RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 DCAF8L2P0C7V8 631 aa12.34□□□□□ -0.43
SYNE2-205ENST00000394768 PELP1Q8IZL8 1130 aaKnown RBP12.18□□□□□ -0.46
SYNE2-205ENST00000394768 FAM9AQ8IZU1 332 aaPredicted RBP11.96□□□□□ -0.49
SYNE2-205ENST00000394768 APLP2Q06481 763 aa11.71□□□□□ -0.53
SYNE2-205ENST00000394768 CCER1Q8TC90 406 aaPredicted RBP11.6□□□□□ -0.55
SYNE2-205ENST00000394768 SUPT5HO00267 1087 aaKnown RBP11.49□□□□□ -0.57
SYNE2-205ENST00000394768 ERICH6Q7L0X2 663 aa11.42□□□□□ -0.58
SYNE2-205ENST00000394768 NISCHQ9Y2I1 1504 aa11.37□□□□□ -0.59
SYNE2-205ENST00000394768 CENPBP07199 599 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-205ENST00000394768 NEFLP07196 543 aa11.16□□□□□ -0.62
SYNE2-205ENST00000394768 YTHDC1Q96MU7 727 aaKnown RBP11.16□□□□□ -0.62
SYNE2-205ENST00000394768 ZEB1P37275 1124 aaPredicted RBP11.15□□□□□ -0.62
SYNE2-205ENST00000394768 MYT1Q01538 1121 aa11.14□□□□□ -0.63
SYNE2-205ENST00000394768 SHROOM4Q9ULL8 1493 aa11.12□□□□□ -0.63
SYNE2-205ENST00000394768 EHMT2Q96KQ7 1210 aa11.11□□□□□ -0.63
SYNE2-205ENST00000394768 DAXXQ9UER7 740 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-205ENST00000394768 ATP1B4Q9UN42 357 aaPredicted RBP10.99□□□□□ -0.65
SYNE2-205ENST00000394768 PCGF6Q9BYE7 350 aa10.88□□□□□ -0.67
SYNE2-205ENST00000394768 MYT1LQ9UL68 1186 aa10.85□□□□□ -0.67
SYNE2-205ENST00000394768 UBTFP17480 764 aaKnown RBP10.84□□□□□ -0.67
SYNE2-205ENST00000394768 TRIM41Q8WV44 630 aa10.84□□□□□ -0.67
SYNE2-205ENST00000394768 TTBK1Q5TCY1 1321 aaPredicted RBP10.82□□□□□ -0.68
SYNE2-205ENST00000394768 RANGAP1P46060 587 aaPredicted RBP10.8□□□□□ -0.68
SYNE2-205ENST00000394768 ZNF316A6NFI3 1004 aaPredicted RBP10.71□□□□□ -0.7
SYNE2-205ENST00000394768 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.68□□□□□ -0.7
SYNE2-205ENST00000394768 HNRNPUL2Q1KMD3 747 aaKnown RBP10.68□□□□□ -0.7
SYNE2-205ENST00000394768 RTL5Q5HYW3 569 aaPredicted RBP10.63□□□□□ -0.71
SYNE2-205ENST00000394768 CLSPNQ9HAW4 1339 aa10.62□□□□□ -0.71
SYNE2-205ENST00000394768 ZBTB47Q9UFB7 747 aaPredicted RBP10.62□□□□□ -0.71
SYNE2-205ENST00000394768 SLC4A1APQ9BWU0 796 aaKnown RBP10.6□□□□□ -0.71
SYNE2-205ENST00000394768 POLR3GLQ9BT43 218 aa10.56□□□□□ -0.72
SYNE2-205ENST00000394768 NEFMP07197 916 aa10.56□□□□□ -0.72
SYNE2-205ENST00000394768 CHIC1Q5VXU3 224 aa10.47□□□□□ -0.73
SYNE2-205ENST00000394768 TRIM26Q12899 539 aaPredicted RBP10.43□□□□□ -0.74
SYNE2-205ENST00000394768 ITGAEP38570 1179 aa10.39□□□□□ -0.75
SYNE2-205ENST00000394768 ANP32BQ92688 251 aaKnown RBP10.34□□□□□ -0.75
SYNE2-205ENST00000394768 CANXP27824 592 aaKnown RBP10.33□□□□□ -0.76
SYNE2-205ENST00000394768 SLC24A1O60721 1099 aa10.32□□□□□ -0.76
SYNE2-205ENST00000394768 ESF1Q9H501 851 aaKnown RBP10.29□□□□□ -0.76
SYNE2-205ENST00000394768 BCANQ96GW7 911 aa10.28□□□□□ -0.76
SYNE2-205ENST00000394768 TRIM52Q96A61 297 aa10.26□□□□□ -0.77
SYNE2-205ENST00000394768 CDK11BP21127 795 aaKnown RBP10.25□□□□□ -0.77
SYNE2-205ENST00000394768 CDK11AQ9UQ88 783 aaPredicted RBP10.25□□□□□ -0.77
SYNE2-205ENST00000394768 CNGB1Q14028 1251 aaPredicted RBP10.23□□□□□ -0.77
SYNE2-205ENST00000394768 FAM50AQ14320 339 aaKnown RBP10.23□□□□□ -0.77
SYNE2-205ENST00000394768 ANP32CO43423 234 aa10.22□□□□□ -0.77
SYNE2-205ENST00000394768 UPF2Q9HAU5 1272 aaKnown RBP10.19□□□□□ -0.78
SYNE2-205ENST00000394768 HRCP23327 699 aa10.18□□□□□ -0.78
SYNE2-205ENST00000394768 HSP90AA1P07900 732 aaKnown RBP10.18□□□□□ -0.78
SYNE2-205ENST00000394768 ANP32AP39687 249 aaKnown RBP10.17□□□□□ -0.78
SYNE2-205ENST00000394768 GLIPR1L2Q4G1C9 344 aa10.14□□□□□ -0.79
SYNE2-205ENST00000394768 PPARGC1BQ86YN6 1023 aaKnown RBP10.13□□□□□ -0.79
SYNE2-205ENST00000394768 DIEXFQ68CQ4 756 aaKnown RBP10.12□□□□□ -0.79
SYNE2-205ENST00000394768 ZNF326Q5BKZ1 582 aaKnown RBP10.11□□□□□ -0.79
SYNE2-205ENST00000394768 STAG3Q9UJ98 1225 aa10.1□□□□□ -0.79
SYNE2-205ENST00000394768 NPM2Q86SE8 214 aaKnown RBP10.09□□□□□ -0.79
SYNE2-205ENST00000394768 FBLN2P98095 1184 aa10.08□□□□□ -0.8
SYNE2-205ENST00000394768 NPM1P06748 294 aaKnown RBP eCLIP10.06□□□□□ -0.8
SYNE2-205ENST00000394768 EIF5BO60841 1220 aaKnown RBP10.05□□□□□ -0.8
SYNE2-205ENST00000394768 NEUROD1Q13562 356 aa10.03□□□□□ -0.8
SYNE2-205ENST00000394768 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.02□□□□□ -0.81
SYNE2-205ENST00000394768 MYH16Q9H6N6 1097 aa10.02□□□□□ -0.81
SYNE2-205ENST00000394768 BCL11AQ9H165 835 aa10.01□□□□□ -0.81
SYNE2-205ENST00000394768 ACIN1Q9UKV3 1341 aaKnown RBP10□□□□□ -0.81
SYNE2-205ENST00000394768 ANP32EQ9BTT0 268 aa9.95□□□□□ -0.82
SYNE2-205ENST00000394768 ZRSR1Q15695 479 aaKnown RBP9.92□□□□□ -0.82
SYNE2-205ENST00000394768 TONSLQ96HA7 1378 aa9.91□□□□□ -0.82
SYNE2-205ENST00000394768 NCLP19338 710 aaKnown RBP9.91□□□□□ -0.82
SYNE2-205ENST00000394768 ZNF777Q9ULD5 760 aaPredicted RBP9.89□□□□□ -0.83
SYNE2-205ENST00000394768 WDR43Q15061 677 aaKnown RBP eCLIP9.88□□□□□ -0.83
SYNE2-205ENST00000394768 SCAF1Q9H7N4 1312 aaKnown RBP9.87□□□□□ -0.83
SYNE2-205ENST00000394768 GOLGA6L22H0YM25 854 aa9.87□□□□□ -0.83
SYNE2-205ENST00000394768 CASC1Q6TDU7 716 aa9.87□□□□□ -0.83
SYNE2-205ENST00000394768 CHGAP10645 457 aaKnown RBP9.86□□□□□ -0.83
SYNE2-205ENST00000394768 TNNT2P45379 298 aaPredicted RBP9.85□□□□□ -0.83
SYNE2-205ENST00000394768 ABCC9O60706 1549 aa9.85□□□□□ -0.83
SYNE2-205ENST00000394768 BECN1Q14457 450 aa9.84□□□□□ -0.83
SYNE2-205ENST00000394768 GOLGA6L6A8MZA4 724 aa9.83□□□□□ -0.84
SYNE2-205ENST00000394768 A0A0G2JS52 829 aa9.82□□□□□ -0.84
SYNE2-205ENST00000394768 HAP1P54257 671 aaPredicted RBP9.82□□□□□ -0.84
SYNE2-205ENST00000394768 CHMP4BQ9H444 224 aaKnown RBP9.81□□□□□ -0.84
SYNE2-205ENST00000394768 NRDCO43847 1150 aa9.81□□□□□ -0.84
SYNE2-205ENST00000394768 L1TD1Q5T7N2 865 aaKnown RBP9.8□□□□□ -0.84
SYNE2-205ENST00000394768 LOC105371045A0A1W2PR82 267 aa9.8□□□□□ -0.84
SYNE2-205ENST00000394768 C14orf37Q86TY3 774 aa9.8□□□□□ -0.84
SYNE2-205ENST00000394768 PPP1R15AO75807 674 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-205ENST00000394768 TMC1Q8TDI8 760 aa9.79□□□□□ -0.84
SYNE2-205ENST00000394768 TRIM44Q96DX7 344 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-205ENST00000394768 EIF4G2P78344 907 aaKnown RBP eCLIP9.79□□□□□ -0.84
SYNE2-205ENST00000394768 TSPY4P0CV99 314 aa9.79□□□□□ -0.84
SYNE2-205ENST00000394768 TSPY10P0CW01 314 aa9.79□□□□□ -0.84
SYNE2-205ENST00000394768 CDCA8Q53HL2 280 aa9.78□□□□□ -0.84
SYNE2-205ENST00000394768 DDRGK1Q96HY6 314 aa9.77□□□□□ -0.84
SYNE2-205ENST00000394768 NPHP1O15259 732 aa9.77□□□□□ -0.85
SYNE2-205ENST00000394768 PABPN1Q86U42 306 aaKnown RBP eCLIP9.76□□□□□ -0.85
SYNE2-205ENST00000394768 PLPPR3Q6T4P5 718 aa9.76□□□□□ -0.85
SYNE2-205ENST00000394768 CFAP53Q96M91 514 aa9.75□□□□□ -0.85
SYNE2-205ENST00000394768 CCDC136Q96JN2 1154 aa9.75□□□□□ -0.85
SYNE2-205ENST00000394768 GTF3C3Q9Y5Q9 886 aa9.75□□□□□ -0.85
SYNE2-205ENST00000394768 GOLGA2Q08379 1002 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms