RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 TOMM22Q9NS69 142 aa12.7□□□□□ -0.38
COL4A4-201ENST00000396625 RB1CC1Q8TDY2 1594 aa12.7□□□□□ -0.38
COL4A4-201ENST00000396625 DDX49Q9Y6V7 483 aaKnown RBP12.69□□□□□ -0.38
COL4A4-201ENST00000396625 KANK1Q14678 1352 aa12.69□□□□□ -0.38
COL4A4-201ENST00000396625 MCTP1Q6DN14 999 aa12.69□□□□□ -0.38
COL4A4-201ENST00000396625 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.69□□□□□ -0.38
COL4A4-201ENST00000396625 CHMP7Q8WUX9 453 aaPredicted RBP12.68□□□□□ -0.38
COL4A4-201ENST00000396625 FOXD4L6Q3SYB3 417 aaPredicted RBP12.68□□□□□ -0.38
COL4A4-201ENST00000396625 FOXD4L3Q6VB84 417 aaPredicted RBP12.68□□□□□ -0.38
COL4A4-201ENST00000396625 CNKSR2Q8WXI2 1034 aa12.68□□□□□ -0.38
COL4A4-201ENST00000396625 STK31Q9BXU1 1019 aa12.67□□□□□ -0.38
COL4A4-201ENST00000396625 PLCD4Q9BRC7 762 aa12.67□□□□□ -0.38
COL4A4-201ENST00000396625 HOOK1Q9UJC3 728 aaKnown RBP12.67□□□□□ -0.38
COL4A4-201ENST00000396625 NAP1L1P55209 391 aaKnown RBP12.67□□□□□ -0.38
COL4A4-201ENST00000396625 CCER2I3L3R5 266 aa12.67□□□□□ -0.38
COL4A4-201ENST00000396625 AKAP17AQ02040 695 aaKnown RBP12.67□□□□□ -0.38
COL4A4-201ENST00000396625 FAM184AQ8NB25 1140 aa12.66□□□□□ -0.38
COL4A4-201ENST00000396625 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.66□□□□□ -0.38
COL4A4-201ENST00000396625 SMC4Q9NTJ3 1288 aa12.66□□□□□ -0.38
COL4A4-201ENST00000396625 MTERF4Q7Z6M4 381 aaKnown RBP12.66□□□□□ -0.38
COL4A4-201ENST00000396625 G3V3G9 751 aa12.66□□□□□ -0.38
COL4A4-201ENST00000396625 DCAF8Q5TAQ9 597 aa12.66□□□□□ -0.38
COL4A4-201ENST00000396625 CFDP1Q9UEE9 299 aaPredicted RBP12.66□□□□□ -0.38
COL4A4-201ENST00000396625 CCDC66A2RUB6 948 aa12.65□□□□□ -0.38
COL4A4-201ENST00000396625 HSP90AB3PQ58FF7 597 aa12.65□□□□□ -0.38
COL4A4-201ENST00000396625 IFT57Q9NWB7 429 aa12.64□□□□□ -0.39
COL4A4-201ENST00000396625 MNS1Q8NEH6 495 aa12.64□□□□□ -0.39
COL4A4-201ENST00000396625 HDAC5Q9UQL6 1122 aa12.64□□□□□ -0.39
COL4A4-201ENST00000396625 CT47A1Q5JQC4 288 aaPredicted RBP12.64□□□□□ -0.39
COL4A4-201ENST00000396625 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
COL4A4-201ENST00000396625 PKNOX2Q96KN3 472 aa12.64□□□□□ -0.39
COL4A4-201ENST00000396625 ODF2Q5BJF6 829 aa12.63□□□□□ -0.39
COL4A4-201ENST00000396625 FAM43AQ8N2R8 423 aa12.63□□□□□ -0.39
COL4A4-201ENST00000396625 CAGE1Q8TC20 777 aa12.63□□□□□ -0.39
COL4A4-201ENST00000396625 EIF3AQ14152 1382 aaKnown RBP12.63□□□□□ -0.39
COL4A4-201ENST00000396625 STK11IPQ8N1F8 1099 aa12.62□□□□□ -0.39
COL4A4-201ENST00000396625 CHMP4CQ96CF2 233 aa12.62□□□□□ -0.39
COL4A4-201ENST00000396625 DCAF11Q8TEB1 546 aa12.62□□□□□ -0.39
COL4A4-201ENST00000396625 CHMP4AQ9BY43 222 aa12.62□□□□□ -0.39
COL4A4-201ENST00000396625 MYO6Q9UM54 1294 aa12.62□□□□□ -0.39
COL4A4-201ENST00000396625 ROCK2O75116 1388 aaKnown RBP12.62□□□□□ -0.39
COL4A4-201ENST00000396625 U2AF1L5P0DN76 240 aaPredicted RBP12.62□□□□□ -0.39
COL4A4-201ENST00000396625 U2AF1Q01081 240 aaKnown RBP eCLIP12.62□□□□□ -0.39
COL4A4-201ENST00000396625 SAFB2Q14151 953 aaKnown RBP eCLIP12.62□□□□□ -0.39
COL4A4-201ENST00000396625 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
COL4A4-201ENST00000396625 CEP164Q9UPV0 1460 aa12.61□□□□□ -0.39
COL4A4-201ENST00000396625 FRAT2O75474 233 aaPredicted RBP12.61□□□□□ -0.39
COL4A4-201ENST00000396625 SLC4A10Q6U841 1118 aa12.61□□□□□ -0.39
COL4A4-201ENST00000396625 ZRSR2Q15696 482 aaKnown RBP12.6□□□□□ -0.39
COL4A4-201ENST00000396625 HSP90AB2PQ58FF8 381 aa12.6□□□□□ -0.39
COL4A4-201ENST00000396625 HDGFL2Q7Z4V5 671 aaPredicted RBP12.6□□□□□ -0.39
COL4A4-201ENST00000396625 BCL11BQ9C0K0 894 aaPredicted RBP12.6□□□□□ -0.39
COL4A4-201ENST00000396625 SIN3AQ96ST3 1273 aa12.6□□□□□ -0.39
COL4A4-201ENST00000396625 LEKR1Q6ZMV7 388 aa12.6□□□□□ -0.39
COL4A4-201ENST00000396625 CCDC173Q0VFZ6 552 aa12.59□□□□□ -0.39
COL4A4-201ENST00000396625 FBXW7Q969H0 707 aa12.59□□□□□ -0.39
COL4A4-201ENST00000396625 EPS15P42566 896 aa12.59□□□□□ -0.39
COL4A4-201ENST00000396625 CENPJQ9HC77 1338 aaPredicted RBP12.59□□□□□ -0.39
COL4A4-201ENST00000396625 TRIM29Q14134 588 aa12.59□□□□□ -0.39
COL4A4-201ENST00000396625 TSPYL1Q9H0U9 437 aa12.59□□□□□ -0.39
COL4A4-201ENST00000396625 CCDC47Q96A33 483 aaKnown RBP12.59□□□□□ -0.39
COL4A4-201ENST00000396625 PAK3O75914 559 aaPredicted RBP12.58□□□□□ -0.39
COL4A4-201ENST00000396625 RILPL2Q969X0 211 aa12.58□□□□□ -0.4
COL4A4-201ENST00000396625 RALBP1Q15311 655 aa12.58□□□□□ -0.4
COL4A4-201ENST00000396625 TNIKQ9UKE5 1360 aa12.57□□□□□ -0.4
COL4A4-201ENST00000396625 NACADO15069 1562 aa12.57□□□□□ -0.4
COL4A4-201ENST00000396625 BICD2Q8TD16 824 aa12.57□□□□□ -0.4
COL4A4-201ENST00000396625 FHAD1B1AJZ9 1412 aa12.57□□□□□ -0.4
COL4A4-201ENST00000396625 SYNE3Q6ZMZ3 975 aa12.57□□□□□ -0.4
COL4A4-201ENST00000396625 CGNL1Q0VF96 1302 aa12.57□□□□□ -0.4
COL4A4-201ENST00000396625 ERCC4Q92889 916 aaPredicted RBP12.57□□□□□ -0.4
COL4A4-201ENST00000396625 CSB-PGBD3P0DP91 1061 aa12.56□□□□□ -0.4
COL4A4-201ENST00000396625 INCENPQ9NQS7 918 aa12.56□□□□□ -0.4
COL4A4-201ENST00000396625 EIF4G1Q04637 1599 aaKnown RBP12.56□□□□□ -0.4
COL4A4-201ENST00000396625 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.56□□□□□ -0.4
COL4A4-201ENST00000396625 DYDC1Q8WWB3 177 aa12.56□□□□□ -0.4
COL4A4-201ENST00000396625 CCDC43Q96MW1 224 aaKnown RBP12.56□□□□□ -0.4
COL4A4-201ENST00000396625 DIAPH3Q9NSV4 1193 aa12.56□□□□□ -0.4
COL4A4-201ENST00000396625 CCDC9Q9Y3X0 531 aaKnown RBP12.56□□□□□ -0.4
COL4A4-201ENST00000396625 NAT10Q9H0A0 1025 aaKnown RBP12.56□□□□□ -0.4
COL4A4-201ENST00000396625 FAM161AQ3B820 660 aa12.55□□□□□ -0.4
COL4A4-201ENST00000396625 PODXL2Q9NZ53 605 aa12.55□□□□□ -0.4
COL4A4-201ENST00000396625 CCDC39Q9UFE4 941 aa12.55□□□□□ -0.4
COL4A4-201ENST00000396625 KIAA0754O94854 1291 aa12.55□□□□□ -0.4
COL4A4-201ENST00000396625 TRIM34Q9BYJ4 488 aa12.55□□□□□ -0.4
COL4A4-201ENST00000396625 NEXNQ0ZGT2 675 aa12.55□□□□□ -0.4
COL4A4-201ENST00000396625 SASS6Q6UVJ0 657 aa12.55□□□□□ -0.4
COL4A4-201ENST00000396625 AXDND1Q5T1B0 1012 aaPredicted RBP12.55□□□□□ -0.4
COL4A4-201ENST00000396625 RAD21O60216 631 aa12.54□□□□□ -0.4
COL4A4-201ENST00000396625 CLUAP1Q96AJ1 413 aa12.54□□□□□ -0.4
COL4A4-201ENST00000396625 PHLDB1Q86UU1 1377 aa12.54□□□□□ -0.4
COL4A4-201ENST00000396625 GOLGA6L7A0A1B0GV03 622 aa12.54□□□□□ -0.4
COL4A4-201ENST00000396625 AMOTL1Q8IY63 956 aa12.54□□□□□ -0.4
COL4A4-201ENST00000396625 CCNB3Q8WWL7 1395 aa12.54□□□□□ -0.4
COL4A4-201ENST00000396625 GOLGA6L10A6NI86 522 aa12.53□□□□□ -0.4
COL4A4-201ENST00000396625 LRRFIP1Q32MZ4 808 aaKnown RBP12.53□□□□□ -0.4
COL4A4-201ENST00000396625 ZFYVE27Q5T4F4 411 aa12.53□□□□□ -0.4
COL4A4-201ENST00000396625 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
COL4A4-201ENST00000396625 MEX3CQ5U5Q3 659 aaKnown RBP12.53□□□□□ -0.4
COL4A4-201ENST00000396625 REC8O95072 547 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms