RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 KDM4FA0A1W2PPD8 638 aa3.45□□□□□ -1.86
RNU6-540P-201ENST00000384622 PRR20EP86478 221 aa3.45□□□□□ -1.86
RNU6-540P-201ENST00000384622 PRR20CP86479 221 aa3.45□□□□□ -1.86
RNU6-540P-201ENST00000384622 PRR20DP86480 221 aa3.45□□□□□ -1.86
RNU6-540P-201ENST00000384622 PRR20BP86481 221 aa3.45□□□□□ -1.86
RNU6-540P-201ENST00000384622 PRR20AP86496 221 aa3.45□□□□□ -1.86
RNU6-540P-201ENST00000384622 ZBED2Q9BTP6 218 aa3.45□□□□□ -1.86
RNU6-540P-201ENST00000384622 ADAM23O75077 832 aa3.44□□□□□ -1.86
RNU6-540P-201ENST00000384622 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
RNU6-540P-201ENST00000384622 C2orf72A6NCS6 295 aa3.43□□□□□ -1.86
RNU6-540P-201ENST00000384622 CHRM1P11229 460 aaPredicted RBP3.43□□□□□ -1.86
RNU6-540P-201ENST00000384622 KIF3CO14782 793 aa3.42□□□□□ -1.86
RNU6-540P-201ENST00000384622 PTPREP23469 700 aa3.41□□□□□ -1.86
RNU6-540P-201ENST00000384622 GGCXP38435 758 aa3.41□□□□□ -1.86
RNU6-540P-201ENST00000384622 TJAP1Q5JTD0 557 aa3.41□□□□□ -1.86
RNU6-540P-201ENST00000384622 CRIPAKQ8N1N5 446 aa3.41□□□□□ -1.86
RNU6-540P-201ENST00000384622 SLC19A1P41440 591 aa3.4□□□□□ -1.87
RNU6-540P-201ENST00000384622 GSE1Q14687 1217 aa3.4□□□□□ -1.87
RNU6-540P-201ENST00000384622 IRF7Q92985 503 aa3.4□□□□□ -1.87
RNU6-540P-201ENST00000384622 KRTAP4-9Q9BYQ8 210 aa3.4□□□□□ -1.87
RNU6-540P-201ENST00000384622 BCL2L12Q9HB09 334 aa3.4□□□□□ -1.87
RNU6-540P-201ENST00000384622 TSR3Q9UJK0 312 aaKnown RBP3.4□□□□□ -1.87
RNU6-540P-201ENST00000384622 TNFRSF10AO00220 468 aa3.39□□□□□ -1.87
RNU6-540P-201ENST00000384622 AXIN1O15169 862 aa3.39□□□□□ -1.87
RNU6-540P-201ENST00000384622 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
RNU6-540P-201ENST00000384622 ZNF598Q86UK7 904 aaKnown RBP3.39□□□□□ -1.87
RNU6-540P-201ENST00000384622 RNF225M0QZC1 329 aaPredicted RBP3.38□□□□□ -1.87
RNU6-540P-201ENST00000384622 SNRPBP14678 240 aaKnown RBP3.38□□□□□ -1.87
RNU6-540P-201ENST00000384622 MS4A4AQ96JQ5 239 aa3.38□□□□□ -1.87
RNU6-540P-201ENST00000384622 ZFRQ96KR1 1074 aaKnown RBP3.38□□□□□ -1.87
RNU6-540P-201ENST00000384622 FOXK2Q01167 660 aa3.37□□□□□ -1.87
RNU6-540P-201ENST00000384622 SPRYD7Q5W111 196 aa3.37□□□□□ -1.87
RNU6-540P-201ENST00000384622 KRTAP19-1Q8IUB9 90 aa3.37□□□□□ -1.87
RNU6-540P-201ENST00000384622 IL21Q9HBE4 155 aa3.37□□□□□ -1.87
RNU6-540P-201ENST00000384622 RABGEF1Q9UJ41 708 aa3.37□□□□□ -1.87
RNU6-540P-201ENST00000384622 HPS5Q9UPZ3 1129 aa3.37□□□□□ -1.87
RNU6-540P-201ENST00000384622 SOX12O15370 315 aa3.36□□□□□ -1.87
RNU6-540P-201ENST00000384622 LAPTM4BQ86VI4 370 aa3.36□□□□□ -1.87
RNU6-540P-201ENST00000384622 ZNF454Q8N9F8 522 aa3.36□□□□□ -1.87
RNU6-540P-201ENST00000384622 PTCD2Q8WV60 388 aaKnown RBP3.36□□□□□ -1.87
RNU6-540P-201ENST00000384622 DNMT3AQ9Y6K1 912 aaPredicted RBP3.36□□□□□ -1.87
RNU6-540P-201ENST00000384622 GDF9O60383 454 aa3.35□□□□□ -1.87
RNU6-540P-201ENST00000384622 MTRQ99707 1265 aa3.35□□□□□ -1.87
RNU6-540P-201ENST00000384622 TMUB1Q9BVT8 246 aa3.35□□□□□ -1.87
RNU6-540P-201ENST00000384622 KRTAP9-8Q9BYQ0 159 aa3.35□□□□□ -1.87
RNU6-540P-201ENST00000384622 GOLGA2P5Q9HBQ8 144 aa3.35□□□□□ -1.87
RNU6-540P-201ENST00000384622 CTC1Q2NKJ3 1217 aa3.34□□□□□ -1.87
RNU6-540P-201ENST00000384622 ZNF697Q5TEC3 545 aa3.34□□□□□ -1.87
RNU6-540P-201ENST00000384622 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.34□□□□□ -1.87
RNU6-540P-201ENST00000384622 NXF1Q9UBU9 619 aaKnown RBP3.34□□□□□ -1.87
RNU6-540P-201ENST00000384622 TBC1D12O60347 775 aa3.33□□□□□ -1.88
RNU6-540P-201ENST00000384622 TMC2Q8TDI7 906 aa3.33□□□□□ -1.88
RNU6-540P-201ENST00000384622 ZNF516Q92618 1163 aa3.33□□□□□ -1.88
RNU6-540P-201ENST00000384622 SENP2Q9HC62 589 aa3.33□□□□□ -1.88
RNU6-540P-201ENST00000384622 COBLO75128 1261 aa3.32□□□□□ -1.88
RNU6-540P-201ENST00000384622 AVPP01185 164 aa3.32□□□□□ -1.88
RNU6-540P-201ENST00000384622 LRCH3Q96II8 777 aa3.32□□□□□ -1.88
RNU6-540P-201ENST00000384622 TRIM47Q96LD4 638 aa3.32□□□□□ -1.88
RNU6-540P-201ENST00000384622 PPP4CP60510 307 aa3.31□□□□□ -1.88
RNU6-540P-201ENST00000384622 NKX2-3Q8TAU0 364 aa3.31□□□□□ -1.88
RNU6-540P-201ENST00000384622 PHF8Q9UPP1 1060 aa3.31□□□□□ -1.88
RNU6-540P-201ENST00000384622 SMCPP49901 116 aaPredicted RBP3.3□□□□□ -1.88
RNU6-540P-201ENST00000384622 NPAS3Q8IXF0 933 aa3.3□□□□□ -1.88
RNU6-540P-201ENST00000384622 ATP13A2Q9NQ11 1180 aa3.3□□□□□ -1.88
RNU6-540P-201ENST00000384622 MSTNO14793 375 aa3.29□□□□□ -1.88
RNU6-540P-201ENST00000384622 VEGFBP49765 207 aa3.29□□□□□ -1.88
RNU6-540P-201ENST00000384622 PROX2Q3B8N5 592 aa3.29□□□□□ -1.88
RNU6-540P-201ENST00000384622 EMID1Q96A84 441 aaPredicted RBP3.29□□□□□ -1.88
RNU6-540P-201ENST00000384622 ERBB4Q15303 1308 aa3.28□□□□□ -1.88
RNU6-540P-201ENST00000384622 LAMC2Q13753 1193 aa3.28□□□□□ -1.88
RNU6-540P-201ENST00000384622 KIFC2Q96AC6 838 aa3.28□□□□□ -1.88
RNU6-540P-201ENST00000384622 K7ELQ4 463 aaPredicted RBP3.27□□□□□ -1.89
RNU6-540P-201ENST00000384622 IRS1P35568 1242 aa3.27□□□□□ -1.89
RNU6-540P-201ENST00000384622 KIAA1468Q9P260 1216 aa3.26□□□□□ -1.89
RNU6-540P-201ENST00000384622 SEPT9Q9UHD8 586 aaPredicted RBP3.26□□□□□ -1.89
RNU6-540P-201ENST00000384622 ADAMTS8Q9UP79 889 aa3.26□□□□□ -1.89
RNU6-540P-201ENST00000384622 RNF223E7ERA6 249 aa3.25□□□□□ -1.89
RNU6-540P-201ENST00000384622 H3BM21 787 aa3.25□□□□□ -1.89
RNU6-540P-201ENST00000384622 FOXC1Q12948 553 aa3.25□□□□□ -1.89
RNU6-540P-201ENST00000384622 FOSBP53539 338 aa3.24□□□□□ -1.89
RNU6-540P-201ENST00000384622 FAM98CQ17RN3 349 aaKnown RBP3.24□□□□□ -1.89
RNU6-540P-201ENST00000384622 LIAT1Q6ZQX7 453 aa3.24□□□□□ -1.89
RNU6-540P-201ENST00000384622 PPP1R3GB7ZBB8 358 aa3.23□□□□□ -1.89
RNU6-540P-201ENST00000384622 SPOCK3Q9BQ16 436 aa3.23□□□□□ -1.89
RNU6-540P-201ENST00000384622 KRTAP4-5Q9BYR2 181 aa3.23□□□□□ -1.89
RNU6-540P-201ENST00000384622 KANK3Q6NY19 840 aa3.22□□□□□ -1.89
RNU6-540P-201ENST00000384622 LMOD2Q6P5Q4 547 aa3.22□□□□□ -1.89
RNU6-540P-201ENST00000384622 GALNT6Q8NCL4 622 aa3.22□□□□□ -1.89
RNU6-540P-201ENST00000384622 ZDHHC16Q969W1 377 aa3.22□□□□□ -1.89
RNU6-540P-201ENST00000384622 ADAM33Q9BZ11 813 aa3.22□□□□□ -1.89
RNU6-540P-201ENST00000384622 NLRP6P59044 892 aa3.21□□□□□ -1.9
RNU6-540P-201ENST00000384622 CYP4X1Q8N118 509 aa3.21□□□□□ -1.9
RNU6-540P-201ENST00000384622 KRTAP4-11Q9BYQ6 195 aa3.21□□□□□ -1.9
RNU6-540P-201ENST00000384622 TOR4AQ9NXH8 423 aa3.21□□□□□ -1.9
RNU6-540P-201ENST00000384622 PKD2L1Q9P0L9 805 aa3.21□□□□□ -1.9
RNU6-540P-201ENST00000384622 ANKLE1Q8NAG6 615 aa3.2□□□□□ -1.9
RNU6-540P-201ENST00000384622 PLA2G4EQ3MJ16 856 aa3.19□□□□□ -1.9
RNU6-540P-201ENST00000384622 PPEF1O14829 653 aaPredicted RBP3.18□□□□□ -1.9
RNU6-540P-201ENST00000384622 ONECUT3O60422 494 aaPredicted RBP3.18□□□□□ -1.9
RNU6-540P-201ENST00000384622 COPS2P61201 443 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms