RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 R3HCC1Q9Y3T6 440 aaKnown RBP9.18□□□□□ -0.94
SYNE2-205ENST00000394768 SUPT16HQ9Y5B9 1047 aaKnown RBP9.17□□□□□ -0.94
SYNE2-205ENST00000394768 H3BQV1 296 aa9.17□□□□□ -0.94
SYNE2-205ENST00000394768 IFFO2Q5TF58 517 aa9.17□□□□□ -0.94
SYNE2-205ENST00000394768 GOLGA6L19H0YKK7 550 aa9.17□□□□□ -0.94
SYNE2-205ENST00000394768 RSPH4AQ5TD94 716 aa9.17□□□□□ -0.94
SYNE2-205ENST00000394768 NEXNQ0ZGT2 675 aa9.17□□□□□ -0.94
SYNE2-205ENST00000394768 MLECQ14165 292 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 WWC2Q6AWC2 1192 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 MYO6Q9UM54 1294 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 PES1O00541 588 aaKnown RBP9.16□□□□□ -0.94
SYNE2-205ENST00000394768 TOMM22Q9NS69 142 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 ROCK1Q13464 1354 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 FMN1Q68DA7 1419 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 TRIM29Q14134 588 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 ODF2Q5BJF6 829 aa9.16□□□□□ -0.94
SYNE2-205ENST00000394768 U2AF1L5P0DN76 240 aaPredicted RBP9.15□□□□□ -0.94
SYNE2-205ENST00000394768 U2AF1Q01081 240 aaKnown RBP eCLIP9.15□□□□□ -0.94
SYNE2-205ENST00000394768 ANKRD30AQ9BXX3 1397 aa9.15□□□□□ -0.94
SYNE2-205ENST00000394768 CREBRFQ8IUR6 639 aa9.15□□□□□ -0.95
SYNE2-205ENST00000394768 AMPHP49418 695 aa9.15□□□□□ -0.95
SYNE2-205ENST00000394768 C1orf141Q5JVX7 400 aa9.14□□□□□ -0.95
SYNE2-205ENST00000394768 DDX11L8A8MPP1 907 aa9.14□□□□□ -0.95
SYNE2-205ENST00000394768 NGDNQ8NEJ9 315 aaKnown RBP9.14□□□□□ -0.95
SYNE2-205ENST00000394768 FAM184AQ8NB25 1140 aa9.14□□□□□ -0.95
SYNE2-205ENST00000394768 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.14□□□□□ -0.95
SYNE2-205ENST00000394768 CCDC18Q5T9S5 1454 aa9.14□□□□□ -0.95
SYNE2-205ENST00000394768 CCER2I3L3R5 266 aa9.14□□□□□ -0.95
SYNE2-205ENST00000394768 VPS37DQ86XT2 251 aa9.14□□□□□ -0.95
SYNE2-205ENST00000394768 RUFY2Q8WXA3 655 aa9.14□□□□□ -0.95
SYNE2-205ENST00000394768 TNIKQ9UKE5 1360 aa9.13□□□□□ -0.95
SYNE2-205ENST00000394768 ZRSR2Q15696 482 aaKnown RBP9.13□□□□□ -0.95
SYNE2-205ENST00000394768 CCDC173Q0VFZ6 552 aa9.13□□□□□ -0.95
SYNE2-205ENST00000394768 PDS5BQ9NTI5 1447 aa9.13□□□□□ -0.95
SYNE2-205ENST00000394768 CT47A1Q5JQC4 288 aaPredicted RBP9.13□□□□□ -0.95
SYNE2-205ENST00000394768 EFCAB2Q5VUJ9 269 aa9.13□□□□□ -0.95
SYNE2-205ENST00000394768 TTC5Q8N0Z6 440 aa9.13□□□□□ -0.95
SYNE2-205ENST00000394768 MIER1Q8N108 512 aa9.13□□□□□ -0.95
SYNE2-205ENST00000394768 PDE4CQ08493 712 aa9.12□□□□□ -0.95
SYNE2-205ENST00000394768 SMARCA2P51531 1590 aa9.12□□□□□ -0.95
SYNE2-205ENST00000394768 MEX3CQ5U5Q3 659 aaKnown RBP9.12□□□□□ -0.95
SYNE2-205ENST00000394768 ERICH2A1L162 156 aa9.12□□□□□ -0.95
SYNE2-205ENST00000394768 EVA1CP58658 441 aa9.12□□□□□ -0.95
SYNE2-205ENST00000394768 ACBD3Q9H3P7 528 aa9.12□□□□□ -0.95
SYNE2-205ENST00000394768 DCTN1Q14203 1278 aa9.12□□□□□ -0.95
SYNE2-205ENST00000394768 BECN2A8MW95 431 aa9.12□□□□□ -0.95
SYNE2-205ENST00000394768 GOLGA6L3A6NEY3 463 aa9.11□□□□□ -0.95
SYNE2-205ENST00000394768 SKOR2Q2VWA4 1001 aaPredicted RBP9.11□□□□□ -0.95
SYNE2-205ENST00000394768 GGT6Q6P531 493 aa9.11□□□□□ -0.95
SYNE2-205ENST00000394768 AK7Q96M32 723 aa9.11□□□□□ -0.95
SYNE2-205ENST00000394768 TRDNQ13061 729 aa9.11□□□□□ -0.95
SYNE2-205ENST00000394768 TEX35Q5T0J7 233 aa9.11□□□□□ -0.95
SYNE2-205ENST00000394768 HIRIP3Q9BW71 556 aaPredicted RBP9.11□□□□□ -0.95
SYNE2-205ENST00000394768 RNF20Q5VTR2 975 aa9.11□□□□□ -0.95
SYNE2-205ENST00000394768 APBB1O00213 710 aa9.11□□□□□ -0.95
SYNE2-205ENST00000394768 BRMS1Q9HCU9 246 aa9.1□□□□□ -0.95
SYNE2-205ENST00000394768 ZKSCAN1P17029 563 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-205ENST00000394768 RUFY1Q96T51 708 aa9.1□□□□□ -0.95
SYNE2-205ENST00000394768 STK26Q9P289 416 aa9.1□□□□□ -0.95
SYNE2-205ENST00000394768 DDX58O95786 925 aaKnown RBP9.09□□□□□ -0.95
SYNE2-205ENST00000394768 EPS15P42566 896 aa9.09□□□□□ -0.95
SYNE2-205ENST00000394768 XBP1P17861 261 aa9.08□□□□□ -0.96
SYNE2-205ENST00000394768 SAFB2Q14151 953 aaKnown RBP eCLIP9.08□□□□□ -0.96
SYNE2-205ENST00000394768 REC8O95072 547 aa9.08□□□□□ -0.96
SYNE2-205ENST00000394768 TRIM21P19474 475 aaKnown RBP9.08□□□□□ -0.96
SYNE2-205ENST00000394768 PDE3BQ13370 1112 aa9.08□□□□□ -0.96
SYNE2-205ENST00000394768 PCMTD1Q96MG8 357 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-205ENST00000394768 NOM1Q5C9Z4 860 aaKnown RBP9.08□□□□□ -0.96
SYNE2-205ENST00000394768 SETD5Q9C0A6 1442 aa9.08□□□□□ -0.96
SYNE2-205ENST00000394768 SAFBQ15424 915 aaKnown RBP eCLIP9.08□□□□□ -0.96
SYNE2-205ENST00000394768 CPLX1O14810 134 aa9.08□□□□□ -0.96
SYNE2-205ENST00000394768 MSH5O43196 834 aa9.08□□□□□ -0.96
SYNE2-205ENST00000394768 DIAPH3Q9NSV4 1193 aa9.08□□□□□ -0.96
SYNE2-205ENST00000394768 RCAN3Q9UKA8 241 aa9.07□□□□□ -0.96
SYNE2-205ENST00000394768 NGEFQ8N5V2 710 aa9.07□□□□□ -0.96
SYNE2-205ENST00000394768 CENPJQ9HC77 1338 aaPredicted RBP9.07□□□□□ -0.96
SYNE2-205ENST00000394768 ANKRD18AQ8IVF6 992 aa9.07□□□□□ -0.96
SYNE2-205ENST00000394768 RBM33Q96EV2 1170 aaKnown RBP9.07□□□□□ -0.96
SYNE2-205ENST00000394768 MFAP1P55081 439 aaKnown RBP9.06□□□□□ -0.96
SYNE2-205ENST00000394768 DHX16O60231 1041 aaKnown RBP9.06□□□□□ -0.96
SYNE2-205ENST00000394768 WASHC2CQ9Y4E1 1318 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 TEFQ10587 303 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 CGNL1Q0VF96 1302 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 CCAR1Q8IX12 1150 aaKnown RBP9.06□□□□□ -0.96
SYNE2-205ENST00000394768 SLC4A10Q6U841 1118 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 NAT10Q9H0A0 1025 aaKnown RBP9.06□□□□□ -0.96
SYNE2-205ENST00000394768 DNAI2Q9GZS0 605 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 DESP17661 470 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 TXLNBQ8N3L3 684 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 CUX2O14529 1486 aa9.06□□□□□ -0.96
SYNE2-205ENST00000394768 CCDC191Q8NCU4 936 aa9.05□□□□□ -0.96
SYNE2-205ENST00000394768 DHX8Q14562 1220 aaKnown RBP9.05□□□□□ -0.96
SYNE2-205ENST00000394768 CARMIL1Q5VZK9 1371 aa9.05□□□□□ -0.96
SYNE2-205ENST00000394768 ARGLU1Q9NWB6 273 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-205ENST00000394768 NUP155O75694 1391 aa9.05□□□□□ -0.96
SYNE2-205ENST00000394768 PAF1Q8N7H5 531 aa9.05□□□□□ -0.96
SYNE2-205ENST00000394768 HSP90AB4PQ58FF6 505 aa9.05□□□□□ -0.96
SYNE2-205ENST00000394768 C9orf78Q9NZ63 289 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-205ENST00000394768 RAD21O60216 631 aa9.04□□□□□ -0.96
SYNE2-205ENST00000394768 SPRYD3Q8NCJ5 442 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms