RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 ST20-MTHFSA0A0A6YYL1 179 aa25.72■■□□□ 1.71
SDCBP-204ENST00000447182 CNGB1Q14028 1251 aaPredicted RBP25.7■■□□□ 1.71
SDCBP-204ENST00000447182 CCDC136Q96JN2 1154 aa25.7■■□□□ 1.71
SDCBP-204ENST00000447182 DCAF11Q8TEB1 546 aa25.66■■□□□ 1.7
SDCBP-204ENST00000447182 FAM135AQ9P2D6 1515 aa25.66■■□□□ 1.7
SDCBP-204ENST00000447182 TRPM1Q7Z4N2 1603 aa25.65■■□□□ 1.7
SDCBP-204ENST00000447182 FBLN2P98095 1184 aa25.65■■□□□ 1.7
SDCBP-204ENST00000447182 ERCC6Q03468 1493 aa25.65■■□□□ 1.7
SDCBP-204ENST00000447182 KDM2AQ9Y2K7 1162 aa25.64■■□□□ 1.7
SDCBP-204ENST00000447182 CCDC141Q6ZP82 1450 aa25.64■■□□□ 1.7
SDCBP-204ENST00000447182 PRAG1Q86YV5 1406 aa25.62■■□□□ 1.69
SDCBP-204ENST00000447182 NOP58Q9Y2X3 529 aaKnown RBP25.62■■□□□ 1.69
SDCBP-204ENST00000447182 SAMD9LQ8IVG5 1584 aa25.62■■□□□ 1.69
SDCBP-204ENST00000447182 HNRNPMP52272 730 aaKnown RBP eCLIP25.61■■□□□ 1.69
SDCBP-204ENST00000447182 RSPH4AQ5TD94 716 aa25.61■■□□□ 1.69
SDCBP-204ENST00000447182 PREX2Q70Z35 1606 aa25.61■■□□□ 1.69
SDCBP-204ENST00000447182 PARD3Q8TEW0 1356 aa25.6■■□□□ 1.69
SDCBP-204ENST00000447182 CDC42BPBQ9Y5S2 1711 aa25.6■■□□□ 1.69
SDCBP-204ENST00000447182 GPRASP1Q5JY77 1395 aa25.59■■□□□ 1.69
SDCBP-204ENST00000447182 LAMC1P11047 1609 aa25.59■■□□□ 1.69
SDCBP-204ENST00000447182 NLRP13Q86W25 1043 aa25.58■■□□□ 1.69
SDCBP-204ENST00000447182 CCDC144AA2RUR9 1427 aa25.56■■□□□ 1.68
SDCBP-204ENST00000447182 UNC13BO14795 1591 aa25.56■■□□□ 1.68
SDCBP-204ENST00000447182 MAST1Q9Y2H9 1570 aa25.56■■□□□ 1.68
SDCBP-204ENST00000447182 PDE3BQ13370 1112 aa25.55■■□□□ 1.68
SDCBP-204ENST00000447182 RRP1P56182 461 aaKnown RBP25.55■■□□□ 1.68
SDCBP-204ENST00000447182 INSRP06213 1382 aa25.54■■□□□ 1.68
SDCBP-204ENST00000447182 WASHC2CQ9Y4E1 1318 aa25.53■■□□□ 1.68
SDCBP-204ENST00000447182 ZMYM4Q5VZL5 1548 aa25.53■■□□□ 1.68
SDCBP-204ENST00000447182 PER1O15534 1290 aaPredicted RBP25.52■■□□□ 1.68
SDCBP-204ENST00000447182 COL17A1Q9UMD9 1497 aaPredicted RBP25.51■■□□□ 1.67
SDCBP-204ENST00000447182 ANP32AP39687 249 aaKnown RBP25.51■■□□□ 1.67
SDCBP-204ENST00000447182 PRDM15P57071 1507 aaPredicted RBP25.51■■□□□ 1.67
SDCBP-204ENST00000447182 PLA2R1Q13018 1463 aa25.51■■□□□ 1.67
SDCBP-204ENST00000447182 IPO9Q96P70 1041 aaKnown RBP25.5■■□□□ 1.67
SDCBP-204ENST00000447182 SENP3-EIF4A1A0A087X0R7 540 aa25.49■■□□□ 1.67
SDCBP-204ENST00000447182 RCAN3Q9UKA8 241 aa25.49■■□□□ 1.67
SDCBP-204ENST00000447182 A2MP01023 1474 aa25.49■■□□□ 1.67
SDCBP-204ENST00000447182 PAK3O75914 559 aaPredicted RBP25.48■■□□□ 1.67
SDCBP-204ENST00000447182 IQGAP3Q86VI3 1631 aa25.47■■□□□ 1.67
SDCBP-204ENST00000447182 EIF2AK4Q9P2K8 1649 aaKnown RBP25.47■■□□□ 1.67
SDCBP-204ENST00000447182 PLXNC1O60486 1568 aa25.46■■□□□ 1.67
SDCBP-204ENST00000447182 SYCP2Q9BX26 1530 aa25.45■■□□□ 1.67
SDCBP-204ENST00000447182 ATP10AO60312 1499 aa25.44■■□□□ 1.66
SDCBP-204ENST00000447182 NBPF1Q3BBV0 1214 aa25.44■■□□□ 1.66
SDCBP-204ENST00000447182 MYO5CQ9NQX4 1742 aa25.43■■□□□ 1.66
SDCBP-204ENST00000447182 EXOC6Q8TAG9 804 aa25.43■■□□□ 1.66
SDCBP-204ENST00000447182 TESK2Q96S53 571 aa25.43■■□□□ 1.66
SDCBP-204ENST00000447182 BLMP54132 1417 aaPredicted RBP25.42■■□□□ 1.66
SDCBP-204ENST00000447182 TCERG1O14776 1098 aaKnown RBP25.41■■□□□ 1.66
SDCBP-204ENST00000447182 DISP3Q9P2K9 1392 aa25.4■■□□□ 1.66
SDCBP-204ENST00000447182 TTC37Q6PGP7 1564 aa25.39■■□□□ 1.66
SDCBP-204ENST00000447182 ARHGAP5Q13017 1502 aa25.39■■□□□ 1.65
SDCBP-204ENST00000447182 MAGI2Q86UL8 1455 aa25.39■■□□□ 1.65
SDCBP-204ENST00000447182 PLEKHH2Q8IVE3 1493 aa25.39■■□□□ 1.65
SDCBP-204ENST00000447182 ERBINQ96RT1 1412 aa25.39■■□□□ 1.65
SDCBP-204ENST00000447182 DEKP35659 375 aaKnown RBP25.39■■□□□ 1.65
SDCBP-204ENST00000447182 RGL3Q3MIN7 710 aa25.39■■□□□ 1.65
SDCBP-204ENST00000447182 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.37■■□□□ 1.65
SDCBP-204ENST00000447182 ZBTB47Q9UFB7 747 aaPredicted RBP25.37■■□□□ 1.65
SDCBP-204ENST00000447182 DUOX2Q9NRD8 1548 aa25.36■■□□□ 1.65
SDCBP-204ENST00000447182 RNF17Q9BXT8 1623 aaKnown RBP25.36■■□□□ 1.65
SDCBP-204ENST00000447182 MS4A1P11836 297 aa25.34■■□□□ 1.65
SDCBP-204ENST00000447182 TMF1P82094 1093 aa25.33■■□□□ 1.64
SDCBP-204ENST00000447182 PANK3Q9H999 370 aa25.32■■□□□ 1.64
SDCBP-204ENST00000447182 SALL2Q9Y467 1007 aaPredicted RBP25.32■■□□□ 1.64
SDCBP-204ENST00000447182 CDCA7LQ96GN5 454 aa25.31■■□□□ 1.64
SDCBP-204ENST00000447182 CC2D1BQ5T0F9 858 aaKnown RBP25.3■■□□□ 1.64
SDCBP-204ENST00000447182 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.3■■□□□ 1.64
SDCBP-204ENST00000447182 NBR1Q14596 966 aa25.3■■□□□ 1.64
SDCBP-204ENST00000447182 SHROOM2Q13796 1616 aa25.28■■□□□ 1.64
SDCBP-204ENST00000447182 PDE4AP27815 886 aa25.27■■□□□ 1.64
SDCBP-204ENST00000447182 BACH2Q9BYV9 841 aa25.26■■□□□ 1.63
SDCBP-204ENST00000447182 ABCC2Q92887 1545 aa25.24■■□□□ 1.63
SDCBP-204ENST00000447182 WDR7Q9Y4E6 1490 aa25.22■■□□□ 1.63
SDCBP-204ENST00000447182 IQGAP1P46940 1657 aa25.22■■□□□ 1.63
SDCBP-204ENST00000447182 MADDQ8WXG6 1647 aa25.21■■□□□ 1.63
SDCBP-204ENST00000447182 CHD1O14646 1710 aa25.19■■□□□ 1.62
SDCBP-204ENST00000447182 RTL5Q5HYW3 569 aaPredicted RBP25.19■■□□□ 1.62
SDCBP-204ENST00000447182 PLCH2O75038 1416 aa25.18■■□□□ 1.62
SDCBP-204ENST00000447182 PLIN1O60240 522 aa25.16■■□□□ 1.62
SDCBP-204ENST00000447182 CRBNQ96SW2 442 aa25.16■■□□□ 1.62
SDCBP-204ENST00000447182 SYNMO15061 1565 aa25.16■■□□□ 1.62
SDCBP-204ENST00000447182 STAC3Q96MF2 364 aa25.16■■□□□ 1.62
SDCBP-204ENST00000447182 ADAMTS8Q9UP79 889 aa25.15■■□□□ 1.62
SDCBP-204ENST00000447182 SPHKAPQ2M3C7 1700 aa25.15■■□□□ 1.62
SDCBP-204ENST00000447182 TRPM2O94759 1503 aa25.14■■□□□ 1.61
SDCBP-204ENST00000447182 ABCC1P33527 1531 aa25.14■■□□□ 1.61
SDCBP-204ENST00000447182 SCAPERQ9BY12 1400 aa25.13■■□□□ 1.61
SDCBP-204ENST00000447182 PPP2R1AP30153 589 aa25.13■■□□□ 1.61
SDCBP-204ENST00000447182 NPM2Q86SE8 214 aaKnown RBP25.13■■□□□ 1.61
SDCBP-204ENST00000447182 KNSTRNQ9Y448 316 aa25.13■■□□□ 1.61
SDCBP-204ENST00000447182 CLASP1Q7Z460 1538 aa25.13■■□□□ 1.61
SDCBP-204ENST00000447182 CEP152O94986 1710 aa25.12■■□□□ 1.61
SDCBP-204ENST00000447182 CDCA8Q53HL2 280 aa25.12■■□□□ 1.61
SDCBP-204ENST00000447182 AMER1Q5JTC6 1135 aaPredicted RBP25.12■■□□□ 1.61
SDCBP-204ENST00000447182 SCAF11Q99590 1463 aaKnown RBP25.11■■□□□ 1.61
SDCBP-204ENST00000447182 EFCAB2Q5VUJ9 269 aa25.1■■□□□ 1.61
SDCBP-204ENST00000447182 ZNF521Q96K83 1311 aa25.1■■□□□ 1.61
SDCBP-204ENST00000447182 PIK3C2GO75747 1445 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms