RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.64□□□□□ -0.87
SYNE1-213ENST00000448038 EVC2Q86UK5 1308 aa9.64□□□□□ -0.87
SYNE1-213ENST00000448038 MINK1Q8N4C8 1332 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-213ENST00000448038 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.63□□□□□ -0.87
SYNE1-213ENST00000448038 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.63□□□□□ -0.87
SYNE1-213ENST00000448038 MYT1Q01538 1121 aa9.63□□□□□ -0.87
SYNE1-213ENST00000448038 CD109Q6YHK3 1445 aa9.62□□□□□ -0.87
SYNE1-213ENST00000448038 NLRP13Q86W25 1043 aa9.62□□□□□ -0.87
SYNE1-213ENST00000448038 MAP3K1Q13233 1512 aa9.62□□□□□ -0.87
SYNE1-213ENST00000448038 KIF14Q15058 1648 aa9.62□□□□□ -0.87
SYNE1-213ENST00000448038 HSP90AA1P07900 732 aaKnown RBP9.61□□□□□ -0.87
SYNE1-213ENST00000448038 RTF1Q92541 710 aaKnown RBP9.61□□□□□ -0.87
SYNE1-213ENST00000448038 CSB-PGBD3P0DP91 1061 aa9.6□□□□□ -0.87
SYNE1-213ENST00000448038 KIAA1107Q9UPP5 1409 aa9.6□□□□□ -0.87
SYNE1-213ENST00000448038 CCDC141Q6ZP82 1450 aa9.6□□□□□ -0.87
SYNE1-213ENST00000448038 CAMSAP2Q08AD1 1489 aa9.6□□□□□ -0.87
SYNE1-213ENST00000448038 CENPJQ9HC77 1338 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-213ENST00000448038 ROCK1Q13464 1354 aa9.59□□□□□ -0.87
SYNE1-213ENST00000448038 ADAMTS12P58397 1594 aa9.58□□□□□ -0.88
SYNE1-213ENST00000448038 TMEM132EQ6IEE7 984 aa9.58□□□□□ -0.88
SYNE1-213ENST00000448038 WDR62O43379 1518 aa9.58□□□□□ -0.88
SYNE1-213ENST00000448038 PTPN23Q9H3S7 1636 aa9.58□□□□□ -0.88
SYNE1-213ENST00000448038 MS4A1P11836 297 aa9.58□□□□□ -0.88
SYNE1-213ENST00000448038 NAIPQ13075 1403 aa9.58□□□□□ -0.88
SYNE1-213ENST00000448038 AMPHP49418 695 aa9.58□□□□□ -0.88
SYNE1-213ENST00000448038 CGNL1Q0VF96 1302 aa9.57□□□□□ -0.88
SYNE1-213ENST00000448038 CFAP70Q5T0N1 1121 aa9.57□□□□□ -0.88
SYNE1-213ENST00000448038 EIF4G3O43432 1585 aaKnown RBP9.57□□□□□ -0.88
SYNE1-213ENST00000448038 ABCC5O15440 1437 aa9.57□□□□□ -0.88
SYNE1-213ENST00000448038 MYBBP1AQ9BQG0 1328 aaKnown RBP9.57□□□□□ -0.88
SYNE1-213ENST00000448038 ADGRL1O94910 1474 aa9.57□□□□□ -0.88
SYNE1-213ENST00000448038 PRKRIP1Q9H875 184 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-213ENST00000448038 CCDC146Q8IYE0 955 aa9.56□□□□□ -0.88
SYNE1-213ENST00000448038 PPP4R2Q9NY27 417 aa9.56□□□□□ -0.88
SYNE1-213ENST00000448038 THOC2Q8NI27 1593 aaKnown RBP9.56□□□□□ -0.88
SYNE1-213ENST00000448038 CTTNBP2Q8WZ74 1663 aa9.56□□□□□ -0.88
SYNE1-213ENST00000448038 CHMP4BQ9H444 224 aaKnown RBP9.56□□□□□ -0.88
SYNE1-213ENST00000448038 CALD1Q05682 793 aaKnown RBP9.55□□□□□ -0.88
SYNE1-213ENST00000448038 COG3Q96JB2 828 aa9.55□□□□□ -0.88
SYNE1-213ENST00000448038 SLC52A1Q9NWF4 448 aa9.55□□□□□ -0.88
SYNE1-213ENST00000448038 RAPGEF6Q8TEU7 1601 aa9.55□□□□□ -0.88
SYNE1-213ENST00000448038 TXNDC2Q86VQ3 553 aa9.55□□□□□ -0.88
SYNE1-213ENST00000448038 LTV1Q96GA3 475 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-213ENST00000448038 KIF7Q2M1P5 1343 aa9.54□□□□□ -0.88
SYNE1-213ENST00000448038 ATP10BO94823 1461 aa9.54□□□□□ -0.88
SYNE1-213ENST00000448038 CCDC7Q96M83 1385 aa9.54□□□□□ -0.88
SYNE1-213ENST00000448038 UGGT2Q9NYU1 1516 aa9.53□□□□□ -0.88
SYNE1-213ENST00000448038 NBPF1Q3BBV0 1214 aa9.53□□□□□ -0.88
SYNE1-213ENST00000448038 FANCAO15360 1455 aa9.53□□□□□ -0.88
SYNE1-213ENST00000448038 POGZQ7Z3K3 1410 aa9.53□□□□□ -0.88
SYNE1-213ENST00000448038 AKNAQ7Z591 1439 aa9.53□□□□□ -0.88
SYNE1-213ENST00000448038 NUP153P49790 1475 aaKnown RBP9.52□□□□□ -0.88
SYNE1-213ENST00000448038 NBPF8Q3BBV2 869 aa9.52□□□□□ -0.89
SYNE1-213ENST00000448038 RCAN3Q9UKA8 241 aa9.52□□□□□ -0.89
SYNE1-213ENST00000448038 THEMISQ8N1K5 641 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-213ENST00000448038 GOLGA2Q08379 1002 aa9.52□□□□□ -0.89
SYNE1-213ENST00000448038 CABP2Q9NPB3 220 aa9.52□□□□□ -0.89
SYNE1-213ENST00000448038 B4GALNT3Q6L9W6 998 aa9.51□□□□□ -0.89
SYNE1-213ENST00000448038 KIAA0556O60303 1618 aa9.51□□□□□ -0.89
SYNE1-213ENST00000448038 GPATCH8Q9UKJ3 1502 aaKnown RBP9.51□□□□□ -0.89
SYNE1-213ENST00000448038 NCOA1Q15788 1441 aa9.51□□□□□ -0.89
SYNE1-213ENST00000448038 CCDC9Q9Y3X0 531 aaKnown RBP9.51□□□□□ -0.89
SYNE1-213ENST00000448038 NPHP1O15259 732 aa9.51□□□□□ -0.89
SYNE1-213ENST00000448038 RGS3P49796 1198 aa9.51□□□□□ -0.89
SYNE1-213ENST00000448038 PSME1Q06323 249 aa9.5□□□□□ -0.89
SYNE1-213ENST00000448038 IPO8O15397 1037 aaKnown RBP9.5□□□□□ -0.89
SYNE1-213ENST00000448038 ASXL2Q76L83 1435 aa9.5□□□□□ -0.89
SYNE1-213ENST00000448038 ERBINQ96RT1 1412 aa9.5□□□□□ -0.89
SYNE1-213ENST00000448038 PBRM1Q86U86 1689 aa9.5□□□□□ -0.89
SYNE1-213ENST00000448038 DENND4BO75064 1496 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-213ENST00000448038 OS9Q13438 667 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-213ENST00000448038 RRP7AQ9Y3A4 280 aaKnown RBP9.49□□□□□ -0.89
SYNE1-213ENST00000448038 LMOD3Q0VAK6 560 aa9.49□□□□□ -0.89
SYNE1-213ENST00000448038 WASHC2AQ641Q2 1341 aa9.49□□□□□ -0.89
SYNE1-213ENST00000448038 NUP160Q12769 1436 aa9.49□□□□□ -0.89
SYNE1-213ENST00000448038 PRAM1Q96QH2 718 aa9.49□□□□□ -0.89
SYNE1-213ENST00000448038 ATF3P18847 181 aa9.48□□□□□ -0.89
SYNE1-213ENST00000448038 ABCA5Q8WWZ7 1642 aa9.48□□□□□ -0.89
SYNE1-213ENST00000448038 RPGRIP1LQ68CZ1 1315 aa9.48□□□□□ -0.89
SYNE1-213ENST00000448038 PDE3BQ13370 1112 aa9.48□□□□□ -0.89
SYNE1-213ENST00000448038 ANKRD30BQ9BXX2 1392 aa9.47□□□□□ -0.89
SYNE1-213ENST00000448038 PLCH2O75038 1416 aa9.47□□□□□ -0.89
SYNE1-213ENST00000448038 CASC1Q6TDU7 716 aa9.47□□□□□ -0.89
SYNE1-213ENST00000448038 GGNBP2Q9H3C7 697 aa9.47□□□□□ -0.89
SYNE1-213ENST00000448038 CNTLNQ9NXG0 1405 aa9.47□□□□□ -0.89
SYNE1-213ENST00000448038 AEBP2Q6ZN18 517 aaPredicted RBP9.46□□□□□ -0.89
SYNE1-213ENST00000448038 DIAPH1O60610 1272 aaKnown RBP9.46□□□□□ -0.89
SYNE1-213ENST00000448038 STK31Q9BXU1 1019 aa9.46□□□□□ -0.89
SYNE1-213ENST00000448038 SMC4Q9NTJ3 1288 aa9.46□□□□□ -0.89
SYNE1-213ENST00000448038 CHMP4AQ9BY43 222 aa9.46□□□□□ -0.9
SYNE1-213ENST00000448038 WDR7Q9Y4E6 1490 aa9.46□□□□□ -0.9
SYNE1-213ENST00000448038 SLC26A8Q96RN1 970 aa9.46□□□□□ -0.9
SYNE1-213ENST00000448038 ZNF330Q9Y3S2 320 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-213ENST00000448038 ANKLE2Q86XL3 938 aa9.45□□□□□ -0.9
SYNE1-213ENST00000448038 PROSER2Q86WR7 435 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-213ENST00000448038 ITPRIPQ8IWB1 547 aa9.45□□□□□ -0.9
SYNE1-213ENST00000448038 DHX29Q7Z478 1369 aaKnown RBP9.44□□□□□ -0.9
SYNE1-213ENST00000448038 APAF1O14727 1248 aa9.44□□□□□ -0.9
SYNE1-213ENST00000448038 EVA1CP58658 441 aa9.44□□□□□ -0.9
SYNE1-213ENST00000448038 DISP1Q96F81 1524 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms