RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 RAPGEF2Q9Y4G8 1499 aa11.85□□□□□ -0.51
SNX1-202ENST00000380285 MROH2BQ7Z745 1585 aa11.85□□□□□ -0.51
SNX1-202ENST00000380285 ERCC6Q03468 1493 aa11.84□□□□□ -0.51
SNX1-202ENST00000380285 PRKCSHP14314 528 aaPredicted RBP11.83□□□□□ -0.52
SNX1-202ENST00000380285 DDX49Q9Y6V7 483 aaKnown RBP11.83□□□□□ -0.52
SNX1-202ENST00000380285 NPHP1O15259 732 aa11.83□□□□□ -0.52
SNX1-202ENST00000380285 TRIM6-TRIM34B2RNG4 842 aa11.82□□□□□ -0.52
SNX1-202ENST00000380285 L3MBTL2Q969R5 705 aa11.82□□□□□ -0.52
SNX1-202ENST00000380285 CCDC70Q6NSX1 233 aa11.82□□□□□ -0.52
SNX1-202ENST00000380285 GOLGA6L19H0YKK7 550 aa11.82□□□□□ -0.52
SNX1-202ENST00000380285 REC8O95072 547 aa11.81□□□□□ -0.52
SNX1-202ENST00000380285 AMER1Q5JTC6 1135 aaPredicted RBP11.81□□□□□ -0.52
SNX1-202ENST00000380285 ROCK1Q13464 1354 aa11.81□□□□□ -0.52
SNX1-202ENST00000380285 CHMP5Q9NZZ3 219 aa11.81□□□□□ -0.52
SNX1-202ENST00000380285 TEX35Q5T0J7 233 aa11.81□□□□□ -0.52
SNX1-202ENST00000380285 PRKRIP1Q9H875 184 aaPredicted RBP11.81□□□□□ -0.52
SNX1-202ENST00000380285 WIZO95785 1651 aa11.8□□□□□ -0.52
SNX1-202ENST00000380285 HSP90B1P14625 803 aaKnown RBP11.8□□□□□ -0.52
SNX1-202ENST00000380285 CUX1P39880 1505 aa11.8□□□□□ -0.52
SNX1-202ENST00000380285 TPM1P09493 284 aa11.8□□□□□ -0.52
SNX1-202ENST00000380285 PODXL2Q9NZ53 605 aa11.8□□□□□ -0.52
SNX1-202ENST00000380285 ZKSCAN2Q63HK3 967 aa11.79□□□□□ -0.52
SNX1-202ENST00000380285 TSR1Q2NL82 804 aaKnown RBP11.79□□□□□ -0.52
SNX1-202ENST00000380285 NUCB2P80303 420 aa11.78□□□□□ -0.52
SNX1-202ENST00000380285 LRRFIP1Q32MZ4 808 aaKnown RBP11.78□□□□□ -0.52
SNX1-202ENST00000380285 CCDC144AA2RUR9 1427 aa11.78□□□□□ -0.52
SNX1-202ENST00000380285 A0A0U1RQG5 324 aaPredicted RBP11.78□□□□□ -0.52
SNX1-202ENST00000380285 APBB1O00213 710 aa11.78□□□□□ -0.52
SNX1-202ENST00000380285 EFCAB2Q5VUJ9 269 aa11.78□□□□□ -0.52
SNX1-202ENST00000380285 TAOK2Q9UL54 1235 aa11.78□□□□□ -0.52
SNX1-202ENST00000380285 DDX19BQ9UMR2 479 aa11.78□□□□□ -0.52
SNX1-202ENST00000380285 PDS5BQ9NTI5 1447 aa11.78□□□□□ -0.52
SNX1-202ENST00000380285 SF3A1Q15459 793 aaKnown RBP11.77□□□□□ -0.53
SNX1-202ENST00000380285 LMOD2Q6P5Q4 547 aa11.76□□□□□ -0.53
SNX1-202ENST00000380285 BECN2A8MW95 431 aa11.76□□□□□ -0.53
SNX1-202ENST00000380285 RUFY2Q8WXA3 655 aa11.76□□□□□ -0.53
SNX1-202ENST00000380285 STAC3Q96MF2 364 aa11.76□□□□□ -0.53
SNX1-202ENST00000380285 FAM43AQ8N2R8 423 aa11.76□□□□□ -0.53
SNX1-202ENST00000380285 USP47Q96K76 1375 aa11.76□□□□□ -0.53
SNX1-202ENST00000380285 VSIG10Q8N0Z9 540 aa11.76□□□□□ -0.53
SNX1-202ENST00000380285 GORABQ5T7V8 394 aa11.75□□□□□ -0.53
SNX1-202ENST00000380285 H3BQV1 296 aa11.75□□□□□ -0.53
SNX1-202ENST00000380285 TPM2P07951 284 aa11.75□□□□□ -0.53
SNX1-202ENST00000380285 IFFO2Q5TF58 517 aa11.75□□□□□ -0.53
SNX1-202ENST00000380285 ISY1Q9ULR0 285 aaKnown RBP11.75□□□□□ -0.53
SNX1-202ENST00000380285 MRE11P49959 708 aa11.74□□□□□ -0.53
SNX1-202ENST00000380285 FOXD1Q16676 465 aa11.74□□□□□ -0.53
SNX1-202ENST00000380285 HOOK1Q9UJC3 728 aaKnown RBP11.74□□□□□ -0.53
SNX1-202ENST00000380285 NOM1Q5C9Z4 860 aaKnown RBP11.74□□□□□ -0.53
SNX1-202ENST00000380285 ZNF771Q7L3S4 317 aaPredicted RBP11.74□□□□□ -0.53
SNX1-202ENST00000380285 DIAPH3Q9NSV4 1193 aa11.74□□□□□ -0.53
SNX1-202ENST00000380285 ARID3AQ99856 593 aa11.73□□□□□ -0.53
SNX1-202ENST00000380285 SENP3Q9H4L4 574 aaPredicted RBP11.73□□□□□ -0.53
SNX1-202ENST00000380285 MIA2Q96PC5 1412 aa11.73□□□□□ -0.53
SNX1-202ENST00000380285 PLEKHG5O94827 1062 aa11.73□□□□□ -0.53
SNX1-202ENST00000380285 ARGLU1Q9NWB6 273 aaPredicted RBP11.73□□□□□ -0.53
SNX1-202ENST00000380285 ACBD3Q9H3P7 528 aa11.73□□□□□ -0.53
SNX1-202ENST00000380285 CEP89Q96ST8 783 aa11.73□□□□□ -0.53
SNX1-202ENST00000380285 FAM184AQ8NB25 1140 aa11.73□□□□□ -0.53
SNX1-202ENST00000380285 CRBNQ96SW2 442 aa11.72□□□□□ -0.53
SNX1-202ENST00000380285 CNTLNQ9NXG0 1405 aa11.72□□□□□ -0.53
SNX1-202ENST00000380285 CLSTN1O94985 981 aa11.72□□□□□ -0.53
SNX1-202ENST00000380285 NCBP3Q53F19 620 aaKnown RBP11.71□□□□□ -0.53
SNX1-202ENST00000380285 LETM1O95202 739 aaPredicted RBP11.71□□□□□ -0.53
SNX1-202ENST00000380285 CCDC39Q9UFE4 941 aa11.71□□□□□ -0.53
SNX1-202ENST00000380285 CPLX2Q6PUV4 134 aaKnown RBP11.71□□□□□ -0.53
SNX1-202ENST00000380285 ANKRD20A12PQ8NF67 263 aa11.71□□□□□ -0.53
SNX1-202ENST00000380285 ANKRD45Q5TZF3 282 aa11.71□□□□□ -0.53
SNX1-202ENST00000380285 EXOC6Q8TAG9 804 aa11.71□□□□□ -0.53
SNX1-202ENST00000380285 CLUAP1Q96AJ1 413 aa11.71□□□□□ -0.53
SNX1-202ENST00000380285 ZKSCAN1P17029 563 aaPredicted RBP11.71□□□□□ -0.54
SNX1-202ENST00000380285 DHX8Q14562 1220 aaKnown RBP11.71□□□□□ -0.54
SNX1-202ENST00000380285 TPD52L1Q16890 204 aaPredicted RBP11.71□□□□□ -0.54
SNX1-202ENST00000380285 RASSF8Q8NHQ8 419 aa11.71□□□□□ -0.54
SNX1-202ENST00000380285 IPO7O95373 1038 aaKnown RBP11.7□□□□□ -0.54
SNX1-202ENST00000380285 CCDC146Q8IYE0 955 aa11.7□□□□□ -0.54
SNX1-202ENST00000380285 BRD4O60885 1362 aaPredicted RBP11.7□□□□□ -0.54
SNX1-202ENST00000380285 API5Q9BZZ5 524 aaKnown RBP11.7□□□□□ -0.54
SNX1-202ENST00000380285 SMARCA4P51532 1647 aa11.69□□□□□ -0.54
SNX1-202ENST00000380285 TAF7LQ5H9L4 462 aa11.69□□□□□ -0.54
SNX1-202ENST00000380285 PANK3Q9H999 370 aa11.69□□□□□ -0.54
SNX1-202ENST00000380285 INTS3Q68E01 1043 aaKnown RBP11.69□□□□□ -0.54
SNX1-202ENST00000380285 RNF20Q5VTR2 975 aa11.69□□□□□ -0.54
SNX1-202ENST00000380285 ST20-MTHFSA0A0A6YYL1 179 aa11.69□□□□□ -0.54
SNX1-202ENST00000380285 FHOD3Q2V2M9 1422 aa11.69□□□□□ -0.54
SNX1-202ENST00000380285 NINLQ9Y2I6 1382 aa11.68□□□□□ -0.54
SNX1-202ENST00000380285 EVC2Q86UK5 1308 aa11.68□□□□□ -0.54
SNX1-202ENST00000380285 STK26Q9P289 416 aa11.68□□□□□ -0.54
SNX1-202ENST00000380285 HMGN5P82970 282 aaKnown RBP11.68□□□□□ -0.54
SNX1-202ENST00000380285 SLC4A10Q6U841 1118 aa11.68□□□□□ -0.54
SNX1-202ENST00000380285 SAFB2Q14151 953 aaKnown RBP eCLIP11.68□□□□□ -0.54
SNX1-202ENST00000380285 FOXD4L1Q9NU39 408 aa11.68□□□□□ -0.54
SNX1-202ENST00000380285 CDR1P51861 262 aa11.68□□□□□ -0.54
SNX1-202ENST00000380285 CWC15Q9P013 229 aaKnown RBP11.68□□□□□ -0.54
SNX1-202ENST00000380285 DZIP1LQ8IYY4 767 aaKnown RBP11.67□□□□□ -0.54
SNX1-202ENST00000380285 CCDC66A2RUB6 948 aa11.67□□□□□ -0.54
SNX1-202ENST00000380285 MBD3O95983 291 aa11.67□□□□□ -0.54
SNX1-202ENST00000380285 CCDC7Q96M83 1385 aa11.66□□□□□ -0.54
SNX1-202ENST00000380285 NFKBIBQ15653 356 aa11.66□□□□□ -0.54
SNX1-202ENST00000380285 NAT10Q9H0A0 1025 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 165.9 ms