RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 ARHGAP5Q13017 1502 aa12.78□□□□□ -0.36
KLHL3-202ENST00000447439 KDM5DQ9BY66 1539 aa12.78□□□□□ -0.36
KLHL3-202ENST00000447439 NUDCQ9Y266 331 aa12.77□□□□□ -0.36
KLHL3-202ENST00000447439 TTC37Q6PGP7 1564 aa12.77□□□□□ -0.36
KLHL3-202ENST00000447439 CDC42BPBQ9Y5S2 1711 aa12.77□□□□□ -0.37
KLHL3-202ENST00000447439 CCDC144AA2RUR9 1427 aa12.77□□□□□ -0.37
KLHL3-202ENST00000447439 CC2D1BQ5T0F9 858 aaKnown RBP12.76□□□□□ -0.37
KLHL3-202ENST00000447439 PLEKHH2Q8IVE3 1493 aa12.76□□□□□ -0.37
KLHL3-202ENST00000447439 ARHGEF5Q12774 1597 aa12.75□□□□□ -0.37
KLHL3-202ENST00000447439 PLA2R1Q13018 1463 aa12.75□□□□□ -0.37
KLHL3-202ENST00000447439 SMG6Q86US8 1419 aaKnown RBP12.75□□□□□ -0.37
KLHL3-202ENST00000447439 ARHGEF12Q9NZN5 1544 aa12.74□□□□□ -0.37
KLHL3-202ENST00000447439 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.74□□□□□ -0.37
KLHL3-202ENST00000447439 PRAG1Q86YV5 1406 aa12.73□□□□□ -0.37
KLHL3-202ENST00000447439 PREX2Q70Z35 1606 aa12.73□□□□□ -0.37
KLHL3-202ENST00000447439 ARID4BQ4LE39 1312 aaPredicted RBP12.73□□□□□ -0.37
KLHL3-202ENST00000447439 CHD1O14646 1710 aa12.73□□□□□ -0.37
KLHL3-202ENST00000447439 MYBBP1AQ9BQG0 1328 aaKnown RBP12.73□□□□□ -0.37
KLHL3-202ENST00000447439 DISP3Q9P2K9 1392 aa12.72□□□□□ -0.37
KLHL3-202ENST00000447439 ERICH6BQ5W0A0 696 aa12.72□□□□□ -0.37
KLHL3-202ENST00000447439 A2MP01023 1474 aa12.71□□□□□ -0.37
KLHL3-202ENST00000447439 CCDC136Q96JN2 1154 aa12.71□□□□□ -0.38
KLHL3-202ENST00000447439 AFAP1Q8N556 730 aa12.69□□□□□ -0.38
KLHL3-202ENST00000447439 PANK3Q9H999 370 aa12.69□□□□□ -0.38
KLHL3-202ENST00000447439 RSPH4AQ5TD94 716 aa12.69□□□□□ -0.38
KLHL3-202ENST00000447439 CDCA7LQ96GN5 454 aa12.69□□□□□ -0.38
KLHL3-202ENST00000447439 RALBP1Q15311 655 aa12.68□□□□□ -0.38
KLHL3-202ENST00000447439 TESK2Q96S53 571 aa12.68□□□□□ -0.38
KLHL3-202ENST00000447439 FANCIQ9NVI1 1328 aa12.68□□□□□ -0.38
KLHL3-202ENST00000447439 PER1O15534 1290 aaPredicted RBP12.68□□□□□ -0.38
KLHL3-202ENST00000447439 BRD4O60885 1362 aaPredicted RBP12.67□□□□□ -0.38
KLHL3-202ENST00000447439 LRPPRCP42704 1394 aaKnown RBP12.67□□□□□ -0.38
KLHL3-202ENST00000447439 KTN1Q86UP2 1357 aaKnown RBP12.67□□□□□ -0.38
KLHL3-202ENST00000447439 TRAPPC8Q9Y2L5 1435 aa12.67□□□□□ -0.38
KLHL3-202ENST00000447439 ERICH6Q7L0X2 663 aa12.67□□□□□ -0.38
KLHL3-202ENST00000447439 TRPM1Q7Z4N2 1603 aa12.67□□□□□ -0.38
KLHL3-202ENST00000447439 NLRP13Q86W25 1043 aa12.65□□□□□ -0.38
KLHL3-202ENST00000447439 EXOC6Q8TAG9 804 aa12.65□□□□□ -0.38
KLHL3-202ENST00000447439 MYT1LQ9UL68 1186 aa12.65□□□□□ -0.38
KLHL3-202ENST00000447439 RNF123Q5XPI4 1314 aa12.65□□□□□ -0.38
KLHL3-202ENST00000447439 MAST1Q9Y2H9 1570 aa12.65□□□□□ -0.38
KLHL3-202ENST00000447439 E9PCH4 1651 aa12.65□□□□□ -0.38
KLHL3-202ENST00000447439 ABCC2Q92887 1545 aa12.64□□□□□ -0.39
KLHL3-202ENST00000447439 PLIN1O60240 522 aa12.64□□□□□ -0.39
KLHL3-202ENST00000447439 EFCAB2Q5VUJ9 269 aa12.64□□□□□ -0.39
KLHL3-202ENST00000447439 PARD3Q8TEW0 1356 aa12.64□□□□□ -0.39
KLHL3-202ENST00000447439 UNC13BO14795 1591 aa12.64□□□□□ -0.39
KLHL3-202ENST00000447439 ERBINQ96RT1 1412 aa12.63□□□□□ -0.39
KLHL3-202ENST00000447439 SHROOM2Q13796 1616 aa12.63□□□□□ -0.39
KLHL3-202ENST00000447439 RRP1P56182 461 aaKnown RBP12.63□□□□□ -0.39
KLHL3-202ENST00000447439 RCAN3Q9UKA8 241 aa12.62□□□□□ -0.39
KLHL3-202ENST00000447439 TMF1P82094 1093 aa12.62□□□□□ -0.39
KLHL3-202ENST00000447439 SKAP1Q86WV1 359 aa12.62□□□□□ -0.39
KLHL3-202ENST00000447439 MYO5CQ9NQX4 1742 aa12.62□□□□□ -0.39
KLHL3-202ENST00000447439 COL17A1Q9UMD9 1497 aaPredicted RBP12.62□□□□□ -0.39
KLHL3-202ENST00000447439 SPAG9O60271 1321 aaKnown RBP12.61□□□□□ -0.39
KLHL3-202ENST00000447439 PLCH2O75038 1416 aa12.61□□□□□ -0.39
KLHL3-202ENST00000447439 PLXNC1O60486 1568 aa12.61□□□□□ -0.39
KLHL3-202ENST00000447439 GPRASP1Q5JY77 1395 aa12.61□□□□□ -0.39
KLHL3-202ENST00000447439 DUOX2Q9NRD8 1548 aa12.6□□□□□ -0.39
KLHL3-202ENST00000447439 PAK3O75914 559 aaPredicted RBP12.6□□□□□ -0.39
KLHL3-202ENST00000447439 IQGAP3Q86VI3 1631 aa12.6□□□□□ -0.39
KLHL3-202ENST00000447439 CLASP1Q7Z460 1538 aa12.59□□□□□ -0.39
KLHL3-202ENST00000447439 LAMC1P11047 1609 aa12.59□□□□□ -0.39
KLHL3-202ENST00000447439 PRDM15P57071 1507 aaPredicted RBP12.59□□□□□ -0.39
KLHL3-202ENST00000447439 ZCCHC11Q5TAX3 1644 aaKnown RBP12.58□□□□□ -0.39
KLHL3-202ENST00000447439 ADAMTS8Q9UP79 889 aa12.57□□□□□ -0.4
KLHL3-202ENST00000447439 KIF3BO15066 747 aa12.56□□□□□ -0.4
KLHL3-202ENST00000447439 MAGI2Q86UL8 1455 aa12.56□□□□□ -0.4
KLHL3-202ENST00000447439 NPM2Q86SE8 214 aaKnown RBP12.56□□□□□ -0.4
KLHL3-202ENST00000447439 ABCC1P33527 1531 aa12.56□□□□□ -0.4
KLHL3-202ENST00000447439 NBR1Q14596 966 aa12.55□□□□□ -0.4
KLHL3-202ENST00000447439 EIF2AK4Q9P2K8 1649 aaKnown RBP12.55□□□□□ -0.4
KLHL3-202ENST00000447439 C20orf194Q5TEA3 1177 aa12.54□□□□□ -0.4
KLHL3-202ENST00000447439 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
KLHL3-202ENST00000447439 ATP10AO60312 1499 aa12.54□□□□□ -0.4
KLHL3-202ENST00000447439 CCDC146Q8IYE0 955 aa12.54□□□□□ -0.4
KLHL3-202ENST00000447439 SENP3Q9H4L4 574 aaPredicted RBP12.54□□□□□ -0.4
KLHL3-202ENST00000447439 PPP2R1AP30153 589 aa12.53□□□□□ -0.4
KLHL3-202ENST00000447439 CFAP70Q5T0N1 1121 aa12.53□□□□□ -0.4
KLHL3-202ENST00000447439 OSCARQ8IYS5 282 aa12.53□□□□□ -0.4
KLHL3-202ENST00000447439 CRBNQ96SW2 442 aa12.53□□□□□ -0.4
KLHL3-202ENST00000447439 UGGT1Q9NYU2 1555 aa12.52□□□□□ -0.4
KLHL3-202ENST00000447439 NOP58Q9Y2X3 529 aaKnown RBP12.52□□□□□ -0.41
KLHL3-202ENST00000447439 SCAPERQ9BY12 1400 aa12.52□□□□□ -0.41
KLHL3-202ENST00000447439 WDR7Q9Y4E6 1490 aa12.52□□□□□ -0.41
KLHL3-202ENST00000447439 CHGAP10645 457 aaKnown RBP12.51□□□□□ -0.41
KLHL3-202ENST00000447439 AMER1Q5JTC6 1135 aaPredicted RBP12.51□□□□□ -0.41
KLHL3-202ENST00000447439 ADGRF5Q8IZF2 1346 aa12.5□□□□□ -0.41
KLHL3-202ENST00000447439 WDR43Q15061 677 aaKnown RBP eCLIP12.5□□□□□ -0.41
KLHL3-202ENST00000447439 ZFYVE16Q7Z3T8 1539 aa12.5□□□□□ -0.41
KLHL3-202ENST00000447439 MADDQ8WXG6 1647 aa12.5□□□□□ -0.41
KLHL3-202ENST00000447439 RNF17Q9BXT8 1623 aaKnown RBP12.5□□□□□ -0.41
KLHL3-202ENST00000447439 BLMP54132 1417 aaPredicted RBP12.5□□□□□ -0.41
KLHL3-202ENST00000447439 CLTCL1P53675 1640 aa12.49□□□□□ -0.41
KLHL3-202ENST00000447439 PLEKHH1Q9ULM0 1364 aa12.49□□□□□ -0.41
KLHL3-202ENST00000447439 PDE3BQ13370 1112 aa12.49□□□□□ -0.41
KLHL3-202ENST00000447439 FANCAO15360 1455 aa12.48□□□□□ -0.41
KLHL3-202ENST00000447439 WASHC2CQ9Y4E1 1318 aa12.48□□□□□ -0.41
KLHL3-202ENST00000447439 ANP32AP39687 249 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms