RNA–Protein interactions for RNA: ENST00000395667.7

CDRT1-203, CMT1A duplicated region transcript 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CDRT1, Length 3,016 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-203ENST00000395667 SHROOM2Q13796 1616 aa12.58□□□□□ -0.4
CDRT1-203ENST00000395667 ABCC2Q92887 1545 aa12.57□□□□□ -0.4
CDRT1-203ENST00000395667 ERCC6L2Q5T890 1561 aa12.57□□□□□ -0.4
CDRT1-203ENST00000395667 ERICH6BQ5W0A0 696 aa12.56□□□□□ -0.4
CDRT1-203ENST00000395667 RBM19Q9Y4C8 960 aaKnown RBP12.56□□□□□ -0.4
CDRT1-203ENST00000395667 PLEKHH2Q8IVE3 1493 aa12.56□□□□□ -0.4
CDRT1-203ENST00000395667 TMC1Q8TDI8 760 aa12.56□□□□□ -0.4
CDRT1-203ENST00000395667 MYO5CQ9NQX4 1742 aa12.55□□□□□ -0.4
CDRT1-203ENST00000395667 PPP4R2Q9NY27 417 aa12.55□□□□□ -0.4
CDRT1-203ENST00000395667 MAST1Q9Y2H9 1570 aa12.55□□□□□ -0.4
CDRT1-203ENST00000395667 EFCAB2Q5VUJ9 269 aa12.53□□□□□ -0.4
CDRT1-203ENST00000395667 PRAG1Q86YV5 1406 aa12.53□□□□□ -0.4
CDRT1-203ENST00000395667 UNC13BO14795 1591 aa12.53□□□□□ -0.4
CDRT1-203ENST00000395667 SENP3-EIF4A1A0A087X0R7 540 aa12.51□□□□□ -0.41
CDRT1-203ENST00000395667 NBPF1Q3BBV0 1214 aa12.51□□□□□ -0.41
CDRT1-203ENST00000395667 PLXNC1O60486 1568 aa12.51□□□□□ -0.41
CDRT1-203ENST00000395667 PLA2R1Q13018 1463 aa12.51□□□□□ -0.41
CDRT1-203ENST00000395667 PNISRQ8TF01 805 aaKnown RBP12.51□□□□□ -0.41
CDRT1-203ENST00000395667 DUOX2Q9NRD8 1548 aa12.51□□□□□ -0.41
CDRT1-203ENST00000395667 PLCH2O75038 1416 aa12.51□□□□□ -0.41
CDRT1-203ENST00000395667 RALBP1Q15311 655 aa12.5□□□□□ -0.41
CDRT1-203ENST00000395667 MYBBP1AQ9BQG0 1328 aaKnown RBP12.5□□□□□ -0.41
CDRT1-203ENST00000395667 A2MP01023 1474 aa12.49□□□□□ -0.41
CDRT1-203ENST00000395667 NUDCQ9Y266 331 aa12.49□□□□□ -0.41
CDRT1-203ENST00000395667 TRPM1Q7Z4N2 1603 aa12.49□□□□□ -0.41
CDRT1-203ENST00000395667 IQGAP3Q86VI3 1631 aa12.49□□□□□ -0.41
CDRT1-203ENST00000395667 SMG6Q86US8 1419 aaKnown RBP12.49□□□□□ -0.41
CDRT1-203ENST00000395667 ZCCHC11Q5TAX3 1644 aaKnown RBP12.48□□□□□ -0.41
CDRT1-203ENST00000395667 ERBINQ96RT1 1412 aa12.48□□□□□ -0.41
CDRT1-203ENST00000395667 B4GALNT3Q6L9W6 998 aa12.48□□□□□ -0.41
CDRT1-203ENST00000395667 KTN1Q86UP2 1357 aaKnown RBP12.48□□□□□ -0.41
CDRT1-203ENST00000395667 BRD4O60885 1362 aaPredicted RBP12.47□□□□□ -0.41
CDRT1-203ENST00000395667 SPAG9O60271 1321 aaKnown RBP12.46□□□□□ -0.41
CDRT1-203ENST00000395667 TRAPPC8Q9Y2L5 1435 aa12.46□□□□□ -0.41
CDRT1-203ENST00000395667 ANP32EQ9BTT0 268 aa12.46□□□□□ -0.41
CDRT1-203ENST00000395667 GPRASP1Q5JY77 1395 aa12.46□□□□□ -0.42
CDRT1-203ENST00000395667 UHRF1BP1LA0JNW5 1464 aa12.45□□□□□ -0.42
CDRT1-203ENST00000395667 ABCC1P33527 1531 aa12.45□□□□□ -0.42
CDRT1-203ENST00000395667 AFAP1Q8N556 730 aa12.44□□□□□ -0.42
CDRT1-203ENST00000395667 E9PCH4 1651 aa12.44□□□□□ -0.42
CDRT1-203ENST00000395667 CLASP1Q7Z460 1538 aa12.44□□□□□ -0.42
CDRT1-203ENST00000395667 MAGI2Q86UL8 1455 aa12.44□□□□□ -0.42
CDRT1-203ENST00000395667 NLRP13Q86W25 1043 aa12.44□□□□□ -0.42
CDRT1-203ENST00000395667 MYT1LQ9UL68 1186 aa12.43□□□□□ -0.42
CDRT1-203ENST00000395667 EIF2AK4Q9P2K8 1649 aaKnown RBP12.43□□□□□ -0.42
CDRT1-203ENST00000395667 ATP10AO60312 1499 aa12.43□□□□□ -0.42
CDRT1-203ENST00000395667 TMF1P82094 1093 aa12.43□□□□□ -0.42
CDRT1-203ENST00000395667 LRPPRCP42704 1394 aaKnown RBP12.42□□□□□ -0.42
CDRT1-203ENST00000395667 DISP3Q9P2K9 1392 aa12.42□□□□□ -0.42
CDRT1-203ENST00000395667 TESK2Q96S53 571 aa12.42□□□□□ -0.42
CDRT1-203ENST00000395667 COL17A1Q9UMD9 1497 aaPredicted RBP12.42□□□□□ -0.42
CDRT1-203ENST00000395667 PRDM15P57071 1507 aaPredicted RBP12.42□□□□□ -0.42
CDRT1-203ENST00000395667 CC2D1BQ5T0F9 858 aaKnown RBP12.42□□□□□ -0.42
CDRT1-203ENST00000395667 PARD3Q8TEW0 1356 aa12.41□□□□□ -0.42
CDRT1-203ENST00000395667 SALL2Q9Y467 1007 aaPredicted RBP12.41□□□□□ -0.42
CDRT1-203ENST00000395667 LAMC1P11047 1609 aa12.4□□□□□ -0.42
CDRT1-203ENST00000395667 PER1O15534 1290 aaPredicted RBP12.4□□□□□ -0.42
CDRT1-203ENST00000395667 PANK3Q9H999 370 aa12.4□□□□□ -0.42
CDRT1-203ENST00000395667 RTEL1-TNFRSF6BF6WH68 1400 aa12.38□□□□□ -0.43
CDRT1-203ENST00000395667 CCDC136Q96JN2 1154 aa12.38□□□□□ -0.43
CDRT1-203ENST00000395667 RNF123Q5XPI4 1314 aa12.38□□□□□ -0.43
CDRT1-203ENST00000395667 WASHC2CQ9Y4E1 1318 aa12.38□□□□□ -0.43
CDRT1-203ENST00000395667 KANK1Q14678 1352 aa12.37□□□□□ -0.43
CDRT1-203ENST00000395667 ZFYVE16Q7Z3T8 1539 aa12.37□□□□□ -0.43
CDRT1-203ENST00000395667 WDR7Q9Y4E6 1490 aa12.36□□□□□ -0.43
CDRT1-203ENST00000395667 ARAP3Q8WWN8 1544 aa12.36□□□□□ -0.43
CDRT1-203ENST00000395667 FANCIQ9NVI1 1328 aa12.36□□□□□ -0.43
CDRT1-203ENST00000395667 KIF3BO15066 747 aa12.36□□□□□ -0.43
CDRT1-203ENST00000395667 FANCAO15360 1455 aa12.35□□□□□ -0.43
CDRT1-203ENST00000395667 TRPM2O94759 1503 aa12.34□□□□□ -0.43
CDRT1-203ENST00000395667 RNF17Q9BXT8 1623 aaKnown RBP12.34□□□□□ -0.43
CDRT1-203ENST00000395667 ATP7AQ04656 1500 aa12.33□□□□□ -0.44
CDRT1-203ENST00000395667 KNSTRNQ9Y448 316 aa12.33□□□□□ -0.44
CDRT1-203ENST00000395667 SCAPERQ9BY12 1400 aa12.33□□□□□ -0.44
CDRT1-203ENST00000395667 PDE3BQ13370 1112 aa12.33□□□□□ -0.44
CDRT1-203ENST00000395667 STAC3Q96MF2 364 aa12.33□□□□□ -0.44
CDRT1-203ENST00000395667 MADDQ8WXG6 1647 aa12.33□□□□□ -0.44
CDRT1-203ENST00000395667 MSH5O43196 834 aa12.32□□□□□ -0.44
CDRT1-203ENST00000395667 SPHKAPQ2M3C7 1700 aa12.32□□□□□ -0.44
CDRT1-203ENST00000395667 CDCA8Q53HL2 280 aa12.32□□□□□ -0.44
CDRT1-203ENST00000395667 ERICH6Q7L0X2 663 aa12.32□□□□□ -0.44
CDRT1-203ENST00000395667 RCAN3Q9UKA8 241 aa12.32□□□□□ -0.44
CDRT1-203ENST00000395667 ADGRL1O94910 1474 aa12.32□□□□□ -0.44
CDRT1-203ENST00000395667 PTPRTO14522 1441 aa12.32□□□□□ -0.44
CDRT1-203ENST00000395667 RRP1P56182 461 aaKnown RBP12.32□□□□□ -0.44
CDRT1-203ENST00000395667 CLTCL1P53675 1640 aa12.31□□□□□ -0.44
CDRT1-203ENST00000395667 CEP152O94986 1710 aa12.31□□□□□ -0.44
CDRT1-203ENST00000395667 TET3O43151 1660 aa12.31□□□□□ -0.44
CDRT1-203ENST00000395667 SCAF11Q99590 1463 aaKnown RBP12.3□□□□□ -0.44
CDRT1-203ENST00000395667 DEPDC5O75140 1603 aa12.3□□□□□ -0.44
CDRT1-203ENST00000395667 ABCA9Q8IUA7 1624 aa12.3□□□□□ -0.44
CDRT1-203ENST00000395667 INO80Q9ULG1 1556 aaPredicted RBP12.29□□□□□ -0.44
CDRT1-203ENST00000395667 CDCA7LQ96GN5 454 aa12.29□□□□□ -0.44
CDRT1-203ENST00000395667 EIF3AQ14152 1382 aaKnown RBP12.29□□□□□ -0.44
CDRT1-203ENST00000395667 IQGAP1P46940 1657 aa12.28□□□□□ -0.44
CDRT1-203ENST00000395667 ASXL2Q76L83 1435 aa12.28□□□□□ -0.44
CDRT1-203ENST00000395667 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.45
CDRT1-203ENST00000395667 WDR43Q15061 677 aaKnown RBP eCLIP12.27□□□□□ -0.45
CDRT1-203ENST00000395667 EXOC6Q8TAG9 804 aa12.27□□□□□ -0.45
CDRT1-203ENST00000395667 BLMP54132 1417 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms