
PTPRU-205ENST00000460170 SLC4A3P48751 1232 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 ADAMTS8Q9UP79 889 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 AFAP1Q8N556 730 aa18.46■□□□□ 0.55
PTPRU-205ENST00000460170 ABCA10Q8WWZ4 1543 aa18.46■□□□□ 0.54
PTPRU-205ENST00000460170 ARHGAP5Q13017 1502 aa18.45■□□□□ 0.54
PTPRU-205ENST00000460170 NBPF1Q3BBV0 1214 aa18.45■□□□□ 0.54
PTPRU-205ENST00000460170 DAPK1P53355 1430 aa18.45■□□□□ 0.54
PTPRU-205ENST00000460170 DIAPH1O60610 1272 aaKnown RBP18.44■□□□□ 0.54
PTPRU-205ENST00000460170 TAOK2Q9UL54 1235 aa18.44■□□□□ 0.54
PTPRU-205ENST00000460170 SUPT6HQ7KZ85 1726 aaKnown RBP18.44■□□□□ 0.54
PTPRU-205ENST00000460170 GOLGA6L3A6NEY3 463 aa18.43■□□□□ 0.54
PTPRU-205ENST00000460170 OSCARQ8IYS5 282 aa18.43■□□□□ 0.54
PTPRU-205ENST00000460170 TRIM6-TRIM34B2RNG4 842 aa18.43■□□□□ 0.54
PTPRU-205ENST00000460170 HDAC5Q9UQL6 1122 aa18.42■□□□□ 0.54
PTPRU-205ENST00000460170 DDX19BQ9UMR2 479 aa18.42■□□□□ 0.54
PTPRU-205ENST00000460170 MAP3K1Q13233 1512 aa18.42■□□□□ 0.54
PTPRU-205ENST00000460170 ANKRD45Q5TZF3 282 aa18.42■□□□□ 0.54
PTPRU-205ENST00000460170 DZIP1LQ8IYY4 767 aaKnown RBP18.42■□□□□ 0.54
PTPRU-205ENST00000460170 CDCA7LQ96GN5 454 aa18.41■□□□□ 0.54
PTPRU-205ENST00000460170 PCF11O94913 1555 aaKnown RBP18.41■□□□□ 0.54
PTPRU-205ENST00000460170 RIPK4P57078 832 aa18.41■□□□□ 0.54
PTPRU-205ENST00000460170 CSB-PGBD3P0DP91 1061 aa18.4■□□□□ 0.54
PTPRU-205ENST00000460170 PNISRQ8TF01 805 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms